RNA–Protein interactions for RNA: ENST00000380285.7

SNX1-202, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 8,119 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-202ENST00000380285 ADORA2A-AS1P86434 159 aa7.18□□□□□ -1.26
SNX1-202ENST00000380285 LRP4O75096 1905 aa7.18□□□□□ -1.26
SNX1-202ENST00000380285 MRPS12O15235 138 aaKnown RBP7.18□□□□□ -1.26
SNX1-202ENST00000380285 CASC2Q6XLA1 102 aa7.18□□□□□ -1.26
SNX1-202ENST00000380285 SPG11Q96JI7 2443 aa7.18□□□□□ -1.26
SNX1-202ENST00000380285 OTOGLQ3ZCN5 2332 aa7.18□□□□□ -1.26
SNX1-202ENST00000380285 Q6JHZ5 121 aa7.18□□□□□ -1.26
SNX1-202ENST00000380285 COL5A1P20908 1838 aaPredicted RBP7.18□□□□□ -1.26
SNX1-202ENST00000380285 USP17L23D6RBM5 183 aa7.18□□□□□ -1.26
SNX1-202ENST00000380285 FAM19A3Q7Z5A8 133 aa7.17□□□□□ -1.26
SNX1-202ENST00000380285 MRGPRG-AS1Q2M3A8 158 aa7.17□□□□□ -1.26
SNX1-202ENST00000380285 CSPG4Q6UVK1 2322 aa7.17□□□□□ -1.26
SNX1-202ENST00000380285 FAM208BQ5VWN6 2430 aa7.17□□□□□ -1.26
SNX1-202ENST00000380285 F8W735 103 aaPredicted RBP7.16□□□□□ -1.26
SNX1-202ENST00000380285 MSMPQ1L6U9 139 aa7.16□□□□□ -1.26
SNX1-202ENST00000380285 CEMP1Q6PRD7 247 aaPredicted RBP7.16□□□□□ -1.26
SNX1-202ENST00000380285 PTPRBP23467 1997 aa7.16□□□□□ -1.26
SNX1-202ENST00000380285 MUC22E2RYF6 1773 aaPredicted RBP7.16□□□□□ -1.26
SNX1-202ENST00000380285 CHCHD10Q8WYQ3 142 aaPredicted RBP7.16□□□□□ -1.26
SNX1-202ENST00000380285 TRBV6-8A0A0A6YYG3 113 aa7.16□□□□□ -1.26
SNX1-202ENST00000380285 MPLKIPQ8TAP9 179 aa7.16□□□□□ -1.26
SNX1-202ENST00000380285 DHRS4-AS1Q9P1J3 65 aa7.16□□□□□ -1.26
SNX1-202ENST00000380285 LINC00269Q8N2A0 174 aa7.15□□□□□ -1.26
SNX1-202ENST00000380285 NAV3Q8IVL0 2385 aa7.15□□□□□ -1.26
SNX1-202ENST00000380285 KLK5Q9Y337 293 aaPredicted RBP7.15□□□□□ -1.27
SNX1-202ENST00000380285 POLR2KP53803 58 aaKnown RBP7.14□□□□□ -1.27
SNX1-202ENST00000380285 IL17DQ8TAD2 202 aa7.14□□□□□ -1.27
SNX1-202ENST00000380285 SMIM26A0A096LP01 95 aa7.14□□□□□ -1.27
SNX1-202ENST00000380285 TSHBP01222 138 aa7.14□□□□□ -1.27
SNX1-202ENST00000380285 SMAD5-AS1Q9Y6J3 95 aa7.14□□□□□ -1.27
SNX1-202ENST00000380285 KLLNB2CW77 178 aa7.14□□□□□ -1.27
SNX1-202ENST00000380285 DEFB135Q30KP9 77 aa7.14□□□□□ -1.27
SNX1-202ENST00000380285 LMO4P61968 165 aa7.14□□□□□ -1.27
SNX1-202ENST00000380285 Q6ZTI0 123 aa7.13□□□□□ -1.27
SNX1-202ENST00000380285 XGP55808 180 aa7.13□□□□□ -1.27
SNX1-202ENST00000380285 DEFB114Q30KQ6 69 aa7.13□□□□□ -1.27
SNX1-202ENST00000380285 ADAMTS20P59510 1910 aa7.13□□□□□ -1.27
SNX1-202ENST00000380285 SERP1Q9Y6X1 66 aa7.13□□□□□ -1.27
SNX1-202ENST00000380285 DEFB1P60022 68 aa7.13□□□□□ -1.27
SNX1-202ENST00000380285 CD164L2Q6UWJ8 174 aa7.13□□□□□ -1.27
SNX1-202ENST00000380285 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.13□□□□□ -1.27
SNX1-202ENST00000380285 C9orf85Q96MD7 179 aa7.13□□□□□ -1.27
SNX1-202ENST00000380285 TRAV7A0A075B6U4 112 aa7.12□□□□□ -1.27
SNX1-202ENST00000380285 CCKP06307 115 aa7.12□□□□□ -1.27
SNX1-202ENST00000380285 Q6YL49 198 aa7.12□□□□□ -1.27
SNX1-202ENST00000380285 UBE2D4Q9Y2X8 147 aa7.12□□□□□ -1.27
SNX1-202ENST00000380285 MIFP14174 115 aa7.11□□□□□ -1.27
SNX1-202ENST00000380285 UBE2D1P51668 147 aa7.11□□□□□ -1.27
SNX1-202ENST00000380285 RNASE3P12724 160 aaKnown RBP7.11□□□□□ -1.27
SNX1-202ENST00000380285 C1orf229Q6ZS94 237 aaPredicted RBP7.11□□□□□ -1.27
SNX1-202ENST00000380285 CCDC179H3BU77 68 aa7.11□□□□□ -1.27
SNX1-202ENST00000380285 M0R378 163 aa7.11□□□□□ -1.27
SNX1-202ENST00000380285 C6orf99Q4VX62 202 aa7.11□□□□□ -1.27
SNX1-202ENST00000380285 Q8N976 141 aa7.11□□□□□ -1.27
SNX1-202ENST00000380285 LINC00526Q96FQ7 95 aa7.11□□□□□ -1.27
SNX1-202ENST00000380285 TECTAO75443 2155 aa7.11□□□□□ -1.27
SNX1-202ENST00000380285 COX8CQ7Z4L0 72 aa7.11□□□□□ -1.27
SNX1-202ENST00000380285 Q8N6K4 173 aa7.1□□□□□ -1.27
SNX1-202ENST00000380285 UBE2D3P61077 147 aa7.1□□□□□ -1.27
SNX1-202ENST00000380285 UBE2D2P62837 147 aa7.1□□□□□ -1.27
SNX1-202ENST00000380285 SRCAPQ6ZRS2 3230 aa7.1□□□□□ -1.27
SNX1-202ENST00000380285 RAI1Q7Z5J4 1906 aaPredicted RBP7.1□□□□□ -1.27
SNX1-202ENST00000380285 Q8IZM0 81 aa7.09□□□□□ -1.27
SNX1-202ENST00000380285 ACACBO00763 2458 aa7.09□□□□□ -1.27
SNX1-202ENST00000380285 IGIPA6NJ69 53 aa7.09□□□□□ -1.27
SNX1-202ENST00000380285 SMIM11BQ8TCY0 68 aa7.09□□□□□ -1.27
SNX1-202ENST00000380285 HIVEP2P31629 2446 aa7.09□□□□□ -1.28
SNX1-202ENST00000380285 PTPRSQ13332 1948 aa7.09□□□□□ -1.28
SNX1-202ENST00000380285 DNAJC9-AS1A6NH13 148 aa7.09□□□□□ -1.28
SNX1-202ENST00000380285 PRORYQ9H606 182 aa7.09□□□□□ -1.28
SNX1-202ENST00000380285 SLPIP03973 132 aa7.08□□□□□ -1.28
SNX1-202ENST00000380285 ZNF706Q9Y5V0 76 aaPredicted RBP7.08□□□□□ -1.28
SNX1-202ENST00000380285 LINC00310P59036 64 aa7.08□□□□□ -1.28
SNX1-202ENST00000380285 C11orf45Q8TAV5 145 aa7.08□□□□□ -1.28
SNX1-202ENST00000380285 RPL28P46779 137 aaKnown RBP7.08□□□□□ -1.28
SNX1-202ENST00000380285 ESM1Q9NQ30 184 aa7.08□□□□□ -1.28
SNX1-202ENST00000380285 Q8NA96 180 aa7.07□□□□□ -1.28
SNX1-202ENST00000380285 WFDC11Q8NEX6 87 aa7.07□□□□□ -1.28
SNX1-202ENST00000380285 A0A1W2PNU3 283 aaPredicted RBP7.07□□□□□ -1.28
SNX1-202ENST00000380285 PSMG3-AS1Q96PY0 264 aa7.07□□□□□ -1.28
SNX1-202ENST00000380285 CRYGDP07320 174 aa7.07□□□□□ -1.28
SNX1-202ENST00000380285 SYCNQ0VAF6 134 aa7.07□□□□□ -1.28
SNX1-202ENST00000380285 LINC01548A6NM66 108 aa7.06□□□□□ -1.28
SNX1-202ENST00000380285 A6NED7 52 aa7.06□□□□□ -1.28
SNX1-202ENST00000380285 HIGD2AQ9BW72 106 aa7.06□□□□□ -1.28
SNX1-202ENST00000380285 Q6ZQY7 126 aa7.06□□□□□ -1.28
SNX1-202ENST00000380285 LELP1Q5T871 98 aa7.05□□□□□ -1.28
SNX1-202ENST00000380285 SERTAD4-AS1Q5TG53 156 aa7.05□□□□□ -1.28
SNX1-202ENST00000380285 SHISA2Q6UWI4 295 aa7.05□□□□□ -1.28
SNX1-202ENST00000380285 Q6ZS46 218 aa7.05□□□□□ -1.28
SNX1-202ENST00000380285 LINC00694P0DN24 101 aa7.05□□□□□ -1.28
SNX1-202ENST00000380285 FAM19A1Q7Z5A9 133 aa7.05□□□□□ -1.28
SNX1-202ENST00000380285 CSDC2Q9Y534 153 aaKnown RBP7.05□□□□□ -1.28
SNX1-202ENST00000380285 C11orf71Q6IPW1 123 aa7.05□□□□□ -1.28
SNX1-202ENST00000380285 IGLV4-69A0A075B6H9 119 aa7.05□□□□□ -1.28
SNX1-202ENST00000380285 MUC6Q6W4X9 2439 aa7.04□□□□□ -1.28
SNX1-202ENST00000380285 C1orf158Q8N1D5 194 aa7.04□□□□□ -1.28
SNX1-202ENST00000380285 LINC00959A0A1B0GUT2 108 aa7.04□□□□□ -1.28
SNX1-202ENST00000380285 CDC42SE2Q9NRR3 84 aa7.04□□□□□ -1.28
SNX1-202ENST00000380285 ZNF73O43830 326 aaPredicted RBP7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms