RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 I3L2K1 104 aa13.43□□□□□ -0.26
SMAD4-201ENST00000342988 LY6LH3BQJ8 138 aa13.42□□□□□ -0.26
SMAD4-201ENST00000342988 EBI3Q14213 229 aa13.42□□□□□ -0.26
SMAD4-201ENST00000342988 IGHV7-81A0A0B4J1V7 117 aa13.42□□□□□ -0.26
SMAD4-201ENST00000342988 TRBV6-5A0A0K0K1A5 114 aa13.42□□□□□ -0.26
SMAD4-201ENST00000342988 TDRG1Q3Y452 100 aa13.42□□□□□ -0.26
SMAD4-201ENST00000342988 PLA2G1BP04054 148 aaKnown RBP13.42□□□□□ -0.26
SMAD4-201ENST00000342988 K7EIM0 57 aa13.41□□□□□ -0.26
SMAD4-201ENST00000342988 IGLV9-49A0A0B4J1Y8 123 aa13.4□□□□□ -0.26
SMAD4-201ENST00000342988 M0R378 163 aa13.4□□□□□ -0.26
SMAD4-201ENST00000342988 TRIAP1O43715 76 aa13.4□□□□□ -0.26
SMAD4-201ENST00000342988 DEFB4AO15263 64 aa13.4□□□□□ -0.26
SMAD4-201ENST00000342988 LINC00308Q8TCZ7 52 aa13.4□□□□□ -0.27
SMAD4-201ENST00000342988 SPAG11AQ6PDA7 123 aa13.39□□□□□ -0.27
SMAD4-201ENST00000342988 LINC00173Q6ZV60 143 aa13.39□□□□□ -0.27
SMAD4-201ENST00000342988 DEFB131BA0A096LNP1 70 aa13.39□□□□□ -0.27
SMAD4-201ENST00000342988 SLPIP03973 132 aa13.38□□□□□ -0.27
SMAD4-201ENST00000342988 BDP1A6H8Y1 2624 aa13.38□□□□□ -0.27
SMAD4-201ENST00000342988 LOC107984640A0A0U1RRK4 108 aa13.38□□□□□ -0.27
SMAD4-201ENST00000342988 Q6ZR03 302 aa13.37□□□□□ -0.27
SMAD4-201ENST00000342988 A6NDX4 124 aa13.37□□□□□ -0.27
SMAD4-201ENST00000342988 LINC00694P0DN24 101 aa13.37□□□□□ -0.27
SMAD4-201ENST00000342988 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.37□□□□□ -0.27
SMAD4-201ENST00000342988 XAGE1AQ9HD64 81 aa13.37□□□□□ -0.27
SMAD4-201ENST00000342988 CTSZQ9UBR2 303 aa13.37□□□□□ -0.27
SMAD4-201ENST00000342988 IGKV2-28A0A075B6P5 120 aa13.37□□□□□ -0.27
SMAD4-201ENST00000342988 IGKV2D-28P01615 120 aa13.37□□□□□ -0.27
SMAD4-201ENST00000342988 Q6ZQY7 126 aa13.37□□□□□ -0.27
SMAD4-201ENST00000342988 LY6G6EA0A0G2JKS1 128 aa13.36□□□□□ -0.27
SMAD4-201ENST00000342988 SYCNQ0VAF6 134 aa13.36□□□□□ -0.27
SMAD4-201ENST00000342988 LIMD2Q9BT23 127 aa13.36□□□□□ -0.27
SMAD4-201ENST00000342988 RNF144BQ7Z419 303 aa13.36□□□□□ -0.27
SMAD4-201ENST00000342988 MSRB1Q9NZV6 116 aa13.36□□□□□ -0.27
SMAD4-201ENST00000342988 CELA1Q9UNI1 258 aa13.36□□□□□ -0.27
SMAD4-201ENST00000342988 LINC00467Q9BRT7 94 aa13.35□□□□□ -0.27
SMAD4-201ENST00000342988 C19orf71A6NCJ1 209 aa13.34□□□□□ -0.27
SMAD4-201ENST00000342988 C6orf99Q4VX62 202 aa13.34□□□□□ -0.27
SMAD4-201ENST00000342988 A0A0J9YX75 114 aa13.34□□□□□ -0.27
SMAD4-201ENST00000342988 RPL28P46779 137 aaKnown RBP13.34□□□□□ -0.27
SMAD4-201ENST00000342988 C22orf34Q6ZV56 151 aa13.34□□□□□ -0.27
SMAD4-201ENST00000342988 CXCL6P80162 114 aa13.34□□□□□ -0.27
SMAD4-201ENST00000342988 TMEM254Q8TBM7 123 aa13.34□□□□□ -0.27
SMAD4-201ENST00000342988 TLN2Q9Y4G6 2542 aa13.34□□□□□ -0.27
SMAD4-201ENST00000342988 PYGO1Q9Y3Y4 419 aa13.33□□□□□ -0.28
SMAD4-201ENST00000342988 FN1P02751 2386 aaKnown RBP13.33□□□□□ -0.28
SMAD4-201ENST00000342988 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.32□□□□□ -0.28
SMAD4-201ENST00000342988 C17orf82Q86X59 251 aaPredicted RBP13.32□□□□□ -0.28
SMAD4-201ENST00000342988 IGLV4-69A0A075B6H9 119 aa13.32□□□□□ -0.28
SMAD4-201ENST00000342988 PSPHP1O15172 72 aa13.32□□□□□ -0.28
SMAD4-201ENST00000342988 MAP6D1Q9H9H5 199 aa13.32□□□□□ -0.28
SMAD4-201ENST00000342988 TRBV6-8A0A0A6YYG3 113 aa13.31□□□□□ -0.28
SMAD4-201ENST00000342988 Q6JHZ5 121 aa13.31□□□□□ -0.28
SMAD4-201ENST00000342988 PLAC8L1A1L4L8 177 aa13.31□□□□□ -0.28
SMAD4-201ENST00000342988 NEXN-AS1Q8NBZ9 246 aa13.3□□□□□ -0.28
SMAD4-201ENST00000342988 Q6Q795 121 aa13.3□□□□□ -0.28
SMAD4-201ENST00000342988 DCANP1Q8TF63 244 aa13.3□□□□□ -0.28
SMAD4-201ENST00000342988 CIRBP-AS1Q8TBR5 109 aa13.3□□□□□ -0.28
SMAD4-201ENST00000342988 LINC00208Q96KT6 92 aa13.3□□□□□ -0.28
SMAD4-201ENST00000342988 PCSK5Q92824 1860 aa13.3□□□□□ -0.28
SMAD4-201ENST00000342988 ZNF843Q8N446 348 aa13.29□□□□□ -0.28
SMAD4-201ENST00000342988 FAM167A-AS1Q96KT0 104 aa13.29□□□□□ -0.28
SMAD4-201ENST00000342988 NOTCH2Q04721 2471 aa13.29□□□□□ -0.28
SMAD4-201ENST00000342988 CD164L2Q6UWJ8 174 aa13.28□□□□□ -0.28
SMAD4-201ENST00000342988 LST1O00453 97 aa13.28□□□□□ -0.28
SMAD4-201ENST00000342988 WDR87Q6ZQQ6 2873 aa13.27□□□□□ -0.28
SMAD4-201ENST00000342988 CCDC179H3BU77 68 aa13.27□□□□□ -0.29
SMAD4-201ENST00000342988 PPDPFQ9H3Y8 114 aa13.27□□□□□ -0.29
SMAD4-201ENST00000342988 LOC100131303A0A0U1RQF7 123 aa13.27□□□□□ -0.29
SMAD4-201ENST00000342988 M0QXV9 152 aa13.27□□□□□ -0.29
SMAD4-201ENST00000342988 TRAV10A0A0B4J240 114 aa13.26□□□□□ -0.29
SMAD4-201ENST00000342988 SPINT4Q6UDR6 99 aa13.26□□□□□ -0.29
SMAD4-201ENST00000342988 hDV103S1A0JD37 113 aa13.26□□□□□ -0.29
SMAD4-201ENST00000342988 CDKN2A-AS1Q9UH64 79 aa13.25□□□□□ -0.29
SMAD4-201ENST00000342988 H0Y9P7 68 aa13.25□□□□□ -0.29
SMAD4-201ENST00000342988 ZNF73O43830 326 aaPredicted RBP13.25□□□□□ -0.29
SMAD4-201ENST00000342988 VWCEQ96DN2 955 aa13.25□□□□□ -0.29
SMAD4-201ENST00000342988 FSHBP01225 129 aa13.25□□□□□ -0.29
SMAD4-201ENST00000342988 CEMP1Q6PRD7 247 aaPredicted RBP13.25□□□□□ -0.29
SMAD4-201ENST00000342988 TRBV7-7A0A0K0K1E9 115 aa13.24□□□□□ -0.29
SMAD4-201ENST00000342988 MRPS12O15235 138 aaKnown RBP13.24□□□□□ -0.29
SMAD4-201ENST00000342988 CRYGAP11844 174 aa13.24□□□□□ -0.29
SMAD4-201ENST00000342988 SOSTDC1Q6X4U4 206 aa13.24□□□□□ -0.29
SMAD4-201ENST00000342988 TTTY13Q9BZ97 58 aa13.24□□□□□ -0.29
SMAD4-201ENST00000342988 LINC01547P58512 204 aaPredicted RBP13.24□□□□□ -0.29
SMAD4-201ENST00000342988 IGLV4-3A0A075B6K6 122 aa13.23□□□□□ -0.29
SMAD4-201ENST00000342988 TRBV6-4A0A1B0GX49 114 aa13.22□□□□□ -0.29
SMAD4-201ENST00000342988 SMIM11BQ8TCY0 68 aa13.22□□□□□ -0.29
SMAD4-201ENST00000342988 TP73-AS1Q9UF72 201 aa13.22□□□□□ -0.29
SMAD4-201ENST00000342988 IGHV6-1A0A0B4J1U7 121 aa13.21□□□□□ -0.29
SMAD4-201ENST00000342988 NUPR1O60356 82 aa13.21□□□□□ -0.29
SMAD4-201ENST00000342988 PIEZO1Q92508 2521 aa13.21□□□□□ -0.29
SMAD4-201ENST00000342988 TRBV10-3A0A0K0K1G6 114 aa13.21□□□□□ -0.29
SMAD4-201ENST00000342988 REG3GQ6UW15 175 aa13.21□□□□□ -0.29
SMAD4-201ENST00000342988 A8MZ25 164 aa13.2□□□□□ -0.3
SMAD4-201ENST00000342988 PRAC2D3DTV9 90 aa13.2□□□□□ -0.3
SMAD4-201ENST00000342988 A0A1B0GU69 56 aa13.2□□□□□ -0.3
SMAD4-201ENST00000342988 SPINK1P00995 79 aa13.2□□□□□ -0.3
SMAD4-201ENST00000342988 Q6ZTI0 123 aa13.19□□□□□ -0.3
SMAD4-201ENST00000342988 C7orf65Q6ZTY9 151 aa13.19□□□□□ -0.3
SMAD4-201ENST00000342988 C1orf147Q96MC9 270 aaPredicted RBP13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms