RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 DEFB131AP59861 70 aa4.11□□□□□ -1.75
CCDC88A-203ENST00000412148 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.11□□□□□ -1.75
CCDC88A-203ENST00000412148 TPRP12270 2363 aaKnown RBP4.11□□□□□ -1.75
CCDC88A-203ENST00000412148 CR1P17927 2039 aa4.11□□□□□ -1.75
CCDC88A-203ENST00000412148 TLN1Q9Y490 2541 aaKnown RBP4.11□□□□□ -1.75
CCDC88A-203ENST00000412148 TRAV13-2A0A0B4J235 113 aa4.11□□□□□ -1.75
CCDC88A-203ENST00000412148 IGKV3-20P01619 116 aa4.11□□□□□ -1.75
CCDC88A-203ENST00000412148 GNLYP22749 145 aa4.11□□□□□ -1.75
CCDC88A-203ENST00000412148 CMC4P56277 68 aaPredicted RBP4.11□□□□□ -1.75
CCDC88A-203ENST00000412148 CEMP1Q6PRD7 247 aaPredicted RBP4.11□□□□□ -1.75
CCDC88A-203ENST00000412148 C5orf38Q86SI9 138 aa4.11□□□□□ -1.75
CCDC88A-203ENST00000412148 TMEM86BQ8N661 226 aa4.11□□□□□ -1.75
CCDC88A-203ENST00000412148 CLEC2BQ92478 149 aa4.11□□□□□ -1.75
CCDC88A-203ENST00000412148 OBSCN-AS1Q96MR7 158 aa4.11□□□□□ -1.75
CCDC88A-203ENST00000412148 MED13LQ71F56 2210 aa4.1□□□□□ -1.75
CCDC88A-203ENST00000412148 KNCNA6PVL3 124 aa4.1□□□□□ -1.75
CCDC88A-203ENST00000412148 ADARB2-AS1A8MUL3 147 aa4.1□□□□□ -1.75
CCDC88A-203ENST00000412148 DEFB114Q30KQ6 69 aa4.1□□□□□ -1.75
CCDC88A-203ENST00000412148 Q9H8V8 135 aa4.1□□□□□ -1.75
CCDC88A-203ENST00000412148 CDC42SE2Q9NRR3 84 aa4.1□□□□□ -1.75
CCDC88A-203ENST00000412148 HIVEP3Q5T1R4 2406 aa4.1□□□□□ -1.75
CCDC88A-203ENST00000412148 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.1□□□□□ -1.75
CCDC88A-203ENST00000412148 IGKV2-29A2NJV5 120 aaPredicted RBP4.1□□□□□ -1.75
CCDC88A-203ENST00000412148 K7EQD1 137 aa4.1□□□□□ -1.75
CCDC88A-203ENST00000412148 HIST1H4AP62805 103 aaKnown RBP4.1□□□□□ -1.75
CCDC88A-203ENST00000412148 RPL36AP83881 106 aaKnown RBP4.1□□□□□ -1.75
CCDC88A-203ENST00000412148 COX6A2Q02221 97 aa4.1□□□□□ -1.75
CCDC88A-203ENST00000412148 C10orf99Q6UWK7 81 aa4.1□□□□□ -1.75
CCDC88A-203ENST00000412148 RPL36ALQ969Q0 106 aaKnown RBP4.1□□□□□ -1.75
CCDC88A-203ENST00000412148 C22orf24Q9Y442 160 aa4.1□□□□□ -1.75
CCDC88A-203ENST00000412148 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.1□□□□□ -1.752e-10■■■■□ 23.2
CCDC88A-203ENST00000412148 B5MCH6 92 aa4.09□□□□□ -1.75
CCDC88A-203ENST00000412148 SOSTDC1Q6X4U4 206 aa4.09□□□□□ -1.75
CCDC88A-203ENST00000412148 LINC01561Q8N1V8 128 aa4.09□□□□□ -1.75
CCDC88A-203ENST00000412148 DEFB104AQ8WTQ1 72 aa4.09□□□□□ -1.75
CCDC88A-203ENST00000412148 MAP1BP46821 2468 aaKnown RBP4.09□□□□□ -1.75
CCDC88A-203ENST00000412148 PTPRZ1P23471 2315 aaPredicted RBP4.09□□□□□ -1.75
CCDC88A-203ENST00000412148 SPTBN1Q01082 2364 aaKnown RBP4.09□□□□□ -1.75
CCDC88A-203ENST00000412148 CCDC179H3BU77 68 aa4.09□□□□□ -1.75
CCDC88A-203ENST00000412148 LINC01587Q99440 93 aa4.09□□□□□ -1.75
CCDC88A-203ENST00000412148 H0YGX0 51 aa4.08□□□□□ -1.76
CCDC88A-203ENST00000412148 LCE2BO14633 110 aa4.08□□□□□ -1.76
CCDC88A-203ENST00000412148 Q9UF83 564 aa4.08□□□□□ -1.76
CCDC88A-203ENST00000412148 GVINP1Q7Z2Y8 2422 aa4.08□□□□□ -1.76
CCDC88A-203ENST00000412148 TRBV6-4A0A1B0GX49 114 aa4.08□□□□□ -1.76
CCDC88A-203ENST00000412148 LINC00694P0DN24 101 aa4.08□□□□□ -1.76
CCDC88A-203ENST00000412148 MEIG1Q5JSS6 88 aa4.08□□□□□ -1.76
CCDC88A-203ENST00000412148 NTM-AS1Q6ZSK4 140 aa4.08□□□□□ -1.76
CCDC88A-203ENST00000412148 LRRC75A-AS1Q8N1F1 130 aa4.08□□□□□ -1.76
CCDC88A-203ENST00000412148 IGHV3-73A0A0B4J1V6 119 aa4.08□□□□□ -1.76
CCDC88A-203ENST00000412148 A0A1B0GX51 115 aa4.08□□□□□ -1.76
CCDC88A-203ENST00000412148 UQCRQO14949 82 aa4.08□□□□□ -1.76
CCDC88A-203ENST00000412148 SLURP1P55000 103 aa4.08□□□□□ -1.76
CCDC88A-203ENST00000412148 Q6ZSV7 163 aa4.08□□□□□ -1.76
CCDC88A-203ENST00000412148 PRIMA1Q86XR5 153 aa4.08□□□□□ -1.76
CCDC88A-203ENST00000412148 C1orf158Q8N1D5 194 aa4.08□□□□□ -1.76
CCDC88A-203ENST00000412148 SS18L2Q9UHA2 77 aa4.08□□□□□ -1.76
CCDC88A-203ENST00000412148 IBA57-AS1B1ANH7 110 aa4.07□□□□□ -1.76
CCDC88A-203ENST00000412148 LY6G6DO95868 133 aa4.07□□□□□ -1.76
CCDC88A-203ENST00000412148 RNASE13Q5GAN3 156 aaKnown RBP4.07□□□□□ -1.76
CCDC88A-203ENST00000412148 F8WDY8 70 aa4.07□□□□□ -1.76
CCDC88A-203ENST00000412148 BAALC-AS2P0C853 105 aa4.07□□□□□ -1.76
CCDC88A-203ENST00000412148 ODF3L2Q3SX64 289 aa4.07□□□□□ -1.76
CCDC88A-203ENST00000412148 LINC00526Q96FQ7 95 aa4.07□□□□□ -1.76
CCDC88A-203ENST00000412148 TMEM243Q9BU79 118 aa4.07□□□□□ -1.76
CCDC88A-203ENST00000412148 IGHV4-31P0DP07 118 aa4.06□□□□□ -1.76
CCDC88A-203ENST00000412148 SMCR5Q8TEV8 140 aa4.06□□□□□ -1.76
CCDC88A-203ENST00000412148 DYNLRB2Q8TF09 96 aa4.06□□□□□ -1.76
CCDC88A-203ENST00000412148 C16orf74Q96GX8 76 aa4.06□□□□□ -1.76
CCDC88A-203ENST00000412148 LINC00167Q96N53 147 aa4.06□□□□□ -1.76
CCDC88A-203ENST00000412148 CSMD1Q96PZ7 3565 aa4.06□□□□□ -1.76
CCDC88A-203ENST00000412148 COL6A6A6NMZ7 2263 aa4.06□□□□□ -1.76
CCDC88A-203ENST00000412148 A0A0U1RRA0 63 aa4.06□□□□□ -1.76
CCDC88A-203ENST00000412148 Q6JHZ5 121 aa4.06□□□□□ -1.76
CCDC88A-203ENST00000412148 C3orf22Q8N5N4 141 aa4.06□□□□□ -1.76
CCDC88A-203ENST00000412148 IGHV3OR16-9A0A0B4J2B5 98 aa4.05□□□□□ -1.76
CCDC88A-203ENST00000412148 CRPP02741 224 aa4.05□□□□□ -1.76
CCDC88A-203ENST00000412148 COX7B2Q8TF08 81 aa4.05□□□□□ -1.76
CCDC88A-203ENST00000412148 IGKV2-28A0A075B6P5 120 aa4.05□□□□□ -1.76
CCDC88A-203ENST00000412148 A0A087WZ39 114 aa4.05□□□□□ -1.76
CCDC88A-203ENST00000412148 IGHV3-38A0A0C4DH36 116 aa4.05□□□□□ -1.76
CCDC88A-203ENST00000412148 PLAC8L1A1L4L8 177 aa4.05□□□□□ -1.76
CCDC88A-203ENST00000412148 IGKV2D-28P01615 120 aa4.05□□□□□ -1.76
CCDC88A-203ENST00000412148 CRYGAP11844 174 aa4.05□□□□□ -1.76
CCDC88A-203ENST00000412148 STHQ8IWL8 128 aa4.05□□□□□ -1.76
CCDC88A-203ENST00000412148 Q96MF0 132 aa4.05□□□□□ -1.76
CCDC88A-203ENST00000412148 FAM218AQ96MZ4 157 aa4.05□□□□□ -1.76
CCDC88A-203ENST00000412148 TTC28Q96AY4 2481 aa4.05□□□□□ -1.76
CCDC88A-203ENST00000412148 LAMA5O15230 3695 aa4.04□□□□□ -1.76
CCDC88A-203ENST00000412148 ATOX1O00244 68 aa4.04□□□□□ -1.76
CCDC88A-203ENST00000412148 NPC2P61916 151 aa4.04□□□□□ -1.76
CCDC88A-203ENST00000412148 RPS28P62857 69 aaKnown RBP4.04□□□□□ -1.76
CCDC88A-203ENST00000412148 MUC7Q8TAX7 377 aa4.04□□□□□ -1.76
CCDC88A-203ENST00000412148 KLK5Q9Y337 293 aaPredicted RBP4.04□□□□□ -1.76
CCDC88A-203ENST00000412148 FAM236AA0A1B0GUQ0 79 aa4.04□□□□□ -1.76
CCDC88A-203ENST00000412148 FAM236BA0A1B0GV22 79 aa4.04□□□□□ -1.76
CCDC88A-203ENST00000412148 COX7CP15954 63 aa4.04□□□□□ -1.76
CCDC88A-203ENST00000412148 LINC00337Q8N6G1 96 aa4.04□□□□□ -1.76
CCDC88A-203ENST00000412148 LINC00612Q8N6U2 182 aa4.04□□□□□ -1.76
CCDC88A-203ENST00000412148 A0A0A0MQY5 61 aa4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 106.2 ms