RNA–Protein interactions for RNA: ENST00000303406.4

HOXC4-201, Transcript of homeobox C4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC4, Length 1,524 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4-201ENST00000303406 UBE2D1P51668 147 aa13.74□□□□□ -0.21
HOXC4-201ENST00000303406 PTTG1IPP53801 180 aa13.74□□□□□ -0.21
HOXC4-201ENST00000303406 TSPEAR-AS2P59090 65 aa13.74□□□□□ -0.21
HOXC4-201ENST00000303406 SCGB1D4Q6XE38 83 aa13.74□□□□□ -0.21
HOXC4-201ENST00000303406 VAMP3Q15836 100 aa13.74□□□□□ -0.21
HOXC4-201ENST00000303406 OR5A1Q8NGJ0 315 aa13.74□□□□□ -0.21
HOXC4-201ENST00000303406 IGLV5-45A0A087WSX0 123 aa13.73□□□□□ -0.21
HOXC4-201ENST00000303406 A0A0J9YY99 117 aa13.73□□□□□ -0.21
HOXC4-201ENST00000303406 TMEM243Q9BU79 118 aa13.73□□□□□ -0.21
HOXC4-201ENST00000303406 JMJD1CQ15652 2540 aa13.72□□□□□ -0.21
HOXC4-201ENST00000303406 A0A1B0GWB2 263 aa13.71□□□□□ -0.21
HOXC4-201ENST00000303406 IGHV1-58A0A0C4DH39 117 aa13.7□□□□□ -0.22
HOXC4-201ENST00000303406 RNASE13Q5GAN3 156 aaKnown RBP13.69□□□□□ -0.22
HOXC4-201ENST00000303406 GEMIN7Q9H840 131 aaKnown RBP13.69□□□□□ -0.22
HOXC4-201ENST00000303406 LOC100131303A0A0U1RQF7 123 aa13.69□□□□□ -0.22
HOXC4-201ENST00000303406 TMEM238LA0A1B0GVL6 79 aa13.69□□□□□ -0.22
HOXC4-201ENST00000303406 A6NJY4 79 aa13.69□□□□□ -0.22
HOXC4-201ENST00000303406 UBE2L6O14933 153 aa13.69□□□□□ -0.22
HOXC4-201ENST00000303406 MIFP14174 115 aa13.69□□□□□ -0.22
HOXC4-201ENST00000303406 HERVK_113P63121 156 aa13.69□□□□□ -0.22
HOXC4-201ENST00000303406 KRTAP24-1Q3LI83 254 aa13.69□□□□□ -0.22
HOXC4-201ENST00000303406 CDC42SE2Q9NRR3 84 aa13.69□□□□□ -0.22
HOXC4-201ENST00000303406 NHP2Q9NX24 153 aaKnown RBP13.69□□□□□ -0.22
HOXC4-201ENST00000303406 K7EP13 123 aa13.68□□□□□ -0.22
HOXC4-201ENST00000303406 CCL25O15444 150 aa13.68□□□□□ -0.22
HOXC4-201ENST00000303406 IGHV3-30-3P0DP02 117 aa13.68□□□□□ -0.22
HOXC4-201ENST00000303406 DEFB130BP0DP73 79 aa13.68□□□□□ -0.22
HOXC4-201ENST00000303406 DEFB130AP0DP74 79 aa13.68□□□□□ -0.22
HOXC4-201ENST00000303406 TMEM101Q96IK0 257 aa13.68□□□□□ -0.22
HOXC4-201ENST00000303406 DEFB135Q30KP9 77 aa13.67□□□□□ -0.22
HOXC4-201ENST00000303406 C12orf74Q32Q52 190 aa13.67□□□□□ -0.22
HOXC4-201ENST00000303406 AMMECR1LQ6DCA0 310 aa13.67□□□□□ -0.22
HOXC4-201ENST00000303406 TRBV6-8A0A0A6YYG3 113 aa13.66□□□□□ -0.22
HOXC4-201ENST00000303406 SRSF9Q13242 221 aaKnown RBP eCLIP13.66□□□□□ -0.22
HOXC4-201ENST00000303406 FAM222AQ5U5X8 452 aa13.66□□□□□ -0.22
HOXC4-201ENST00000303406 VSIG2Q96IQ7 327 aa13.66□□□□□ -0.22
HOXC4-201ENST00000303406 PRO0255Q9UI72 69 aa13.66□□□□□ -0.22
HOXC4-201ENST00000303406 H3BUT2 72 aa13.65□□□□□ -0.22
HOXC4-201ENST00000303406 SHISA2Q6UWI4 295 aa13.65□□□□□ -0.22
HOXC4-201ENST00000303406 RAB37Q96AX2 223 aa13.65□□□□□ -0.22
HOXC4-201ENST00000303406 RNF183Q96D59 192 aa13.65□□□□□ -0.22
HOXC4-201ENST00000303406 NIPBLQ6KC79 2804 aaeCLIP13.65□□□□□ -0.22
HOXC4-201ENST00000303406 A0A1W2PPM0 123 aa13.64□□□□□ -0.23
HOXC4-201ENST00000303406 IGHV4-30-4P0DP06 118 aa13.64□□□□□ -0.23
HOXC4-201ENST00000303406 LINC00242Q5T6M2 205 aa13.64□□□□□ -0.23
HOXC4-201ENST00000303406 IGHV4-28A0A0C4DH34 117 aa13.64□□□□□ -0.23
HOXC4-201ENST00000303406 GTF2H5Q6ZYL4 71 aa13.64□□□□□ -0.23
HOXC4-201ENST00000303406 A8MZ25 164 aa13.63□□□□□ -0.23
HOXC4-201ENST00000303406 TMEM238C9JI98 176 aa13.63□□□□□ -0.23
HOXC4-201ENST00000303406 IGHV3-30P01768 117 aa13.63□□□□□ -0.23
HOXC4-201ENST00000303406 IGHV3-30-5P0DP03 117 aa13.63□□□□□ -0.23
HOXC4-201ENST00000303406 Q8NAQ8 132 aa13.63□□□□□ -0.23
HOXC4-201ENST00000303406 F8P00451 2351 aa13.62□□□□□ -0.23
HOXC4-201ENST00000303406 IGHV3-64A0A075B6Q5 118 aa13.62□□□□□ -0.23
HOXC4-201ENST00000303406 K7ERJ3 54 aa13.62□□□□□ -0.23
HOXC4-201ENST00000303406 SAMD5Q5TGI4 173 aa13.62□□□□□ -0.23
HOXC4-201ENST00000303406 ZFAND6Q6FIF0 208 aa13.62□□□□□ -0.23
HOXC4-201ENST00000303406 CDKN2A-AS1Q9UH64 79 aa13.62□□□□□ -0.23
HOXC4-201ENST00000303406 TRAV8-3A0A0A6YYJ7 113 aa13.61□□□□□ -0.23
HOXC4-201ENST00000303406 IGLV5-39A0A0G2JS06 123 aa13.61□□□□□ -0.23
HOXC4-201ENST00000303406 A0A0J9YXY3 114 aa13.61□□□□□ -0.23
HOXC4-201ENST00000303406 GAGE10A6NGK3 116 aa13.61□□□□□ -0.23
HOXC4-201ENST00000303406 K7EP34 96 aa13.61□□□□□ -0.23
HOXC4-201ENST00000303406 GYPEP15421 78 aa13.61□□□□□ -0.23
HOXC4-201ENST00000303406 EGFEM1PQ0D2K5 195 aa13.61□□□□□ -0.23
HOXC4-201ENST00000303406 C10orf126Q8N4M7 172 aa13.61□□□□□ -0.23
HOXC4-201ENST00000303406 ATP6V0E2Q8NHE4 81 aa13.61□□□□□ -0.23
HOXC4-201ENST00000303406 NOTCH3Q9UM47 2321 aa13.61□□□□□ -0.23
HOXC4-201ENST00000303406 TEP1Q99973 2627 aaKnown RBP13.6□□□□□ -0.23
HOXC4-201ENST00000303406 IGLL5B9A064 214 aa13.6□□□□□ -0.23
HOXC4-201ENST00000303406 SPINK8P0C7L1 97 aa13.6□□□□□ -0.23
HOXC4-201ENST00000303406 FABP2P12104 132 aa13.6□□□□□ -0.23
HOXC4-201ENST00000303406 NDUFA12Q9UI09 145 aa13.6□□□□□ -0.23
HOXC4-201ENST00000303406 C3orf56Q8N813 242 aa13.59□□□□□ -0.23
HOXC4-201ENST00000303406 TEX48A0A1B0GUV7 120 aa13.59□□□□□ -0.23
HOXC4-201ENST00000303406 DAD1P61803 113 aa13.59□□□□□ -0.23
HOXC4-201ENST00000303406 COX6A2Q02221 97 aa13.59□□□□□ -0.23
HOXC4-201ENST00000303406 TIMM17BO60830 172 aa13.58□□□□□ -0.24
HOXC4-201ENST00000303406 SPART-AS1P0CW21 52 aa13.58□□□□□ -0.24
HOXC4-201ENST00000303406 NDUFA1O15239 70 aa13.57□□□□□ -0.24
HOXC4-201ENST00000303406 PAX4O43316 350 aa13.57□□□□□ -0.24
HOXC4-201ENST00000303406 GAGE6Q13070 117 aa13.57□□□□□ -0.24
HOXC4-201ENST00000303406 CHCHD5Q9BSY4 110 aa13.57□□□□□ -0.24
HOXC4-201ENST00000303406 TRAV26-1A0A087WT03 109 aa13.56□□□□□ -0.24
HOXC4-201ENST00000303406 TRAV13-1A0A0B4J241 112 aa13.56□□□□□ -0.24
HOXC4-201ENST00000303406 ATP5G1P05496 136 aa13.56□□□□□ -0.24
HOXC4-201ENST00000303406 SPANXDQ9BXN6 97 aa13.56□□□□□ -0.24
HOXC4-201ENST00000303406 SPANXCQ9NY87 97 aa13.56□□□□□ -0.24
HOXC4-201ENST00000303406 SPCS1Q9Y6A9 102 aa13.56□□□□□ -0.24
HOXC4-201ENST00000303406 TENM1Q9UKZ4 2725 aa13.56□□□□□ -0.24
HOXC4-201ENST00000303406 LITAFQ99732 161 aa13.55□□□□□ -0.24
HOXC4-201ENST00000303406 NAA38Q9BRA0 125 aaKnown RBP13.55□□□□□ -0.24
HOXC4-201ENST00000303406 A0A1B0GUV1 79 aa13.54□□□□□ -0.24
HOXC4-201ENST00000303406 SMIM1B2RUZ4 78 aa13.54□□□□□ -0.24
HOXC4-201ENST00000303406 RPL24P83731 157 aaKnown RBP13.54□□□□□ -0.24
HOXC4-201ENST00000303406 OXLD1Q5BKU9 147 aa13.54□□□□□ -0.24
HOXC4-201ENST00000303406 KRTAP3-3Q9BYR6 98 aa13.54□□□□□ -0.24
HOXC4-201ENST00000303406 KRTAP3-2Q9BYR7 98 aa13.54□□□□□ -0.24
HOXC4-201ENST00000303406 ATRQ13535 2644 aa13.54□□□□□ -0.24
HOXC4-201ENST00000303406 VWFP04275 2813 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms