RNA–Protein interactions for RNA: ENST00000373887.7

TRAF1-201, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 6,324 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-201ENST00000373887 ZFAND3Q9H8U3 227 aa10.7□□□□□ -0.7
TRAF1-201ENST00000373887 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.7□□□□□ -0.7
TRAF1-201ENST00000373887 WFDC10AQ9H1F0 79 aa10.7□□□□□ -0.7
TRAF1-201ENST00000373887 NCOA6Q14686 2063 aaPredicted RBP10.7□□□□□ -0.7
TRAF1-201ENST00000373887 C9orf85Q96MD7 179 aa10.7□□□□□ -0.7
TRAF1-201ENST00000373887 SERP1Q9Y6X1 66 aa10.7□□□□□ -0.7
TRAF1-201ENST00000373887 LINC00322Q6ZN03 302 aaPredicted RBP10.69□□□□□ -0.7
TRAF1-201ENST00000373887 UBE2D4Q9Y2X8 147 aa10.69□□□□□ -0.7
TRAF1-201ENST00000373887 TNCP24821 2201 aa10.69□□□□□ -0.7
TRAF1-201ENST00000373887 TMEM223A0PJW6 202 aa10.69□□□□□ -0.7
TRAF1-201ENST00000373887 TRIAP1O43715 76 aa10.69□□□□□ -0.7
TRAF1-201ENST00000373887 IL17DQ8TAD2 202 aa10.69□□□□□ -0.7
TRAF1-201ENST00000373887 C20orf173Q96LM9 149 aa10.69□□□□□ -0.7
TRAF1-201ENST00000373887 IGF1P05019 195 aa10.69□□□□□ -0.7
TRAF1-201ENST00000373887 FAM30AQ9NZY2 134 aa10.69□□□□□ -0.7
TRAF1-201ENST00000373887 NEXN-AS1Q8NBZ9 246 aa10.68□□□□□ -0.7
TRAF1-201ENST00000373887 Q6ZS46 218 aa10.68□□□□□ -0.7
TRAF1-201ENST00000373887 LINC00526Q96FQ7 95 aa10.68□□□□□ -0.7
TRAF1-201ENST00000373887 RETNQ9HD89 108 aa10.68□□□□□ -0.7
TRAF1-201ENST00000373887 SPANXB1Q9NS25 103 aaPredicted RBP10.68□□□□□ -0.7
TRAF1-201ENST00000373887 LINC00308Q8TCZ7 52 aa10.68□□□□□ -0.7
TRAF1-201ENST00000373887 C6orf99Q4VX62 202 aa10.67□□□□□ -0.7
TRAF1-201ENST00000373887 GDF5OSQ5U4N7 250 aa10.67□□□□□ -0.7
TRAF1-201ENST00000373887 PROK1P58294 105 aa10.67□□□□□ -0.7
TRAF1-201ENST00000373887 MED12LQ86YW9 2145 aa10.67□□□□□ -0.7
TRAF1-201ENST00000373887 IGLV9-49A0A0B4J1Y8 123 aa10.67□□□□□ -0.7
TRAF1-201ENST00000373887 ARHGAP21Q5T5U3 1957 aa10.67□□□□□ -0.7
TRAF1-201ENST00000373887 A8MZ25 164 aa10.66□□□□□ -0.7
TRAF1-201ENST00000373887 LINC01006Q8NI28 216 aa10.66□□□□□ -0.7
TRAF1-201ENST00000373887 PCNX3Q9H6A9 2034 aa10.66□□□□□ -0.7
TRAF1-201ENST00000373887 CSPG4Q6UVK1 2322 aa10.66□□□□□ -0.7
TRAF1-201ENST00000373887 ZNF702PQ9H963 129 aa10.66□□□□□ -0.7
TRAF1-201ENST00000373887 ZNF22P17026 224 aaPredicted RBP10.66□□□□□ -0.7
TRAF1-201ENST00000373887 C7orf33Q8WU49 177 aa10.66□□□□□ -0.7
TRAF1-201ENST00000373887 DSCAML1Q8TD84 2053 aa10.65□□□□□ -0.7
TRAF1-201ENST00000373887 IGLV4-3A0A075B6K6 122 aa10.65□□□□□ -0.7
TRAF1-201ENST00000373887 Q6ZPA2 131 aa10.65□□□□□ -0.7
TRAF1-201ENST00000373887 ALPK3Q96L96 1907 aa10.65□□□□□ -0.7
TRAF1-201ENST00000373887 MRPS12O15235 138 aaKnown RBP10.65□□□□□ -0.7
TRAF1-201ENST00000373887 TRBV27A0A0K0K1C4 114 aa10.65□□□□□ -0.7
TRAF1-201ENST00000373887 RPL37AP8A6NKH3 93 aa10.65□□□□□ -0.7
TRAF1-201ENST00000373887 UBE2D3P61077 147 aa10.65□□□□□ -0.7
TRAF1-201ENST00000373887 OXLD1Q5BKU9 147 aa10.65□□□□□ -0.7
TRAF1-201ENST00000373887 ATP5EP2Q5VTU8 51 aa10.65□□□□□ -0.7
TRAF1-201ENST00000373887 MAPKAPK5-AS1Q8N8E1 139 aa10.65□□□□□ -0.7
TRAF1-201ENST00000373887 ACACBO00763 2458 aa10.65□□□□□ -0.7
TRAF1-201ENST00000373887 LY6G6CO95867 125 aa10.65□□□□□ -0.71
TRAF1-201ENST00000373887 POM121L12Q8N7R1 296 aa10.64□□□□□ -0.71
TRAF1-201ENST00000373887 TIMM17BO60830 172 aa10.64□□□□□ -0.71
TRAF1-201ENST00000373887 Q8N976 141 aa10.64□□□□□ -0.71
TRAF1-201ENST00000373887 LYRM9A8MSI8 78 aa10.64□□□□□ -0.71
TRAF1-201ENST00000373887 BRWD1-AS2P59051 145 aa10.64□□□□□ -0.71
TRAF1-201ENST00000373887 Q8N9L7 120 aa10.64□□□□□ -0.71
TRAF1-201ENST00000373887 LY6LH3BQJ8 138 aa10.63□□□□□ -0.71
TRAF1-201ENST00000373887 A0A1B0GXF2 115 aa10.63□□□□□ -0.71
TRAF1-201ENST00000373887 IBA57-AS1B1ANH7 110 aa10.62□□□□□ -0.71
TRAF1-201ENST00000373887 CFAP126Q5VTH2 177 aa10.62□□□□□ -0.71
TRAF1-201ENST00000373887 TRBV6-5A0A0K0K1A5 114 aa10.62□□□□□ -0.71
TRAF1-201ENST00000373887 SYCNQ0VAF6 134 aa10.62□□□□□ -0.71
TRAF1-201ENST00000373887 PRM2P04554 102 aa10.62□□□□□ -0.71
TRAF1-201ENST00000373887 FAM19A3Q7Z5A8 133 aa10.61□□□□□ -0.71
TRAF1-201ENST00000373887 TRBV6-8A0A0A6YYG3 113 aa10.61□□□□□ -0.71
TRAF1-201ENST00000373887 IGLV2-8P01709 118 aa10.61□□□□□ -0.71
TRAF1-201ENST00000373887 K7EQG2 157 aa10.61□□□□□ -0.71
TRAF1-201ENST00000373887 TANC2Q9HCD6 1990 aa10.6□□□□□ -0.71
TRAF1-201ENST00000373887 H7C423 109 aa10.6□□□□□ -0.71
TRAF1-201ENST00000373887 BBC3Q96PG8 261 aaPredicted RBP10.6□□□□□ -0.71
TRAF1-201ENST00000373887 AVPP01185 164 aa10.6□□□□□ -0.71
TRAF1-201ENST00000373887 Q6ZQY7 126 aa10.6□□□□□ -0.71
TRAF1-201ENST00000373887 NDUFA7O95182 113 aa10.59□□□□□ -0.71
TRAF1-201ENST00000373887 PRR14LQ5THK1 2151 aa10.58□□□□□ -0.72
TRAF1-201ENST00000373887 CCDC179H3BU77 68 aa10.58□□□□□ -0.72
TRAF1-201ENST00000373887 TRBV30A0A0K0K1B3 111 aa10.58□□□□□ -0.72
TRAF1-201ENST00000373887 RETNLBQ9BQ08 111 aa10.58□□□□□ -0.72
TRAF1-201ENST00000373887 HIVEP3Q5T1R4 2406 aa10.58□□□□□ -0.72
TRAF1-201ENST00000373887 CRIP3Q6Q6R5 217 aa10.57□□□□□ -0.72
TRAF1-201ENST00000373887 LINC00574Q9H8X3 128 aa10.57□□□□□ -0.72
TRAF1-201ENST00000373887 LOC100131303A0A0U1RQF7 123 aa10.57□□□□□ -0.72
TRAF1-201ENST00000373887 SERP2Q8N6R1 65 aa10.57□□□□□ -0.72
TRAF1-201ENST00000373887 SMIM9A6NGZ8 99 aa10.57□□□□□ -0.72
TRAF1-201ENST00000373887 PTPRSQ13332 1948 aa10.57□□□□□ -0.72
TRAF1-201ENST00000373887 ATP5EP56381 51 aaPredicted RBP10.57□□□□□ -0.72
TRAF1-201ENST00000373887 UBE2D2P62837 147 aa10.57□□□□□ -0.72
TRAF1-201ENST00000373887 C1orf195Q5TG92 126 aa10.57□□□□□ -0.72
TRAF1-201ENST00000373887 PSMG3-AS1Q96PY0 264 aa10.57□□□□□ -0.72
TRAF1-201ENST00000373887 ODF3Q96PU9 254 aa10.57□□□□□ -0.72
TRAF1-201ENST00000373887 CELA1Q9UNI1 258 aa10.57□□□□□ -0.72
TRAF1-201ENST00000373887 Q6ZVQ6 151 aa10.56□□□□□ -0.72
TRAF1-201ENST00000373887 WNK1Q9H4A3 2382 aa10.56□□□□□ -0.72
TRAF1-201ENST00000373887 M0QY20 66 aa10.56□□□□□ -0.72
TRAF1-201ENST00000373887 PRRC2AP48634 2157 aaKnown RBP10.56□□□□□ -0.72
TRAF1-201ENST00000373887 MUC22E2RYF6 1773 aaPredicted RBP10.56□□□□□ -0.72
TRAF1-201ENST00000373887 SONP18583 2426 aaKnown RBP10.56□□□□□ -0.72
TRAF1-201ENST00000373887 KIAA1549Q9HCM3 1950 aa10.56□□□□□ -0.72
TRAF1-201ENST00000373887 ANKHD1Q8IWZ3 2542 aaKnown RBP10.56□□□□□ -0.72
TRAF1-201ENST00000373887 ZNF706Q9Y5V0 76 aaPredicted RBP10.56□□□□□ -0.72
TRAF1-201ENST00000373887 PLAC8L1A1L4L8 177 aa10.55□□□□□ -0.72
TRAF1-201ENST00000373887 NANOS2P60321 138 aaKnown RBP10.55□□□□□ -0.72
TRAF1-201ENST00000373887 X6R8D5 127 aa10.55□□□□□ -0.72
TRAF1-201ENST00000373887 NDUFC1O43677 76 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms