RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 NACAE9PAV3 2078 aa10.27□□□□□ -0.77
CD48-201ENST00000368045 K7EQD1 137 aa10.26□□□□□ -0.77
CD48-201ENST00000368045 COX6CP09669 75 aa10.26□□□□□ -0.77
CD48-201ENST00000368045 CIRBPQ14011 172 aaKnown RBP10.26□□□□□ -0.77
CD48-201ENST00000368045 TMEM101Q96IK0 257 aa10.26□□□□□ -0.77
CD48-201ENST00000368045 ICOSQ9Y6W8 199 aa10.26□□□□□ -0.77
CD48-201ENST00000368045 IGHV3OR16-12A0A075B7B8 117 aa10.26□□□□□ -0.77
CD48-201ENST00000368045 TRBV10-2A0A0K0K1G8 114 aa10.26□□□□□ -0.77
CD48-201ENST00000368045 COPS9Q8WXC6 57 aa10.26□□□□□ -0.77
CD48-201ENST00000368045 FBN2P35556 2912 aa10.25□□□□□ -0.77
CD48-201ENST00000368045 A0A1B0GV72 72 aa10.25□□□□□ -0.77
CD48-201ENST00000368045 MAP1AP78559 2803 aaPredicted RBP10.24□□□□□ -0.77
CD48-201ENST00000368045 CIDEAO60543 219 aa10.24□□□□□ -0.77
CD48-201ENST00000368045 NAV2Q8IVL1 2488 aa10.24□□□□□ -0.77
CD48-201ENST00000368045 A8MZ25 164 aa10.24□□□□□ -0.77
CD48-201ENST00000368045 RPL13AP40429 203 aaKnown RBP10.24□□□□□ -0.77
CD48-201ENST00000368045 LINC00242Q5T6M2 205 aa10.24□□□□□ -0.77
CD48-201ENST00000368045 FAM110AQ9BQ89 295 aa10.24□□□□□ -0.77
CD48-201ENST00000368045 FAM208BQ5VWN6 2430 aa10.23□□□□□ -0.77
CD48-201ENST00000368045 POLQO75417 2590 aa10.22□□□□□ -0.77
CD48-201ENST00000368045 H3BT86 120 aa10.22□□□□□ -0.77
CD48-201ENST00000368045 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.22□□□□□ -0.77
CD48-201ENST00000368045 ZNF462Q96JM2 2506 aa10.22□□□□□ -0.77
CD48-201ENST00000368045 A0A1W2PRX2 142 aa10.21□□□□□ -0.77
CD48-201ENST00000368045 XGP55808 180 aa10.21□□□□□ -0.77
CD48-201ENST00000368045 COX6A2Q02221 97 aa10.21□□□□□ -0.77
CD48-201ENST00000368045 Q6ZTI0 123 aa10.21□□□□□ -0.77
CD48-201ENST00000368045 PPDPFQ9H3Y8 114 aa10.21□□□□□ -0.77
CD48-201ENST00000368045 UBR5O95071 2799 aaPredicted RBP10.21□□□□□ -0.77
CD48-201ENST00000368045 PTPN13Q12923 2485 aa10.21□□□□□ -0.78
CD48-201ENST00000368045 ZANQ9Y493 2812 aa10.21□□□□□ -0.78
CD48-201ENST00000368045 SMIM1B2RUZ4 78 aa10.21□□□□□ -0.78
CD48-201ENST00000368045 NTM-AS1Q6ZSK4 140 aa10.21□□□□□ -0.78
CD48-201ENST00000368045 C16orf74Q96GX8 76 aa10.21□□□□□ -0.78
CD48-201ENST00000368045 C16orf95Q9H693 158 aa10.21□□□□□ -0.78
CD48-201ENST00000368045 H7C423 109 aa10.2□□□□□ -0.78
CD48-201ENST00000368045 MT-ATP8P03928 68 aa10.2□□□□□ -0.78
CD48-201ENST00000368045 LINC00694P0DN24 101 aa10.2□□□□□ -0.78
CD48-201ENST00000368045 HERV-K104P63124 156 aa10.2□□□□□ -0.78
CD48-201ENST00000368045 LINC00308Q8TCZ7 52 aa10.2□□□□□ -0.78
CD48-201ENST00000368045 NTN5Q8WTR8 489 aaPredicted RBP10.2□□□□□ -0.78
CD48-201ENST00000368045 Q9H8V8 135 aa10.2□□□□□ -0.78
CD48-201ENST00000368045 CDC42SE2Q9NRR3 84 aa10.2□□□□□ -0.78
CD48-201ENST00000368045 LRRK2Q5S007 2527 aa10.2□□□□□ -0.78
CD48-201ENST00000368045 UTP20O75691 2785 aaKnown RBP10.19□□□□□ -0.78
CD48-201ENST00000368045 LST1O00453 97 aa10.19□□□□□ -0.78
CD48-201ENST00000368045 ESM1Q9NQ30 184 aa10.19□□□□□ -0.78
CD48-201ENST00000368045 MXRA5Q9NR99 2828 aa10.19□□□□□ -0.78
CD48-201ENST00000368045 HIST2H2BDQ6DRA6 164 aa10.19□□□□□ -0.78
CD48-201ENST00000368045 CITED2Q99967 270 aaPredicted RBP10.19□□□□□ -0.78
CD48-201ENST00000368045 TMEM243Q9BU79 118 aa10.19□□□□□ -0.78
CD48-201ENST00000368045 GAGE12JA6NER3 117 aa10.18□□□□□ -0.78
CD48-201ENST00000368045 CKS1BP61024 79 aa10.18□□□□□ -0.78
CD48-201ENST00000368045 NPC2P61916 151 aa10.18□□□□□ -0.78
CD48-201ENST00000368045 GAGE4Q13068 117 aa10.18□□□□□ -0.78
CD48-201ENST00000368045 GAGE5Q13069 117 aa10.18□□□□□ -0.78
CD48-201ENST00000368045 C2orf82Q6UX34 121 aa10.18□□□□□ -0.78
CD48-201ENST00000368045 UBE2WQ96B02 151 aa10.18□□□□□ -0.78
CD48-201ENST00000368045 ZNF625Q96I27 306 aaPredicted RBP10.18□□□□□ -0.78
CD48-201ENST00000368045 NOP10Q9NPE3 64 aaKnown RBP10.18□□□□□ -0.78
CD48-201ENST00000368045 TRAV13-1A0A0B4J241 112 aa10.17□□□□□ -0.78
CD48-201ENST00000368045 TRBV6-4A0A1B0GX49 114 aa10.17□□□□□ -0.78
CD48-201ENST00000368045 F5H768 121 aa10.17□□□□□ -0.78
CD48-201ENST00000368045 RNASE1P07998 156 aaKnown RBP10.17□□□□□ -0.78
CD48-201ENST00000368045 GIG44P09565 113 aaPredicted RBP10.17□□□□□ -0.78
CD48-201ENST00000368045 CRYBG3Q68DQ2 2970 aa10.17□□□□□ -0.78
CD48-201ENST00000368045 C11orf44Q8N8P7 122 aa10.17□□□□□ -0.78
CD48-201ENST00000368045 WFDC11Q8NEX6 87 aa10.17□□□□□ -0.78
CD48-201ENST00000368045 OVOL2Q9BRP0 275 aa10.17□□□□□ -0.78
CD48-201ENST00000368045 UBE2L6O14933 153 aa10.16□□□□□ -0.78
CD48-201ENST00000368045 USP24Q9UPU5 2620 aa10.16□□□□□ -0.78
CD48-201ENST00000368045 PLAC8L1A1L4L8 177 aa10.16□□□□□ -0.78
CD48-201ENST00000368045 IGLV1-51P01701 117 aa10.16□□□□□ -0.78
CD48-201ENST00000368045 DAND5Q8N907 189 aa10.16□□□□□ -0.78
CD48-201ENST00000368045 LINC01006Q8NI28 216 aa10.16□□□□□ -0.78
CD48-201ENST00000368045 MYO9AB2RTY4 2548 aa10.16□□□□□ -0.78
CD48-201ENST00000368045 PRIMA1Q86XR5 153 aa10.15□□□□□ -0.78
CD48-201ENST00000368045 TRGV2A0A075B6R0 118 aa10.14□□□□□ -0.79
CD48-201ENST00000368045 TRAV8-4A0A0B4J246 113 aa10.14□□□□□ -0.79
CD48-201ENST00000368045 CLEC2BQ92478 149 aa10.14□□□□□ -0.79
CD48-201ENST00000368045 C19orf73Q9NVV2 129 aa10.14□□□□□ -0.79
CD48-201ENST00000368045 NDUFA7O95182 113 aa10.14□□□□□ -0.79
CD48-201ENST00000368045 DEFB121Q5J5C9 76 aa10.14□□□□□ -0.79
CD48-201ENST00000368045 TEX49A0A1B0GTD5 131 aa10.13□□□□□ -0.79
CD48-201ENST00000368045 GAGE7O76087 117 aa10.13□□□□□ -0.79
CD48-201ENST00000368045 GAGE12FP0CL80 117 aa10.13□□□□□ -0.79
CD48-201ENST00000368045 GAGE12GP0CL81 117 aa10.13□□□□□ -0.79
CD48-201ENST00000368045 GAGE12IP0CL82 117 aa10.13□□□□□ -0.79
CD48-201ENST00000368045 MEIG1Q5JSS6 88 aa10.13□□□□□ -0.79
CD48-201ENST00000368045 SHISA2Q6UWI4 295 aa10.13□□□□□ -0.79
CD48-201ENST00000368045 CITED1Q99966 193 aa10.13□□□□□ -0.79
CD48-201ENST00000368045 COX7A2LO14548 114 aa10.12□□□□□ -0.79
CD48-201ENST00000368045 MRPL23Q16540 153 aaKnown RBP10.12□□□□□ -0.79
CD48-201ENST00000368045 CSNK1G2-AS1Q8NCQ2 148 aa10.12□□□□□ -0.79
CD48-201ENST00000368045 FAM240AA0A1B0GVK7 77 aa10.11□□□□□ -0.79
CD48-201ENST00000368045 ZFYVE26Q68DK2 2539 aa10.11□□□□□ -0.79
CD48-201ENST00000368045 TEX15Q9BXT5 2789 aa10.11□□□□□ -0.79
CD48-201ENST00000368045 ABCA12Q86UK0 2595 aa10.11□□□□□ -0.79
CD48-201ENST00000368045 TRGV4A0A0C4DH28 118 aa10.11□□□□□ -0.79
CD48-201ENST00000368045 KRTAP1-1Q07627 177 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 86.3 ms