RNA–Protein interactions for RNA: ENST00000394633.7

PCDHA1-202, Transcript of protocadherin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene PCDHA1, Length 2,204 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-202ENST00000394633 LINC01620Q4KN68 170 aa13.32□□□□□ -0.28
PCDHA1-202ENST00000394633 VSIG2Q96IQ7 327 aa13.32□□□□□ -0.28
PCDHA1-202ENST00000394633 SPANXDQ9BXN6 97 aa13.32□□□□□ -0.28
PCDHA1-202ENST00000394633 YAE1D1Q9NRH1 226 aa13.32□□□□□ -0.28
PCDHA1-202ENST00000394633 SPANXCQ9NY87 97 aa13.32□□□□□ -0.28
PCDHA1-202ENST00000394633 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.31□□□□□ -0.28
PCDHA1-202ENST00000394633 TRBV30A0A0K0K1B3 111 aa13.31□□□□□ -0.28
PCDHA1-202ENST00000394633 IGKV2-29A2NJV5 120 aaPredicted RBP13.31□□□□□ -0.28
PCDHA1-202ENST00000394633 ZNF415Q09FC8 603 aa13.31□□□□□ -0.28
PCDHA1-202ENST00000394633 PRSS2P07478 247 aa13.31□□□□□ -0.28
PCDHA1-202ENST00000394633 SPANXA1Q9NS26 97 aa13.31□□□□□ -0.28
PCDHA1-202ENST00000394633 GEMIN7Q9H840 131 aaKnown RBP13.3□□□□□ -0.28
PCDHA1-202ENST00000394633 PIK3CD-AS1Q5SR53 167 aa13.29□□□□□ -0.28
PCDHA1-202ENST00000394633 LINC00467Q9BRT7 94 aa13.29□□□□□ -0.28
PCDHA1-202ENST00000394633 TMEM262E9PQX1 116 aa13.29□□□□□ -0.28
PCDHA1-202ENST00000394633 NTN5Q8WTR8 489 aaPredicted RBP13.29□□□□□ -0.28
PCDHA1-202ENST00000394633 IGHV3-38A0A0C4DH36 116 aa13.28□□□□□ -0.28
PCDHA1-202ENST00000394633 MIAQ16674 131 aa13.28□□□□□ -0.28
PCDHA1-202ENST00000394633 TMEM61Q8N0U2 210 aa13.28□□□□□ -0.28
PCDHA1-202ENST00000394633 C11orf72Q8NBR9 251 aa13.28□□□□□ -0.28
PCDHA1-202ENST00000394633 LINC01600Q96MT4 127 aa13.28□□□□□ -0.28
PCDHA1-202ENST00000394633 NPC2P61916 151 aa13.27□□□□□ -0.28
PCDHA1-202ENST00000394633 Q6ZSV7 163 aa13.27□□□□□ -0.29
PCDHA1-202ENST00000394633 ICOSQ9Y6W8 199 aa13.27□□□□□ -0.29
PCDHA1-202ENST00000394633 TRBV10-2A0A0K0K1G8 114 aa13.26□□□□□ -0.29
PCDHA1-202ENST00000394633 IGHV3-53P01767 116 aa13.26□□□□□ -0.29
PCDHA1-202ENST00000394633 ZFAND6Q6FIF0 208 aa13.26□□□□□ -0.29
PCDHA1-202ENST00000394633 MAP6D1Q9H9H5 199 aa13.26□□□□□ -0.29
PCDHA1-202ENST00000394633 LINC01587Q99440 93 aa13.25□□□□□ -0.29
PCDHA1-202ENST00000394633 DNAJC30Q96LL9 226 aa13.25□□□□□ -0.29
PCDHA1-202ENST00000394633 ESM1Q9NQ30 184 aa13.25□□□□□ -0.29
PCDHA1-202ENST00000394633 BEAN1Q3B7T3 259 aa13.24□□□□□ -0.29
PCDHA1-202ENST00000394633 CDKN2A-AS1Q9UH64 79 aa13.24□□□□□ -0.29
PCDHA1-202ENST00000394633 TRAV26-1A0A087WT03 109 aa13.23□□□□□ -0.29
PCDHA1-202ENST00000394633 LY6G6DO95868 133 aa13.23□□□□□ -0.29
PCDHA1-202ENST00000394633 RPL13AP40429 203 aaKnown RBP13.23□□□□□ -0.29
PCDHA1-202ENST00000394633 FN1P02751 2386 aaKnown RBP13.23□□□□□ -0.29
PCDHA1-202ENST00000394633 TEX49A0A1B0GTD5 131 aa13.23□□□□□ -0.29
PCDHA1-202ENST00000394633 DNAJC9-AS1A6NH13 148 aa13.23□□□□□ -0.29
PCDHA1-202ENST00000394633 RS1O15537 224 aa13.23□□□□□ -0.29
PCDHA1-202ENST00000394633 CITED1Q99966 193 aa13.23□□□□□ -0.29
PCDHA1-202ENST00000394633 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.22□□□□□ -0.29
PCDHA1-202ENST00000394633 PEMTQ9UBM1 199 aa13.22□□□□□ -0.29
PCDHA1-202ENST00000394633 TIMM17BO60830 172 aa13.21□□□□□ -0.29
PCDHA1-202ENST00000394633 F8P00451 2351 aa13.21□□□□□ -0.29
PCDHA1-202ENST00000394633 IGLV5-45A0A087WSX0 123 aa13.21□□□□□ -0.29
PCDHA1-202ENST00000394633 H7C423 109 aa13.21□□□□□ -0.29
PCDHA1-202ENST00000394633 TEX29Q8N6K0 151 aa13.21□□□□□ -0.29
PCDHA1-202ENST00000394633 RNF183Q96D59 192 aa13.21□□□□□ -0.29
PCDHA1-202ENST00000394633 TMEM101Q96IK0 257 aa13.21□□□□□ -0.29
PCDHA1-202ENST00000394633 TIRAPP58753 221 aa13.2□□□□□ -0.3
PCDHA1-202ENST00000394633 DAND5Q8N907 189 aa13.2□□□□□ -0.3
PCDHA1-202ENST00000394633 NIPBLQ6KC79 2804 aaeCLIP13.2□□□□□ -0.3
PCDHA1-202ENST00000394633 NDUFA1O15239 70 aa13.2□□□□□ -0.3
PCDHA1-202ENST00000394633 INSP01308 110 aa13.2□□□□□ -0.3
PCDHA1-202ENST00000394633 COX6A2Q02221 97 aa13.2□□□□□ -0.3
PCDHA1-202ENST00000394633 HIST2H2BDQ6DRA6 164 aa13.2□□□□□ -0.3
PCDHA1-202ENST00000394633 DYNLRB2Q8TF09 96 aa13.2□□□□□ -0.3
PCDHA1-202ENST00000394633 CLEC2BQ92478 149 aa13.2□□□□□ -0.3
PCDHA1-202ENST00000394633 C2orf82Q6UX34 121 aa13.19□□□□□ -0.3
PCDHA1-202ENST00000394633 Q8N2B8 174 aa13.19□□□□□ -0.3
PCDHA1-202ENST00000394633 UBE2WQ96B02 151 aa13.19□□□□□ -0.3
PCDHA1-202ENST00000394633 COX6CP09669 75 aa13.19□□□□□ -0.3
PCDHA1-202ENST00000394633 IFITM1P13164 125 aa13.19□□□□□ -0.3
PCDHA1-202ENST00000394633 DEFB114Q30KQ6 69 aa13.19□□□□□ -0.3
PCDHA1-202ENST00000394633 C4orf3Q8WVX3 66 aa13.19□□□□□ -0.3
PCDHA1-202ENST00000394633 IGHV3OR16-12A0A075B7B8 117 aa13.17□□□□□ -0.3
PCDHA1-202ENST00000394633 KHDC1LQ5JSQ8 128 aa13.17□□□□□ -0.3
PCDHA1-202ENST00000394633 TRAV8-4A0A0B4J246 113 aa13.17□□□□□ -0.3
PCDHA1-202ENST00000394633 DGAT2L7PQ6IED9 249 aa13.17□□□□□ -0.3
PCDHA1-202ENST00000394633 TMEM86BQ8N661 226 aa13.17□□□□□ -0.3
PCDHA1-202ENST00000394633 H3BT86 120 aa13.16□□□□□ -0.3
PCDHA1-202ENST00000394633 LST1O00453 97 aa13.16□□□□□ -0.3
PCDHA1-202ENST00000394633 CRLF1O75462 422 aa13.16□□□□□ -0.3
PCDHA1-202ENST00000394633 XCL2Q9UBD3 114 aa13.16□□□□□ -0.3
PCDHA1-202ENST00000394633 CLUHP3Q96NS8 147 aa13.16□□□□□ -0.3
PCDHA1-202ENST00000394633 TRAV4A0A0B4J268 109 aa13.15□□□□□ -0.3
PCDHA1-202ENST00000394633 LINC00242Q5T6M2 205 aa13.15□□□□□ -0.3
PCDHA1-202ENST00000394633 IGLV5-39A0A0G2JS06 123 aa13.15□□□□□ -0.31
PCDHA1-202ENST00000394633 SNCGO76070 127 aa13.15□□□□□ -0.31
PCDHA1-202ENST00000394633 LINC00694P0DN24 101 aa13.15□□□□□ -0.31
PCDHA1-202ENST00000394633 CITED2Q99967 270 aaPredicted RBP13.15□□□□□ -0.31
PCDHA1-202ENST00000394633 ANAPC13Q9BS18 74 aa13.15□□□□□ -0.31
PCDHA1-202ENST00000394633 INAFM1C9JVW0 142 aa13.14□□□□□ -0.31
PCDHA1-202ENST00000394633 TEP1Q99973 2627 aaKnown RBP13.14□□□□□ -0.31
PCDHA1-202ENST00000394633 Q9H8V8 135 aa13.13□□□□□ -0.31
PCDHA1-202ENST00000394633 NDUFA7O95182 113 aa13.13□□□□□ -0.31
PCDHA1-202ENST00000394633 HERVK_113P63121 156 aa13.13□□□□□ -0.31
PCDHA1-202ENST00000394633 ODF3L2Q3SX64 289 aa13.13□□□□□ -0.31
PCDHA1-202ENST00000394633 C1orf158Q8N1D5 194 aa13.13□□□□□ -0.31
PCDHA1-202ENST00000394633 LINC00308Q8TCZ7 52 aa13.13□□□□□ -0.31
PCDHA1-202ENST00000394633 C2CD3Q4AC94 2353 aa13.12□□□□□ -0.31
PCDHA1-202ENST00000394633 CIRBPQ14011 172 aaKnown RBP13.12□□□□□ -0.31
PCDHA1-202ENST00000394633 IL17DQ8TAD2 202 aa13.12□□□□□ -0.31
PCDHA1-202ENST00000394633 GAGE2BQ13066 116 aa13.12□□□□□ -0.31
PCDHA1-202ENST00000394633 GAGE2EQ4V326 116 aa13.12□□□□□ -0.31
PCDHA1-202ENST00000394633 ZNF625Q96I27 306 aaPredicted RBP13.12□□□□□ -0.31
PCDHA1-202ENST00000394633 GAGE2DQ9UEU5 116 aa13.12□□□□□ -0.31
PCDHA1-202ENST00000394633 JMJD1CQ15652 2540 aa13.11□□□□□ -0.31
PCDHA1-202ENST00000394633 TRGV1A0A0A0MS02 117 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms