RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 H0Y8G0 127 aa10.29□□□□□ -0.76
CCDC88C-202ENST00000334448 UBE2L6O14933 153 aa10.29□□□□□ -0.76
CCDC88C-202ENST00000334448 DPM2O94777 84 aa10.29□□□□□ -0.76
CCDC88C-202ENST00000334448 Q6ZUT4 128 aa10.29□□□□□ -0.76
CCDC88C-202ENST00000334448 VCX2Q9H322 139 aa10.29□□□□□ -0.76
CCDC88C-202ENST00000334448 MRPL35Q9NZE8 188 aaKnown RBP10.29□□□□□ -0.76
CCDC88C-202ENST00000334448 TRAV9-2A0A087WT02 112 aa10.28□□□□□ -0.76
CCDC88C-202ENST00000334448 S100A12P80511 92 aa10.28□□□□□ -0.76
CCDC88C-202ENST00000334448 LYPD5Q6UWN5 251 aa10.28□□□□□ -0.76
CCDC88C-202ENST00000334448 OR5A1Q8NGJ0 315 aa10.28□□□□□ -0.76
CCDC88C-202ENST00000334448 CHCHD5Q9BSY4 110 aa10.28□□□□□ -0.76
CCDC88C-202ENST00000334448 CDC42SE2Q9NRR3 84 aa10.28□□□□□ -0.76
CCDC88C-202ENST00000334448 CHTOPQ9Y3Y2 248 aaKnown RBP10.28□□□□□ -0.76
CCDC88C-202ENST00000334448 IGLV4-69A0A075B6H9 119 aa10.27□□□□□ -0.77
CCDC88C-202ENST00000334448 DGAT2L7PQ6IED9 249 aa10.27□□□□□ -0.77
CCDC88C-202ENST00000334448 CEMP1Q6PRD7 247 aaPredicted RBP10.27□□□□□ -0.77
CCDC88C-202ENST00000334448 FAM19A3Q7Z5A8 133 aa10.27□□□□□ -0.77
CCDC88C-202ENST00000334448 NFE4Q86UQ8 179 aa10.27□□□□□ -0.77
CCDC88C-202ENST00000334448 OPRPNQ99935 248 aaPredicted RBP10.27□□□□□ -0.77
CCDC88C-202ENST00000334448 PMCHL2Q9BQD1 86 aa10.27□□□□□ -0.77
CCDC88C-202ENST00000334448 IGKCP01834 107 aa10.26□□□□□ -0.77
CCDC88C-202ENST00000334448 AMMECR1LQ6DCA0 310 aa10.26□□□□□ -0.77
CCDC88C-202ENST00000334448 TMEM101Q96IK0 257 aa10.26□□□□□ -0.77
CCDC88C-202ENST00000334448 VAMP8Q9BV40 100 aa10.26□□□□□ -0.77
CCDC88C-202ENST00000334448 DNAH7Q8WXX0 4024 aa10.25□□□□□ -0.77
CCDC88C-202ENST00000334448 IGLC3P0DOY3 106 aa10.25□□□□□ -0.77
CCDC88C-202ENST00000334448 GAGE6Q13070 117 aa10.25□□□□□ -0.77
CCDC88C-202ENST00000334448 ZNF664Q8N3J9 261 aa10.25□□□□□ -0.77
CCDC88C-202ENST00000334448 C2orf88Q9BSF0 95 aa10.25□□□□□ -0.77
CCDC88C-202ENST00000334448 ATOH7Q8N100 152 aa10.24□□□□□ -0.77
CCDC88C-202ENST00000334448 UBE2D1P51668 147 aa10.23□□□□□ -0.77
CCDC88C-202ENST00000334448 RBX1P62877 108 aa10.23□□□□□ -0.77
CCDC88C-202ENST00000334448 ZC2HC1BQ5TFG8 222 aa10.23□□□□□ -0.77
CCDC88C-202ENST00000334448 IGLV4-60A0A075B6I1 120 aa10.22□□□□□ -0.77
CCDC88C-202ENST00000334448 TRAV8-6A0A0B4J262 113 aa10.22□□□□□ -0.77
CCDC88C-202ENST00000334448 C11orf86A6NJI1 115 aa10.22□□□□□ -0.77
CCDC88C-202ENST00000334448 HSBP1L1C9JCN9 74 aa10.22□□□□□ -0.77
CCDC88C-202ENST00000334448 MPV17L2Q567V2 206 aa10.22□□□□□ -0.77
CCDC88C-202ENST00000334448 IGLV5-45A0A087WSX0 123 aa10.21□□□□□ -0.77
CCDC88C-202ENST00000334448 TINCRA0A1B0GVN0 87 aa10.21□□□□□ -0.77
CCDC88C-202ENST00000334448 SEC11AP67812 179 aa10.21□□□□□ -0.77
CCDC88C-202ENST00000334448 ESRGQ1W209 222 aa10.21□□□□□ -0.77
CCDC88C-202ENST00000334448 PAM16Q9Y3D7 125 aa10.21□□□□□ -0.77
CCDC88C-202ENST00000334448 hDV102S1A0JD36 115 aa10.2□□□□□ -0.78
CCDC88C-202ENST00000334448 TCTAP57738 103 aa10.2□□□□□ -0.78
CCDC88C-202ENST00000334448 MAJINQ3KP22 176 aa10.2□□□□□ -0.78
CCDC88C-202ENST00000334448 SPATA45Q537H7 98 aa10.2□□□□□ -0.78
CCDC88C-202ENST00000334448 RNASE13Q5GAN3 156 aaKnown RBP10.2□□□□□ -0.78
CCDC88C-202ENST00000334448 CHAC1Q9BUX1 264 aa10.2□□□□□ -0.78
CCDC88C-202ENST00000334448 A0A0J9YXV3 536 aa10.19□□□□□ -0.78
CCDC88C-202ENST00000334448 NUPR2A6NF83 97 aa10.19□□□□□ -0.78
CCDC88C-202ENST00000334448 TMEM262E9PQX1 116 aa10.19□□□□□ -0.78
CCDC88C-202ENST00000334448 CCL25O15444 150 aa10.19□□□□□ -0.78
CCDC88C-202ENST00000334448 MRPS16Q9Y3D3 137 aaKnown RBP10.19□□□□□ -0.78
CCDC88C-202ENST00000334448 IGLL5B9A064 214 aa10.18□□□□□ -0.78
CCDC88C-202ENST00000334448 ZNF22P17026 224 aaPredicted RBP10.18□□□□□ -0.78
CCDC88C-202ENST00000334448 ANKRD39Q53RE8 183 aa10.18□□□□□ -0.78
CCDC88C-202ENST00000334448 LINC00242Q5T6M2 205 aa10.18□□□□□ -0.78
CCDC88C-202ENST00000334448 UPK3BQ9BT76 320 aa10.18□□□□□ -0.78
CCDC88C-202ENST00000334448 HERVK_113P63121 156 aa10.17□□□□□ -0.78
CCDC88C-202ENST00000334448 LINC01556Q5JQF7 62 aa10.17□□□□□ -0.78
CCDC88C-202ENST00000334448 STPG4Q8N801 248 aa10.17□□□□□ -0.78
CCDC88C-202ENST00000334448 PRR34Q9NV39 138 aa10.17□□□□□ -0.78
CCDC88C-202ENST00000334448 TSTD3H0UI37 97 aa10.16□□□□□ -0.78
CCDC88C-202ENST00000334448 WFDC10BQ8IUB3 73 aa10.16□□□□□ -0.78
CCDC88C-202ENST00000334448 APLNQ9ULZ1 77 aa10.16□□□□□ -0.78
CCDC88C-202ENST00000334448 PLECQ15149 4684 aaKnown RBP10.16□□□□□ -0.78
CCDC88C-202ENST00000334448 E9PLD3 99 aa10.15□□□□□ -0.78
CCDC88C-202ENST00000334448 DNAH10OSP0CZ25 163 aa10.15□□□□□ -0.78
CCDC88C-202ENST00000334448 CCL18P55774 89 aa10.15□□□□□ -0.78
CCDC88C-202ENST00000334448 HERVK_113P61574 105 aa10.15□□□□□ -0.78
CCDC88C-202ENST00000334448 KLK5Q9Y337 293 aaPredicted RBP10.15□□□□□ -0.78
CCDC88C-202ENST00000334448 LINC00588Q9Y4M8 146 aa10.15□□□□□ -0.78
CCDC88C-202ENST00000334448 TRAV13-1A0A0B4J241 112 aa10.14□□□□□ -0.79
CCDC88C-202ENST00000334448 LINC00959A0A1B0GUT2 108 aa10.14□□□□□ -0.79
CCDC88C-202ENST00000334448 TMEM223A0PJW6 202 aa10.14□□□□□ -0.79
CCDC88C-202ENST00000334448 DLEU1O43261 78 aa10.14□□□□□ -0.79
CCDC88C-202ENST00000334448 GEMIN7Q9H840 131 aaKnown RBP10.14□□□□□ -0.79
CCDC88C-202ENST00000334448 COX8AP10176 69 aa10.13□□□□□ -0.79
CCDC88C-202ENST00000334448 TMEM170BQ5T4T1 132 aa10.13□□□□□ -0.79
CCDC88C-202ENST00000334448 Q8N3U1 123 aa10.13□□□□□ -0.79
CCDC88C-202ENST00000334448 IGKV2D-26A0A0A0MRZ7 120 aa10.12□□□□□ -0.79
CCDC88C-202ENST00000334448 H3BRM9 83 aa10.12□□□□□ -0.79
CCDC88C-202ENST00000334448 ANGP03950 147 aaKnown RBP10.12□□□□□ -0.79
CCDC88C-202ENST00000334448 REG3AQ06141 175 aa10.12□□□□□ -0.79
CCDC88C-202ENST00000334448 LINC01561Q8N1V8 128 aa10.12□□□□□ -0.79
CCDC88C-202ENST00000334448 LINC00269Q8N2A0 174 aa10.12□□□□□ -0.79
CCDC88C-202ENST00000334448 LINC00469Q8N7U9 141 aa10.12□□□□□ -0.79
CCDC88C-202ENST00000334448 MIEN1Q9BRT3 115 aa10.12□□□□□ -0.79
CCDC88C-202ENST00000334448 PRO1933Q9H354 126 aa10.12□□□□□ -0.79
CCDC88C-202ENST00000334448 UQCR10Q9UDW1 63 aa10.12□□□□□ -0.79
CCDC88C-202ENST00000334448 STARD9Q9P2P6 4700 aa10.11□□□□□ -0.79
CCDC88C-202ENST00000334448 IGHV3OR16-9A0A0B4J2B5 98 aa10.11□□□□□ -0.79
CCDC88C-202ENST00000334448 IGLV5-39A0A0G2JS06 123 aa10.11□□□□□ -0.79
CCDC88C-202ENST00000334448 K7EP13 123 aa10.11□□□□□ -0.79
CCDC88C-202ENST00000334448 COX6A2Q02221 97 aa10.11□□□□□ -0.79
CCDC88C-202ENST00000334448 BOD1L2Q8IYS8 172 aa10.11□□□□□ -0.79
CCDC88C-202ENST00000334448 CDKN2A-AS1Q9UH64 79 aa10.11□□□□□ -0.79
CCDC88C-202ENST00000334448 CSMD3Q7Z407 3707 aa10.1□□□□□ -0.79
CCDC88C-202ENST00000334448 SS18Q15532 418 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 511 ms