RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 K7EQG2 157 aa4.9□□□□□ -1.63
VPS39-202ENST00000348544 RS1O15537 224 aa4.9□□□□□ -1.63
VPS39-202ENST00000348544 HTN1P15515 57 aa4.9□□□□□ -1.63
VPS39-202ENST00000348544 ADORA2A-AS1P86434 159 aa4.9□□□□□ -1.63
VPS39-202ENST00000348544 CIRBPQ14011 172 aaKnown RBP4.9□□□□□ -1.63
VPS39-202ENST00000348544 IGHV3OR16-12A0A075B7B8 117 aa4.9□□□□□ -1.63
VPS39-202ENST00000348544 KIR2DL5BQ8NHK3 375 aa4.9□□□□□ -1.63
VPS39-202ENST00000348544 VPS13CQ709C8 3753 aa4.89□□□□□ -1.63
VPS39-202ENST00000348544 ATOX1O00244 68 aa4.89□□□□□ -1.63
VPS39-202ENST00000348544 OXTP01178 125 aa4.89□□□□□ -1.63
VPS39-202ENST00000348544 HOXD3P31249 432 aaPredicted RBP4.89□□□□□ -1.63
VPS39-202ENST00000348544 CFHR3Q02985 330 aa4.89□□□□□ -1.63
VPS39-202ENST00000348544 LINC00242Q5T6M2 205 aa4.89□□□□□ -1.63
VPS39-202ENST00000348544 TRAV13-1A0A0B4J241 112 aa4.89□□□□□ -1.63
VPS39-202ENST00000348544 SMIM1B2RUZ4 78 aa4.89□□□□□ -1.63
VPS39-202ENST00000348544 MALP21145 153 aa4.89□□□□□ -1.63
VPS39-202ENST00000348544 SNRPD3P62318 126 aaKnown RBP4.89□□□□□ -1.63
VPS39-202ENST00000348544 RPS28P62857 69 aaKnown RBP4.89□□□□□ -1.63
VPS39-202ENST00000348544 PIK3CD-AS1Q5SR53 167 aa4.89□□□□□ -1.63
VPS39-202ENST00000348544 UPK3BQ9BT76 320 aa4.89□□□□□ -1.63
VPS39-202ENST00000348544 RIF1Q5UIP0 2472 aaKnown RBP4.88□□□□□ -1.63
VPS39-202ENST00000348544 A6NDX4 124 aa4.88□□□□□ -1.63
VPS39-202ENST00000348544 H3BUX3 64 aa4.88□□□□□ -1.63
VPS39-202ENST00000348544 INAFM2P0DMQ5 153 aa4.88□□□□□ -1.63
VPS39-202ENST00000348544 IGHV4-38-2P0DP08 117 aa4.88□□□□□ -1.63
VPS39-202ENST00000348544 RPL18AQ02543 176 aaKnown RBP4.88□□□□□ -1.63
VPS39-202ENST00000348544 C10orf99Q6UWK7 81 aa4.88□□□□□ -1.63
VPS39-202ENST00000348544 RNF152Q8N8N0 203 aa4.88□□□□□ -1.63
VPS39-202ENST00000348544 CEP295Q9C0D2 2601 aa4.88□□□□□ -1.63
VPS39-202ENST00000348544 A0A087WVE0 104 aa4.88□□□□□ -1.63
VPS39-202ENST00000348544 IGKV3D-7A0A0C4DH55 119 aa4.88□□□□□ -1.63
VPS39-202ENST00000348544 LCE2BO14633 110 aa4.88□□□□□ -1.63
VPS39-202ENST00000348544 PRIMA1Q86XR5 153 aa4.88□□□□□ -1.63
VPS39-202ENST00000348544 LINC00528Q8N1L1 170 aa4.88□□□□□ -1.63
VPS39-202ENST00000348544 COL12A1Q99715 3063 aa4.88□□□□□ -1.63
VPS39-202ENST00000348544 DPH3Q96FX2 82 aa4.87□□□□□ -1.63
VPS39-202ENST00000348544 PIMREGQ9BSJ6 248 aa4.87□□□□□ -1.63
VPS39-202ENST00000348544 PRORYQ9H606 182 aa4.87□□□□□ -1.63
VPS39-202ENST00000348544 A0A087WYN8 130 aa4.87□□□□□ -1.63
VPS39-202ENST00000348544 SYNJ2BPP57105 145 aa4.87□□□□□ -1.63
VPS39-202ENST00000348544 LINC00337Q8N6G1 96 aa4.87□□□□□ -1.63
VPS39-202ENST00000348544 C14orf132Q9NPU4 83 aa4.87□□□□□ -1.63
VPS39-202ENST00000348544 LINC00846Q9NV44 126 aa4.87□□□□□ -1.63
VPS39-202ENST00000348544 PTPRQQ9UMZ3 2332 aa4.86□□□□□ -1.63
VPS39-202ENST00000348544 RBMY1BA6NDE4 496 aaKnown RBP4.86□□□□□ -1.63
VPS39-202ENST00000348544 RBMY1EA6NEQ0 496 aaKnown RBP4.86□□□□□ -1.63
VPS39-202ENST00000348544 F5H768 121 aa4.86□□□□□ -1.63
VPS39-202ENST00000348544 RBMY1DP0C7P1 496 aaKnown RBP4.86□□□□□ -1.63
VPS39-202ENST00000348544 RPL28P46779 137 aaKnown RBP4.86□□□□□ -1.63
VPS39-202ENST00000348544 KLRB1Q12918 225 aa4.86□□□□□ -1.63
VPS39-202ENST00000348544 HIST2H2BCQ6DN03 193 aa4.86□□□□□ -1.63
VPS39-202ENST00000348544 HIST2H2BDQ6DRA6 164 aa4.86□□□□□ -1.63
VPS39-202ENST00000348544 LINC01561Q8N1V8 128 aa4.86□□□□□ -1.63
VPS39-202ENST00000348544 DSCR8Q96T75 97 aa4.86□□□□□ -1.63
VPS39-202ENST00000348544 ZFHX2Q9C0A1 2572 aaPredicted RBP4.86□□□□□ -1.63
VPS39-202ENST00000348544 IGKV2-28A0A075B6P5 120 aa4.86□□□□□ -1.63
VPS39-202ENST00000348544 IGKV2D-28P01615 120 aa4.86□□□□□ -1.63
VPS39-202ENST00000348544 IGHV3-53P01767 116 aa4.86□□□□□ -1.63
VPS39-202ENST00000348544 Q6JHZ5 121 aa4.86□□□□□ -1.63
VPS39-202ENST00000348544 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.86□□□□□ -1.631e-6■■■□□ 19.2
VPS39-202ENST00000348544 DNAL4O96015 105 aa4.85□□□□□ -1.63
VPS39-202ENST00000348544 PSMB8P28062 276 aa4.85□□□□□ -1.63
VPS39-202ENST00000348544 TMEM258P61165 79 aa4.85□□□□□ -1.63
VPS39-202ENST00000348544 DGAT2L7PQ6IED9 249 aa4.85□□□□□ -1.63
VPS39-202ENST00000348544 FAM19A3Q7Z5A8 133 aa4.85□□□□□ -1.63
VPS39-202ENST00000348544 SERP2Q8N6R1 65 aa4.85□□□□□ -1.63
VPS39-202ENST00000348544 COPS9Q8WXC6 57 aa4.85□□□□□ -1.63
VPS39-202ENST00000348544 Q96MF0 132 aa4.85□□□□□ -1.63
VPS39-202ENST00000348544 OBSCN-AS1Q96MR7 158 aa4.85□□□□□ -1.63
VPS39-202ENST00000348544 ATRXP46100 2492 aa4.85□□□□□ -1.63
VPS39-202ENST00000348544 ZNF415Q09FC8 603 aa4.85□□□□□ -1.63
VPS39-202ENST00000348544 OR13C6PQ8NH95 151 aa4.85□□□□□ -1.63
VPS39-202ENST00000348544 WIPF1O43516 503 aa4.84□□□□□ -1.63
VPS39-202ENST00000348544 C11orf72Q8NBR9 251 aa4.84□□□□□ -1.63
VPS39-202ENST00000348544 USP17L23D6RBM5 183 aa4.84□□□□□ -1.63
VPS39-202ENST00000348544 CRPP02741 224 aa4.84□□□□□ -1.63
VPS39-202ENST00000348544 SMIM11BQ8TCY0 68 aa4.84□□□□□ -1.63
VPS39-202ENST00000348544 CRYBG3Q68DQ2 2970 aa4.84□□□□□ -1.64
VPS39-202ENST00000348544 CREBBPQ92793 2442 aa4.83□□□□□ -1.64
VPS39-202ENST00000348544 TRAV13-2A0A0B4J235 113 aa4.83□□□□□ -1.64
VPS39-202ENST00000348544 C4orf26Q17RF5 130 aa4.83□□□□□ -1.64
VPS39-202ENST00000348544 Q5XG85 94 aa4.83□□□□□ -1.64
VPS39-202ENST00000348544 IGHV4-61A0A0C4DH41 118 aa4.83□□□□□ -1.64
VPS39-202ENST00000348544 A8MTW9 85 aa4.83□□□□□ -1.64
VPS39-202ENST00000348544 K7ENP7 123 aa4.83□□□□□ -1.64
VPS39-202ENST00000348544 NCR3O14931 201 aa4.83□□□□□ -1.64
VPS39-202ENST00000348544 DEFB131AP59861 70 aa4.83□□□□□ -1.64
VPS39-202ENST00000348544 NTM-AS1Q6ZSK4 140 aa4.83□□□□□ -1.64
VPS39-202ENST00000348544 MIR7-3HGQ8N6C7 128 aa4.83□□□□□ -1.64
VPS39-202ENST00000348544 PF4P02776 101 aa4.82□□□□□ -1.64
VPS39-202ENST00000348544 SS18Q15532 418 aa4.82□□□□□ -1.64
VPS39-202ENST00000348544 TRAV25A0A0B4J276 109 aa4.82□□□□□ -1.64
VPS39-202ENST00000348544 HILS1P60008 231 aa4.82□□□□□ -1.64
VPS39-202ENST00000348544 SND1-IT1Q9HBX3 110 aa4.82□□□□□ -1.64
VPS39-202ENST00000348544 MAP1AP78559 2803 aaPredicted RBP4.82□□□□□ -1.64
VPS39-202ENST00000348544 TMEM89A2RUT3 159 aa4.81□□□□□ -1.64
VPS39-202ENST00000348544 LECT2O14960 151 aa4.81□□□□□ -1.64
VPS39-202ENST00000348544 SLPIP03973 132 aa4.81□□□□□ -1.64
VPS39-202ENST00000348544 FHL2Q14192 279 aa4.81□□□□□ -1.64
VPS39-202ENST00000348544 CDC42SE2Q9NRR3 84 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 159 ms