RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 SS18L2Q9UHA2 77 aa7.54□□□□□ -1.2
COL6A3-205ENST00000392004 C20orf78Q9BR46 151 aa7.54□□□□□ -1.2
COL6A3-205ENST00000392004 RBAKDNA6NC62 111 aa7.54□□□□□ -1.2
COL6A3-205ENST00000392004 F8VRH5 84 aa7.53□□□□□ -1.2
COL6A3-205ENST00000392004 RHODO00212 210 aa7.53□□□□□ -1.2
COL6A3-205ENST00000392004 FOXI1Q12951 378 aa7.53□□□□□ -1.2
COL6A3-205ENST00000392004 TMEM263Q8WUH6 116 aaKnown RBP7.53□□□□□ -1.2
COL6A3-205ENST00000392004 C11orf21Q9P2W6 132 aa7.53□□□□□ -1.2
COL6A3-205ENST00000392004 ZNF815PA8K554 130 aa7.53□□□□□ -1.2
COL6A3-205ENST00000392004 SNCGO76070 127 aa7.53□□□□□ -1.2
COL6A3-205ENST00000392004 LENEPQ9Y5L5 61 aa7.53□□□□□ -1.2
COL6A3-205ENST00000392004 IGKV2D-24A0A075B6R9 120 aa7.52□□□□□ -1.21
COL6A3-205ENST00000392004 ORMDL2Q53FV1 153 aa7.52□□□□□ -1.21
COL6A3-205ENST00000392004 MEIG1Q5JSS6 88 aa7.52□□□□□ -1.21
COL6A3-205ENST00000392004 COX8CQ7Z4L0 72 aa7.52□□□□□ -1.21
COL6A3-205ENST00000392004 ZNF625Q96I27 306 aaPredicted RBP7.52□□□□□ -1.21
COL6A3-205ENST00000392004 LINC01549A6NIU2 74 aa7.52□□□□□ -1.21
COL6A3-205ENST00000392004 VCYO14598 125 aa7.52□□□□□ -1.21
COL6A3-205ENST00000392004 PPP1R17O96001 155 aa7.52□□□□□ -1.21
COL6A3-205ENST00000392004 CCL18P55774 89 aa7.52□□□□□ -1.21
COL6A3-205ENST00000392004 LINC01546A6NGU7 62 aa7.52□□□□□ -1.21
COL6A3-205ENST00000392004 HERVK_113P61574 105 aa7.52□□□□□ -1.21
COL6A3-205ENST00000392004 LY6G6CO95867 125 aa7.51□□□□□ -1.21
COL6A3-205ENST00000392004 ATP6V0E2Q8NHE4 81 aa7.51□□□□□ -1.21
COL6A3-205ENST00000392004 CNFNQ9BYD5 112 aa7.51□□□□□ -1.21
COL6A3-205ENST00000392004 LOC100131303A0A0U1RQF7 123 aa7.51□□□□□ -1.21
COL6A3-205ENST00000392004 RHOHQ15669 191 aa7.51□□□□□ -1.21
COL6A3-205ENST00000392004 SBSPONQ8IVN8 264 aa7.51□□□□□ -1.21
COL6A3-205ENST00000392004 PPDPFLQ8WWR9 84 aa7.51□□□□□ -1.21
COL6A3-205ENST00000392004 BSNQ9UPA5 3926 aa7.51□□□□□ -1.21
COL6A3-205ENST00000392004 TRBV7-3A0A075B6L6 115 aa7.51□□□□□ -1.21
COL6A3-205ENST00000392004 Q1RN00 199 aa7.51□□□□□ -1.21
COL6A3-205ENST00000392004 TRPT1Q86TN4 253 aaKnown RBP7.51□□□□□ -1.21
COL6A3-205ENST00000392004 TP53TG1Q9Y2A0 90 aa7.5□□□□□ -1.21
COL6A3-205ENST00000392004 TENM1Q9UKZ4 2725 aa7.5□□□□□ -1.21
COL6A3-205ENST00000392004 SUMO4Q6EEV6 95 aa7.5□□□□□ -1.21
COL6A3-205ENST00000392004 TRAV12-1A0A0B4J245 112 aa7.5□□□□□ -1.21
COL6A3-205ENST00000392004 TRBV7-9A0A0J9YWB2 115 aa7.5□□□□□ -1.21
COL6A3-205ENST00000392004 B5MCH6 92 aa7.5□□□□□ -1.21
COL6A3-205ENST00000392004 H7C2G1 150 aa7.5□□□□□ -1.21
COL6A3-205ENST00000392004 Q6ZTC4 211 aa7.5□□□□□ -1.21
COL6A3-205ENST00000392004 SMIM2Q9BVW6 85 aa7.5□□□□□ -1.21
COL6A3-205ENST00000392004 XCL1P47992 114 aa7.49□□□□□ -1.21
COL6A3-205ENST00000392004 GAGE2BQ13066 116 aa7.49□□□□□ -1.21
COL6A3-205ENST00000392004 GAGE2EQ4V326 116 aa7.49□□□□□ -1.21
COL6A3-205ENST00000392004 GAGE2DQ9UEU5 116 aa7.49□□□□□ -1.21
COL6A3-205ENST00000392004 MRPL23Q16540 153 aaKnown RBP7.49□□□□□ -1.21
COL6A3-205ENST00000392004 PRO0461Q9UI25 63 aa7.49□□□□□ -1.21
COL6A3-205ENST00000392004 KLK12Q9UKR0 248 aa7.49□□□□□ -1.21
COL6A3-205ENST00000392004 RBMY1BA6NDE4 496 aaKnown RBP7.49□□□□□ -1.21
COL6A3-205ENST00000392004 RBMY1EA6NEQ0 496 aaKnown RBP7.49□□□□□ -1.21
COL6A3-205ENST00000392004 RBMY1DP0C7P1 496 aaKnown RBP7.49□□□□□ -1.21
COL6A3-205ENST00000392004 FHL3Q13643 280 aa7.49□□□□□ -1.21
COL6A3-205ENST00000392004 CEMP1Q6PRD7 247 aaPredicted RBP7.49□□□□□ -1.21
COL6A3-205ENST00000392004 VSIG2Q96IQ7 327 aa7.49□□□□□ -1.21
COL6A3-205ENST00000392004 TMEM243Q9BU79 118 aa7.49□□□□□ -1.21
COL6A3-205ENST00000392004 C1orf158Q8N1D5 194 aa7.48□□□□□ -1.21
COL6A3-205ENST00000392004 MT-ATP8P03928 68 aa7.48□□□□□ -1.21
COL6A3-205ENST00000392004 CFAP126Q5VTH2 177 aa7.48□□□□□ -1.21
COL6A3-205ENST00000392004 SMIM20Q8N5G0 67 aa7.48□□□□□ -1.21
COL6A3-205ENST00000392004 PRO0255Q9UI72 69 aa7.48□□□□□ -1.21
COL6A3-205ENST00000392004 ICOSQ9Y6W8 199 aa7.48□□□□□ -1.21
COL6A3-205ENST00000392004 NPC2P61916 151 aa7.48□□□□□ -1.21
COL6A3-205ENST00000392004 Q6ZUT4 128 aa7.48□□□□□ -1.21
COL6A3-205ENST00000392004 RNF152Q8N8N0 203 aa7.48□□□□□ -1.21
COL6A3-205ENST00000392004 ZNF580Q9UK33 172 aa7.48□□□□□ -1.21
COL6A3-205ENST00000392004 C2orf66Q6UXQ4 117 aa7.47□□□□□ -1.21
COL6A3-205ENST00000392004 NRACQ8N912 160 aa7.47□□□□□ -1.21
COL6A3-205ENST00000392004 KLK5Q9Y337 293 aaPredicted RBP7.47□□□□□ -1.21
COL6A3-205ENST00000392004 TRBV20-1A0A075B6N2 111 aa7.47□□□□□ -1.21
COL6A3-205ENST00000392004 PAPPA-AS1Q5QFB9 102 aa7.47□□□□□ -1.21
COL6A3-205ENST00000392004 TEN1Q86WV5 123 aa7.47□□□□□ -1.21
COL6A3-205ENST00000392004 PTH2Q96A98 100 aa7.47□□□□□ -1.21
COL6A3-205ENST00000392004 LECT2O14960 151 aa7.46□□□□□ -1.21
COL6A3-205ENST00000392004 MIFP14174 115 aa7.46□□□□□ -1.21
COL6A3-205ENST00000392004 KRTAP10-11P60412 298 aa7.46□□□□□ -1.21
COL6A3-205ENST00000392004 RPL39P62891 51 aaKnown RBP7.46□□□□□ -1.21
COL6A3-205ENST00000392004 C5orf38Q86SI9 138 aa7.46□□□□□ -1.21
COL6A3-205ENST00000392004 I3L3M4 83 aa7.46□□□□□ -1.22
COL6A3-205ENST00000392004 K7EQD1 137 aa7.46□□□□□ -1.22
COL6A3-205ENST00000392004 PRSS29PA6NIE9 313 aa7.46□□□□□ -1.22
COL6A3-205ENST00000392004 TSPAN13O95857 204 aa7.46□□□□□ -1.22
COL6A3-205ENST00000392004 RPL13AP40429 203 aaKnown RBP7.46□□□□□ -1.22
COL6A3-205ENST00000392004 ZFP2Q6ZN57 461 aa7.45□□□□□ -1.22
COL6A3-205ENST00000392004 SLC25A29Q8N8R3 303 aa7.45□□□□□ -1.22
COL6A3-205ENST00000392004 TOMM6Q96B49 74 aa7.45□□□□□ -1.22
COL6A3-205ENST00000392004 PKD1L1Q8TDX9 2849 aa7.45□□□□□ -1.22
COL6A3-205ENST00000392004 OPRPNQ99935 248 aaPredicted RBP7.45□□□□□ -1.22
COL6A3-205ENST00000392004 CDIP1Q9H305 208 aa7.45□□□□□ -1.22
COL6A3-205ENST00000392004 LGALS3P17931 250 aaKnown RBP7.45□□□□□ -1.22
COL6A3-205ENST00000392004 RNF183Q96D59 192 aa7.45□□□□□ -1.22
COL6A3-205ENST00000392004 XGP55808 180 aa7.44□□□□□ -1.22
COL6A3-205ENST00000392004 KPRPQ5T749 579 aaPredicted RBP7.44□□□□□ -1.22
COL6A3-205ENST00000392004 NEXN-AS1Q8NBZ9 246 aa7.44□□□□□ -1.22
COL6A3-205ENST00000392004 C5orf47Q569G3 176 aa7.44□□□□□ -1.22
COL6A3-205ENST00000392004 C6orf226Q5I0X4 101 aa7.44□□□□□ -1.22
COL6A3-205ENST00000392004 OR13C6PQ8NH95 151 aa7.44□□□□□ -1.22
COL6A3-205ENST00000392004 BAALCQ8WXS3 180 aa7.44□□□□□ -1.22
COL6A3-205ENST00000392004 RNASE3P12724 160 aaKnown RBP7.44□□□□□ -1.22
COL6A3-205ENST00000392004 NFE4Q86UQ8 179 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms