RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 EDA2RQ9HAV5 297 aa8.23□□□□□ -1.09
CUX1-204ENST00000393824 TRAV41A0A0B4J266 112 aa8.21□□□□□ -1.09
CUX1-204ENST00000393824 A0A0J9YXY3 114 aa8.21□□□□□ -1.09
CUX1-204ENST00000393824 TRBV6-5A0A0K0K1A5 114 aa8.21□□□□□ -1.09
CUX1-204ENST00000393824 UQCRQO14949 82 aa8.21□□□□□ -1.09
CUX1-204ENST00000393824 COX6CP09669 75 aa8.21□□□□□ -1.09
CUX1-204ENST00000393824 MRAPQ8TCY5 172 aa8.21□□□□□ -1.09
CUX1-204ENST00000393824 C20orf173Q96LM9 149 aa8.21□□□□□ -1.09
CUX1-204ENST00000393824 ICOSQ9Y6W8 199 aa8.21□□□□□ -1.09
CUX1-204ENST00000393824 TRRAPQ9Y4A5 3859 aa8.21□□□□□ -1.09
CUX1-204ENST00000393824 VWFP04275 2813 aa8.21□□□□□ -1.1
CUX1-204ENST00000393824 GNRH2O43555 120 aa8.21□□□□□ -1.1
CUX1-204ENST00000393824 ZNF22P17026 224 aaPredicted RBP8.21□□□□□ -1.1
CUX1-204ENST00000393824 LINC00526Q96FQ7 95 aa8.21□□□□□ -1.1
CUX1-204ENST00000393824 DUX3Q96PT4 197 aa8.21□□□□□ -1.1
CUX1-204ENST00000393824 LITAFQ99732 161 aa8.21□□□□□ -1.1
CUX1-204ENST00000393824 IGHV3-49A0A0A0MS15 119 aa8.2□□□□□ -1.1
CUX1-204ENST00000393824 SOCS3O14543 225 aa8.2□□□□□ -1.1
CUX1-204ENST00000393824 ACYP1P07311 99 aa8.2□□□□□ -1.1
CUX1-204ENST00000393824 CFHR3Q02985 330 aa8.2□□□□□ -1.1
CUX1-204ENST00000393824 SUMO4Q6EEV6 95 aa8.2□□□□□ -1.1
CUX1-204ENST00000393824 LST1O00453 97 aa8.2□□□□□ -1.1
CUX1-204ENST00000393824 NDUFA4O00483 81 aa8.2□□□□□ -1.1
CUX1-204ENST00000393824 Q6ZSV7 163 aa8.2□□□□□ -1.1
CUX1-204ENST00000393824 WNK1Q9H4A3 2382 aa8.2□□□□□ -1.1
CUX1-204ENST00000393824 TRGV11A0A075B6L2 103 aa8.19□□□□□ -1.1
CUX1-204ENST00000393824 NSUN5P1Q3KNT7 163 aa8.19□□□□□ -1.1
CUX1-204ENST00000393824 KIR2DL5BQ8NHK3 375 aa8.19□□□□□ -1.1
CUX1-204ENST00000393824 FAM236AA0A1B0GUQ0 79 aa8.19□□□□□ -1.1
CUX1-204ENST00000393824 FAM236BA0A1B0GV22 79 aa8.19□□□□□ -1.1
CUX1-204ENST00000393824 HILS1P60008 231 aa8.19□□□□□ -1.1
CUX1-204ENST00000393824 RHOHQ15669 191 aa8.19□□□□□ -1.1
CUX1-204ENST00000393824 KLK5Q9Y337 293 aaPredicted RBP8.19□□□□□ -1.1
CUX1-204ENST00000393824 F8WDY8 70 aa8.18□□□□□ -1.1
CUX1-204ENST00000393824 TRBV12-3P01733 135 aa8.18□□□□□ -1.1
CUX1-204ENST00000393824 MUC4Q99102 2169 aa8.18□□□□□ -1.1
CUX1-204ENST00000393824 IGLV1-40P01703 118 aa8.18□□□□□ -1.1
CUX1-204ENST00000393824 RNASE4P34096 147 aaKnown RBP8.18□□□□□ -1.1
CUX1-204ENST00000393824 DEFB104AQ8WTQ1 72 aa8.18□□□□□ -1.1
CUX1-204ENST00000393824 IGHV3-11P01762 117 aa8.17□□□□□ -1.1
CUX1-204ENST00000393824 TMEM86BQ8N661 226 aa8.17□□□□□ -1.1
CUX1-204ENST00000393824 OPRPNQ99935 248 aaPredicted RBP8.17□□□□□ -1.1
CUX1-204ENST00000393824 IGHV3-64A0A075B6Q5 118 aa8.17□□□□□ -1.1
CUX1-204ENST00000393824 H3BUA1 57 aa8.17□□□□□ -1.1
CUX1-204ENST00000393824 ATP5G1P05496 136 aa8.17□□□□□ -1.1
CUX1-204ENST00000393824 RNASE1P07998 156 aaKnown RBP8.17□□□□□ -1.1
CUX1-204ENST00000393824 IGHV3-30-3P0DP02 117 aa8.17□□□□□ -1.1
CUX1-204ENST00000393824 Q8N2B8 174 aa8.17□□□□□ -1.1
CUX1-204ENST00000393824 A0A0J9YXV3 536 aa8.16□□□□□ -1.1
CUX1-204ENST00000393824 PRSS2P07478 247 aa8.16□□□□□ -1.1
CUX1-204ENST00000393824 PSMB8P28062 276 aa8.16□□□□□ -1.1
CUX1-204ENST00000393824 C18orf65Q6ZTR6 163 aa8.16□□□□□ -1.1
CUX1-204ENST00000393824 CLEC2BQ92478 149 aa8.16□□□□□ -1.1
CUX1-204ENST00000393824 JPT2Q9H910 190 aa8.16□□□□□ -1.1
CUX1-204ENST00000393824 F5H697 171 aa8.15□□□□□ -1.1
CUX1-204ENST00000393824 I3L3M4 83 aa8.15□□□□□ -1.1
CUX1-204ENST00000393824 GAGE2AQ6NT46 116 aa8.15□□□□□ -1.1
CUX1-204ENST00000393824 SDIM1Q6ZPB5 146 aa8.15□□□□□ -1.1
CUX1-204ENST00000393824 LINC00643Q86TS7 51 aa8.15□□□□□ -1.1
CUX1-204ENST00000393824 C11orf44Q8N8P7 122 aa8.15□□□□□ -1.1
CUX1-204ENST00000393824 C20orf203Q8NBC4 194 aa8.15□□□□□ -1.1
CUX1-204ENST00000393824 USMG5Q96IX5 58 aa8.15□□□□□ -1.1
CUX1-204ENST00000393824 KLLNB2CW77 178 aa8.15□□□□□ -1.1
CUX1-204ENST00000393824 ADAMTSL4-AS1Q5T5F5 129 aa8.15□□□□□ -1.1
CUX1-204ENST00000393824 CEMP1Q6PRD7 247 aaPredicted RBP8.15□□□□□ -1.1
CUX1-204ENST00000393824 ZNF580Q9UK33 172 aa8.15□□□□□ -1.1
CUX1-204ENST00000393824 A0A087WWL8 130 aa8.14□□□□□ -1.11
CUX1-204ENST00000393824 MIAQ16674 131 aa8.14□□□□□ -1.11
CUX1-204ENST00000393824 TMEM61Q8N0U2 210 aa8.14□□□□□ -1.11
CUX1-204ENST00000393824 LINC01006Q8NI28 216 aa8.14□□□□□ -1.11
CUX1-204ENST00000393824 DCANP1Q8TF63 244 aa8.14□□□□□ -1.11
CUX1-204ENST00000393824 ZNF256Q9Y2P7 627 aaPredicted RBP8.14□□□□□ -1.11
CUX1-204ENST00000393824 STAB1Q9NY15 2570 aa8.14□□□□□ -1.11
CUX1-204ENST00000393824 COL6A5A8TX70 2615 aa8.14□□□□□ -1.11
CUX1-204ENST00000393824 IGLV4-3A0A075B6K6 122 aa8.14□□□□□ -1.11
CUX1-204ENST00000393824 M0QY20 66 aa8.14□□□□□ -1.11
CUX1-204ENST00000393824 TIMM21Q9BVV7 248 aa8.14□□□□□ -1.11
CUX1-204ENST00000393824 CRYGAP11844 174 aa8.13□□□□□ -1.11
CUX1-204ENST00000393824 COX7CP15954 63 aa8.13□□□□□ -1.11
CUX1-204ENST00000393824 MRPS36P82909 103 aaKnown RBP8.13□□□□□ -1.11
CUX1-204ENST00000393824 IGHV1-58A0A0C4DH39 117 aa8.13□□□□□ -1.11
CUX1-204ENST00000393824 CXCL5P42830 114 aa8.13□□□□□ -1.11
CUX1-204ENST00000393824 DEFB1P60022 68 aa8.13□□□□□ -1.11
CUX1-204ENST00000393824 C4orf26Q17RF5 130 aa8.13□□□□□ -1.11
CUX1-204ENST00000393824 UNQ9165/PRO28630Q6UXU0 137 aa8.13□□□□□ -1.11
CUX1-204ENST00000393824 ADARB2-AS1A8MUL3 147 aa8.12□□□□□ -1.11
CUX1-204ENST00000393824 NDUFA12Q9UI09 145 aa8.12□□□□□ -1.11
CUX1-204ENST00000393824 PYGO1Q9Y3Y4 419 aa8.12□□□□□ -1.11
CUX1-204ENST00000393824 TRAV8-3A0A0A6YYJ7 113 aa8.12□□□□□ -1.11
CUX1-204ENST00000393824 DEFB136Q30KP8 78 aa8.12□□□□□ -1.11
CUX1-204ENST00000393824 C5orf38Q86SI9 138 aa8.12□□□□□ -1.11
CUX1-204ENST00000393824 SMCR5Q8TEV8 140 aa8.12□□□□□ -1.11
CUX1-204ENST00000393824 DPH3Q96FX2 82 aa8.12□□□□□ -1.11
CUX1-204ENST00000393824 F6UB75 175 aa8.11□□□□□ -1.11
CUX1-204ENST00000393824 TIMM17BO60830 172 aa8.11□□□□□ -1.11
CUX1-204ENST00000393824 EDN2P20800 178 aa8.11□□□□□ -1.11
CUX1-204ENST00000393824 HRCT1Q6UXD1 115 aa8.11□□□□□ -1.11
CUX1-204ENST00000393824 K7EMT4 169 aa8.11□□□□□ -1.11
CUX1-204ENST00000393824 KRTAP10-3P60369 221 aa8.11□□□□□ -1.11
CUX1-204ENST00000393824 C9orf85Q96MD7 179 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 108.3 ms