RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 HIST3H2BBQ8N257 126 aa12.3□□□□□ -0.44
SDC1-203ENST00000403076 TMEM141Q96I45 108 aa12.3□□□□□ -0.44
SDC1-203ENST00000403076 OPRPNQ99935 248 aaPredicted RBP12.3□□□□□ -0.44
SDC1-203ENST00000403076 IGIPA6NJ69 53 aa12.29□□□□□ -0.44
SDC1-203ENST00000403076 PACRGQ96M98 296 aaPredicted RBP12.29□□□□□ -0.44
SDC1-203ENST00000403076 TIMM17AQ99595 171 aa12.29□□□□□ -0.44
SDC1-203ENST00000403076 CSDC2Q9Y534 153 aaKnown RBP12.29□□□□□ -0.44
SDC1-203ENST00000403076 Q6ZN92 141 aa12.28□□□□□ -0.44
SDC1-203ENST00000403076 Q6ZUT4 128 aa12.28□□□□□ -0.44
SDC1-203ENST00000403076 ZNF664Q8N3J9 261 aa12.28□□□□□ -0.44
SDC1-203ENST00000403076 HSPB8Q9UJY1 196 aa12.28□□□□□ -0.44
SDC1-203ENST00000403076 KLK12Q9UKR0 248 aa12.28□□□□□ -0.44
SDC1-203ENST00000403076 TRAV9-2A0A087WT02 112 aa12.27□□□□□ -0.44
SDC1-203ENST00000403076 RNASE13Q5GAN3 156 aaKnown RBP12.27□□□□□ -0.44
SDC1-203ENST00000403076 PAPPA-AS1Q5QFB9 102 aa12.27□□□□□ -0.44
SDC1-203ENST00000403076 CDC42SE2Q9NRR3 84 aa12.27□□□□□ -0.44
SDC1-203ENST00000403076 IGLV4-3A0A075B6K6 122 aa12.27□□□□□ -0.45
SDC1-203ENST00000403076 MRPS36P82909 103 aaKnown RBP12.27□□□□□ -0.45
SDC1-203ENST00000403076 LINC00173Q6ZV60 143 aa12.27□□□□□ -0.45
SDC1-203ENST00000403076 LINC00476Q8WZB0 136 aa12.27□□□□□ -0.45
SDC1-203ENST00000403076 IFI27L1Q96BM0 104 aa12.27□□□□□ -0.45
SDC1-203ENST00000403076 VCX2Q9H322 139 aa12.27□□□□□ -0.45
SDC1-203ENST00000403076 IGKV3OR2-268A0A0C4DH90 116 aa12.26□□□□□ -0.45
SDC1-203ENST00000403076 NPSP0C0P6 89 aa12.26□□□□□ -0.45
SDC1-203ENST00000403076 LINC00269Q8N2A0 174 aa12.26□□□□□ -0.45
SDC1-203ENST00000403076 PRSS1P07477 247 aa12.25□□□□□ -0.45
SDC1-203ENST00000403076 CLPSL2Q6UWE3 100 aa12.25□□□□□ -0.45
SDC1-203ENST00000403076 C10orf126Q8N4M7 172 aa12.25□□□□□ -0.45
SDC1-203ENST00000403076 PLECQ15149 4684 aaKnown RBP12.25□□□□□ -0.45
SDC1-203ENST00000403076 CRPP02741 224 aa12.24□□□□□ -0.45
SDC1-203ENST00000403076 TEX43Q6ZNM6 134 aa12.24□□□□□ -0.45
SDC1-203ENST00000403076 UBE2WQ96B02 151 aa12.24□□□□□ -0.45
SDC1-203ENST00000403076 REG3AQ06141 175 aa12.23□□□□□ -0.45
SDC1-203ENST00000403076 ZC2HC1BQ5TFG8 222 aa12.23□□□□□ -0.45
SDC1-203ENST00000403076 BAALCQ8WXS3 180 aa12.23□□□□□ -0.45
SDC1-203ENST00000403076 FAM104AQ969W3 186 aa12.23□□□□□ -0.45
SDC1-203ENST00000403076 HIST1H2BLQ99880 126 aa12.23□□□□□ -0.45
SDC1-203ENST00000403076 H0Y8G0 127 aa12.22□□□□□ -0.45
SDC1-203ENST00000403076 K7EP13 123 aa12.22□□□□□ -0.45
SDC1-203ENST00000403076 C2orf88Q9BSF0 95 aa12.22□□□□□ -0.45
SDC1-203ENST00000403076 MAP1LC3CQ9BXW4 147 aa12.22□□□□□ -0.45
SDC1-203ENST00000403076 IFITM10A6NMD0 228 aa12.21□□□□□ -0.45
SDC1-203ENST00000403076 PMVKQ15126 192 aa12.21□□□□□ -0.45
SDC1-203ENST00000403076 TTC32Q5I0X7 151 aa12.21□□□□□ -0.45
SDC1-203ENST00000403076 TRAV13-1A0A0B4J241 112 aa12.21□□□□□ -0.46
SDC1-203ENST00000403076 NBDYA0A0U1RRE5 68 aa12.21□□□□□ -0.46
SDC1-203ENST00000403076 AMELXQ99217 191 aa12.21□□□□□ -0.46
SDC1-203ENST00000403076 IBA57-AS1B1ANH7 110 aa12.2□□□□□ -0.46
SDC1-203ENST00000403076 M0R2N4 97 aa12.2□□□□□ -0.46
SDC1-203ENST00000403076 KRTDAPP60985 99 aa12.2□□□□□ -0.46
SDC1-203ENST00000403076 CST9LQ9H4G1 147 aa12.2□□□□□ -0.46
SDC1-203ENST00000403076 LOC105371267A0A1B0GV96 52 aa12.19□□□□□ -0.46
SDC1-203ENST00000403076 ENHOQ6UWT2 76 aa12.19□□□□□ -0.46
SDC1-203ENST00000403076 Q9HAA7 133 aa12.19□□□□□ -0.46
SDC1-203ENST00000403076 PRR34Q9NV39 138 aa12.19□□□□□ -0.46
SDC1-203ENST00000403076 PRSS29PA6NIE9 313 aa12.18□□□□□ -0.46
SDC1-203ENST00000403076 SS18Q15532 418 aa12.18□□□□□ -0.46
SDC1-203ENST00000403076 TRAV8-3A0A0A6YYJ7 113 aa12.17□□□□□ -0.46
SDC1-203ENST00000403076 LINC00959A0A1B0GUT2 108 aa12.17□□□□□ -0.46
SDC1-203ENST00000403076 C3orf79P0CE67 100 aa12.17□□□□□ -0.46
SDC1-203ENST00000403076 MIAQ16674 131 aa12.17□□□□□ -0.46
SDC1-203ENST00000403076 KRTAP1-5Q9BYS1 174 aa12.17□□□□□ -0.46
SDC1-203ENST00000403076 IGLV10-54A0A075B6I4 117 aa12.16□□□□□ -0.46
SDC1-203ENST00000403076 SYS1-DBNDD2H3BUS1 97 aa12.16□□□□□ -0.46
SDC1-203ENST00000403076 TRAV12-1A0A0B4J245 112 aa12.16□□□□□ -0.46
SDC1-203ENST00000403076 OR10D4PQ8NGN7 298 aa12.16□□□□□ -0.46
SDC1-203ENST00000403076 CHTOPQ9Y3Y2 248 aaKnown RBP12.16□□□□□ -0.46
SDC1-203ENST00000403076 TRAV8-4A0A0B4J246 113 aa12.15□□□□□ -0.46
SDC1-203ENST00000403076 UBE2D1P51668 147 aa12.15□□□□□ -0.46
SDC1-203ENST00000403076 C1orf43Q9BWL3 253 aa12.15□□□□□ -0.46
SDC1-203ENST00000403076 IGKV2D-24A0A075B6R9 120 aa12.14□□□□□ -0.47
SDC1-203ENST00000403076 A0A0J9YXV3 536 aa12.14□□□□□ -0.47
SDC1-203ENST00000403076 LCE6AA0A183 80 aa12.14□□□□□ -0.47
SDC1-203ENST00000403076 CCL25O15444 150 aa12.14□□□□□ -0.47
SDC1-203ENST00000403076 PET117Q6UWS5 81 aa12.14□□□□□ -0.47
SDC1-203ENST00000403076 SPATA12Q7Z6I5 190 aa12.14□□□□□ -0.47
SDC1-203ENST00000403076 CHCHD10Q8WYQ3 142 aaPredicted RBP12.14□□□□□ -0.47
SDC1-203ENST00000403076 RMI2Q96E14 147 aa12.14□□□□□ -0.47
SDC1-203ENST00000403076 XCL1P47992 114 aa12.13□□□□□ -0.47
SDC1-203ENST00000403076 SEC11AP67812 179 aa12.12□□□□□ -0.47
SDC1-203ENST00000403076 ODF1Q14990 250 aa12.12□□□□□ -0.47
SDC1-203ENST00000403076 GEMIN7Q9H840 131 aaKnown RBP12.12□□□□□ -0.47
SDC1-203ENST00000403076 LINC00242Q5T6M2 205 aa12.11□□□□□ -0.47
SDC1-203ENST00000403076 PMCHL2Q9BQD1 86 aa12.11□□□□□ -0.47
SDC1-203ENST00000403076 MRPL35Q9NZE8 188 aaKnown RBP12.11□□□□□ -0.47
SDC1-203ENST00000403076 C20orf202A1L168 122 aa12.11□□□□□ -0.47
SDC1-203ENST00000403076 F8VRH5 84 aa12.11□□□□□ -0.47
SDC1-203ENST00000403076 Q6ZR54 194 aa12.11□□□□□ -0.47
SDC1-203ENST00000403076 GAGE12HA6NDE8 117 aa12.1□□□□□ -0.47
SDC1-203ENST00000403076 NFE4Q86UQ8 179 aa12.1□□□□□ -0.47
SDC1-203ENST00000403076 TM2D2Q9BX73 214 aa12.1□□□□□ -0.47
SDC1-203ENST00000403076 LYSTQ99698 3801 aa12.1□□□□□ -0.47
SDC1-203ENST00000403076 TINCRA0A1B0GVN0 87 aa12.09□□□□□ -0.47
SDC1-203ENST00000403076 HERVK_113P63121 156 aa12.09□□□□□ -0.47
SDC1-203ENST00000403076 CHAC1Q9BUX1 264 aa12.09□□□□□ -0.47
SDC1-203ENST00000403076 COX11Q9Y6N1 276 aa12.09□□□□□ -0.47
SDC1-203ENST00000403076 IGLV4-69A0A075B6H9 119 aa12.08□□□□□ -0.48
SDC1-203ENST00000403076 IGLC3P0DOY3 106 aa12.08□□□□□ -0.48
SDC1-203ENST00000403076 AKR1D1P51857 326 aa12.08□□□□□ -0.48
SDC1-203ENST00000403076 COX6A2Q02221 97 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 85.4 ms