RNA–Protein interactions for RNA: ENST00000349124.2

PTP4A3-202, Transcript of protein tyrosine phosphatase type IVA, member 3, humanhuman

TSL 1 (best) BASIC

Gene PTP4A3, Length 2,710 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A3-202ENST00000349124 CKS1BP61024 79 aa13.04□□□□□ -0.32
PTP4A3-202ENST00000349124 ZNF625Q96I27 306 aaPredicted RBP13.04□□□□□ -0.32
PTP4A3-202ENST00000349124 PEMTQ9UBM1 199 aa13.04□□□□□ -0.32
PTP4A3-202ENST00000349124 LINC00694P0DN24 101 aa13.03□□□□□ -0.32
PTP4A3-202ENST00000349124 SPANXA1Q9NS26 97 aa13.03□□□□□ -0.32
PTP4A3-202ENST00000349124 LINC01620Q4KN68 170 aa13.03□□□□□ -0.32
PTP4A3-202ENST00000349124 ODF3L2Q3SX64 289 aa13.02□□□□□ -0.32
PTP4A3-202ENST00000349124 C4orf3Q8WVX3 66 aa13.02□□□□□ -0.32
PTP4A3-202ENST00000349124 UBR5O95071 2799 aaPredicted RBP13.02□□□□□ -0.33
PTP4A3-202ENST00000349124 ITPR3Q14573 2671 aa13.02□□□□□ -0.33
PTP4A3-202ENST00000349124 TEX49A0A1B0GTD5 131 aa13.01□□□□□ -0.33
PTP4A3-202ENST00000349124 TMEM101Q96IK0 257 aa13.01□□□□□ -0.33
PTP4A3-202ENST00000349124 Q96MF0 132 aa13.01□□□□□ -0.33
PTP4A3-202ENST00000349124 SETXQ7Z333 2677 aaKnown RBP13.01□□□□□ -0.33
PTP4A3-202ENST00000349124 TRGV1A0A0A0MS02 117 aa13.01□□□□□ -0.33
PTP4A3-202ENST00000349124 MIAQ16674 131 aa13.01□□□□□ -0.33
PTP4A3-202ENST00000349124 BEAN1Q3B7T3 259 aa13.01□□□□□ -0.33
PTP4A3-202ENST00000349124 C1orf158Q8N1D5 194 aa13.01□□□□□ -0.33
PTP4A3-202ENST00000349124 Q8N2B8 174 aa13.01□□□□□ -0.33
PTP4A3-202ENST00000349124 CLEC2BQ92478 149 aa13.01□□□□□ -0.33
PTP4A3-202ENST00000349124 ACANP16112 2415 aa13.01□□□□□ -0.33
PTP4A3-202ENST00000349124 RS1O15537 224 aa13□□□□□ -0.33
PTP4A3-202ENST00000349124 INSP01308 110 aa13□□□□□ -0.33
PTP4A3-202ENST00000349124 DGAT2L7PQ6IED9 249 aa13□□□□□ -0.33
PTP4A3-202ENST00000349124 ATXN8Q156A1 80 aa13□□□□□ -0.33
PTP4A3-202ENST00000349124 MTORP42345 2549 aa12.99□□□□□ -0.33
PTP4A3-202ENST00000349124 TRBV30A0A0K0K1B3 111 aa12.99□□□□□ -0.33
PTP4A3-202ENST00000349124 ICOSQ9Y6W8 199 aa12.99□□□□□ -0.33
PTP4A3-202ENST00000349124 A0A1B0GV72 72 aa12.99□□□□□ -0.33
PTP4A3-202ENST00000349124 ZFAND6Q6FIF0 208 aa12.99□□□□□ -0.33
PTP4A3-202ENST00000349124 SPANXDQ9BXN6 97 aa12.99□□□□□ -0.33
PTP4A3-202ENST00000349124 SPANXCQ9NY87 97 aa12.99□□□□□ -0.33
PTP4A3-202ENST00000349124 Q6ZTI0 123 aa12.98□□□□□ -0.33
PTP4A3-202ENST00000349124 TRAV13-1A0A0B4J241 112 aa12.97□□□□□ -0.33
PTP4A3-202ENST00000349124 PIK3CD-AS1Q5SR53 167 aa12.97□□□□□ -0.33
PTP4A3-202ENST00000349124 FLNAP21333 2647 aaKnown RBP12.97□□□□□ -0.33
PTP4A3-202ENST00000349124 LINC00242Q5T6M2 205 aa12.97□□□□□ -0.33
PTP4A3-202ENST00000349124 NTM-AS1Q6ZSK4 140 aa12.97□□□□□ -0.33
PTP4A3-202ENST00000349124 DEFB113Q30KQ7 82 aa12.96□□□□□ -0.33
PTP4A3-202ENST00000349124 STHQ8IWL8 128 aa12.96□□□□□ -0.33
PTP4A3-202ENST00000349124 DNAJC30Q96LL9 226 aa12.96□□□□□ -0.34
PTP4A3-202ENST00000349124 H7C423 109 aa12.95□□□□□ -0.34
PTP4A3-202ENST00000349124 Q9H8V8 135 aa12.95□□□□□ -0.34
PTP4A3-202ENST00000349124 PLA2G2AP14555 144 aa12.95□□□□□ -0.34
PTP4A3-202ENST00000349124 RPL13AP40429 203 aaKnown RBP12.95□□□□□ -0.34
PTP4A3-202ENST00000349124 TRBV10-2A0A0K0K1G8 114 aa12.94□□□□□ -0.34
PTP4A3-202ENST00000349124 GAGE12JA6NER3 117 aa12.94□□□□□ -0.34
PTP4A3-202ENST00000349124 CRLF1O75462 422 aa12.94□□□□□ -0.34
PTP4A3-202ENST00000349124 GAGE4Q13068 117 aa12.94□□□□□ -0.34
PTP4A3-202ENST00000349124 GAGE5Q13069 117 aa12.94□□□□□ -0.34
PTP4A3-202ENST00000349124 CITED2Q99967 270 aaPredicted RBP12.94□□□□□ -0.34
PTP4A3-202ENST00000349124 WFDC10AQ9H1F0 79 aa12.93□□□□□ -0.34
PTP4A3-202ENST00000349124 TIRAPP58753 221 aa12.93□□□□□ -0.34
PTP4A3-202ENST00000349124 C2orf82Q6UX34 121 aa12.93□□□□□ -0.34
PTP4A3-202ENST00000349124 IGLV5-45A0A087WSX0 123 aa12.92□□□□□ -0.34
PTP4A3-202ENST00000349124 NOP10Q9NPE3 64 aaKnown RBP12.92□□□□□ -0.34
PTP4A3-202ENST00000349124 NDUFA1O15239 70 aa12.91□□□□□ -0.34
PTP4A3-202ENST00000349124 KRTAP1-3Q8IUG1 177 aa12.91□□□□□ -0.34
PTP4A3-202ENST00000349124 TRAV26-1A0A087WT03 109 aa12.91□□□□□ -0.34
PTP4A3-202ENST00000349124 SOSTDC1Q6X4U4 206 aa12.91□□□□□ -0.34
PTP4A3-202ENST00000349124 FN1P02751 2386 aaKnown RBP12.9□□□□□ -0.34
PTP4A3-202ENST00000349124 TRAV4A0A0B4J268 109 aa12.9□□□□□ -0.34
PTP4A3-202ENST00000349124 LOC100131303A0A0U1RQF7 123 aa12.9□□□□□ -0.34
PTP4A3-202ENST00000349124 TMEM262E9PQX1 116 aa12.9□□□□□ -0.34
PTP4A3-202ENST00000349124 M0QXV9 152 aa12.9□□□□□ -0.34
PTP4A3-202ENST00000349124 LINC00308Q8TCZ7 52 aa12.9□□□□□ -0.34
PTP4A3-202ENST00000349124 ESM1Q9NQ30 184 aa12.9□□□□□ -0.34
PTP4A3-202ENST00000349124 CCL24O00175 119 aa12.9□□□□□ -0.35
PTP4A3-202ENST00000349124 SMIM1B2RUZ4 78 aa12.89□□□□□ -0.35
PTP4A3-202ENST00000349124 IGLV5-39A0A0G2JS06 123 aa12.89□□□□□ -0.35
PTP4A3-202ENST00000349124 COX6CP09669 75 aa12.89□□□□□ -0.35
PTP4A3-202ENST00000349124 WFDC11Q8NEX6 87 aa12.89□□□□□ -0.35
PTP4A3-202ENST00000349124 IL17DQ8TAD2 202 aa12.89□□□□□ -0.35
PTP4A3-202ENST00000349124 RNF183Q96D59 192 aa12.89□□□□□ -0.35
PTP4A3-202ENST00000349124 DNAJC9-AS1A6NH13 148 aa12.88□□□□□ -0.35
PTP4A3-202ENST00000349124 RPL36AP83881 106 aaKnown RBP12.88□□□□□ -0.35
PTP4A3-202ENST00000349124 HIST2H2BCQ6DN03 193 aa12.88□□□□□ -0.35
PTP4A3-202ENST00000349124 RPL36ALQ969Q0 106 aaKnown RBP12.88□□□□□ -0.35
PTP4A3-202ENST00000349124 YAE1D1Q9NRH1 226 aa12.88□□□□□ -0.35
PTP4A3-202ENST00000349124 K7EQD1 137 aa12.88□□□□□ -0.35
PTP4A3-202ENST00000349124 GIG44P09565 113 aaPredicted RBP12.88□□□□□ -0.35
PTP4A3-202ENST00000349124 HERVK_113P63121 156 aa12.87□□□□□ -0.35
PTP4A3-202ENST00000349124 ZNF843Q8N446 348 aa12.87□□□□□ -0.35
PTP4A3-202ENST00000349124 UBE2WQ96B02 151 aa12.87□□□□□ -0.35
PTP4A3-202ENST00000349124 TIMM17BO60830 172 aa12.87□□□□□ -0.35
PTP4A3-202ENST00000349124 LST1O00453 97 aa12.86□□□□□ -0.35
PTP4A3-202ENST00000349124 CITED1Q99966 193 aa12.86□□□□□ -0.35
PTP4A3-202ENST00000349124 CDC42SE2Q9NRR3 84 aa12.86□□□□□ -0.35
PTP4A3-202ENST00000349124 NBEAL2Q6ZNJ1 2754 aa12.86□□□□□ -0.35
PTP4A3-202ENST00000349124 GAGE7O76087 117 aa12.86□□□□□ -0.35
PTP4A3-202ENST00000349124 GAGE12FP0CL80 117 aa12.86□□□□□ -0.35
PTP4A3-202ENST00000349124 GAGE12GP0CL81 117 aa12.86□□□□□ -0.35
PTP4A3-202ENST00000349124 GAGE12IP0CL82 117 aa12.86□□□□□ -0.35
PTP4A3-202ENST00000349124 IFITM1P13164 125 aa12.86□□□□□ -0.35
PTP4A3-202ENST00000349124 RPL35AP18077 110 aaKnown RBP12.86□□□□□ -0.35
PTP4A3-202ENST00000349124 CIRBPQ14011 172 aaKnown RBP12.86□□□□□ -0.35
PTP4A3-202ENST00000349124 IGKV3OR2-268A0A0C4DH90 116 aa12.85□□□□□ -0.35
PTP4A3-202ENST00000349124 PRIMA1Q86XR5 153 aa12.85□□□□□ -0.35
PTP4A3-202ENST00000349124 TRAV8-4A0A0B4J246 113 aa12.85□□□□□ -0.35
PTP4A3-202ENST00000349124 MEIG1Q5JSS6 88 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms