RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 RBX1P62877 108 aa7.48□□□□□ -1.21
COL6A3-201ENST00000295550 SLPIP03973 132 aa7.48□□□□□ -1.21
COL6A3-201ENST00000295550 Q8N7P7 452 aa7.48□□□□□ -1.21
COL6A3-201ENST00000295550 AJUBAQ96IF1 538 aa7.48□□□□□ -1.21
COL6A3-201ENST00000295550 KIR2DL5BQ8NHK3 375 aa7.47□□□□□ -1.21
COL6A3-201ENST00000295550 DEFB135Q30KP9 77 aa7.47□□□□□ -1.21
COL6A3-201ENST00000295550 Q8N9W7 124 aa7.47□□□□□ -1.21
COL6A3-201ENST00000295550 TP53TG3Q9ULZ0 132 aa7.47□□□□□ -1.21
COL6A3-201ENST00000295550 MYCNOSP40205 109 aa7.47□□□□□ -1.21
COL6A3-201ENST00000295550 CEMP1Q6PRD7 247 aaPredicted RBP7.47□□□□□ -1.21
COL6A3-201ENST00000295550 C3orf84H3BNL1 204 aa7.47□□□□□ -1.21
COL6A3-201ENST00000295550 DEFB4AO15263 64 aa7.47□□□□□ -1.21
COL6A3-201ENST00000295550 C14orf177Q52M58 125 aa7.47□□□□□ -1.21
COL6A3-201ENST00000295550 C20orf203Q8NBC4 194 aa7.47□□□□□ -1.21
COL6A3-201ENST00000295550 SP5Q6BEB4 398 aaPredicted RBP7.46□□□□□ -1.21
COL6A3-201ENST00000295550 U3KQK5 164 aa7.46□□□□□ -1.21
COL6A3-201ENST00000295550 IMUPQ9GZP8 106 aa7.46□□□□□ -1.21
COL6A3-201ENST00000295550 ZFAND2AQ8N6M9 145 aa7.46□□□□□ -1.22
COL6A3-201ENST00000295550 CLUHP3Q96NS8 147 aa7.46□□□□□ -1.22
COL6A3-201ENST00000295550 LINC00694P0DN24 101 aa7.46□□□□□ -1.22
COL6A3-201ENST00000295550 PMAIP1Q13794 54 aa7.46□□□□□ -1.22
COL6A3-201ENST00000295550 DEFB112Q30KQ8 113 aa7.46□□□□□ -1.22
COL6A3-201ENST00000295550 FBXL19-AS1Q494R0 122 aa7.46□□□□□ -1.22
COL6A3-201ENST00000295550 LINC00322Q6ZN03 302 aaPredicted RBP7.46□□□□□ -1.22
COL6A3-201ENST00000295550 COL27A1Q8IZC6 1860 aaPredicted RBP7.45□□□□□ -1.22
COL6A3-201ENST00000295550 PLA2G5P39877 138 aa7.45□□□□□ -1.22
COL6A3-201ENST00000295550 IGHV4-30-2A0A087WSY4 118 aa7.45□□□□□ -1.22
COL6A3-201ENST00000295550 PRR4Q16378 134 aa7.45□□□□□ -1.22
COL6A3-201ENST00000295550 LRRC75A-AS1Q8N1F1 130 aa7.45□□□□□ -1.22
COL6A3-201ENST00000295550 NEXN-AS1Q8NBZ9 246 aa7.45□□□□□ -1.22
COL6A3-201ENST00000295550 SIRPDQ9H106 197 aa7.45□□□□□ -1.22
COL6A3-201ENST00000295550 TRBV27A0A0K0K1C4 114 aa7.45□□□□□ -1.22
COL6A3-201ENST00000295550 CCKP06307 115 aa7.45□□□□□ -1.22
COL6A3-201ENST00000295550 IGHV4-38-2P0DP08 117 aa7.45□□□□□ -1.22
COL6A3-201ENST00000295550 ZFP36P26651 326 aaKnown RBP7.45□□□□□ -1.22
COL6A3-201ENST00000295550 C4orf3Q8WVX3 66 aa7.44□□□□□ -1.22
COL6A3-201ENST00000295550 IGKV2-24A0A0C4DH68 120 aa7.44□□□□□ -1.22
COL6A3-201ENST00000295550 MRPS12O15235 138 aaKnown RBP7.44□□□□□ -1.22
COL6A3-201ENST00000295550 DEFB1P60022 68 aa7.44□□□□□ -1.22
COL6A3-201ENST00000295550 LINC00467Q9BRT7 94 aa7.44□□□□□ -1.22
COL6A3-201ENST00000295550 C1orf158Q8N1D5 194 aa7.44□□□□□ -1.22
COL6A3-201ENST00000295550 MRPS36P82909 103 aaKnown RBP7.44□□□□□ -1.22
COL6A3-201ENST00000295550 CCDC140Q96MF4 163 aa7.44□□□□□ -1.22
COL6A3-201ENST00000295550 HIGD2AQ9BW72 106 aa7.44□□□□□ -1.22
COL6A3-201ENST00000295550 M0QXV9 152 aa7.43□□□□□ -1.22
COL6A3-201ENST00000295550 IGLV2-11P01706 119 aa7.43□□□□□ -1.22
COL6A3-201ENST00000295550 COX7CP15954 63 aa7.43□□□□□ -1.22
COL6A3-201ENST00000295550 TRBV30A0A0K0K1B3 111 aa7.43□□□□□ -1.22
COL6A3-201ENST00000295550 ADORA2A-AS1P86434 159 aa7.43□□□□□ -1.22
COL6A3-201ENST00000295550 HRCT1Q6UXD1 115 aa7.43□□□□□ -1.22
COL6A3-201ENST00000295550 LINC00269Q8N2A0 174 aa7.43□□□□□ -1.22
COL6A3-201ENST00000295550 K7EMT4 169 aa7.43□□□□□ -1.22
COL6A3-201ENST00000295550 WISP2O76076 250 aa7.43□□□□□ -1.22
COL6A3-201ENST00000295550 LINC00308Q8TCZ7 52 aa7.42□□□□□ -1.22
COL6A3-201ENST00000295550 REG3AQ06141 175 aa7.42□□□□□ -1.22
COL6A3-201ENST00000295550 C9orf85Q96MD7 179 aa7.42□□□□□ -1.22
COL6A3-201ENST00000295550 SERP1Q9Y6X1 66 aa7.42□□□□□ -1.22
COL6A3-201ENST00000295550 TRBV6-5A0A0K0K1A5 114 aa7.42□□□□□ -1.22
COL6A3-201ENST00000295550 TMEM223A0PJW6 202 aa7.42□□□□□ -1.22
COL6A3-201ENST00000295550 TRBV10-1A0A0K0K1A3 114 aa7.42□□□□□ -1.22
COL6A3-201ENST00000295550 TMEM89A2RUT3 159 aa7.42□□□□□ -1.22
COL6A3-201ENST00000295550 GPHB5Q86YW7 130 aa7.42□□□□□ -1.22
COL6A3-201ENST00000295550 LY6LH3BQJ8 138 aa7.41□□□□□ -1.22
COL6A3-201ENST00000295550 Q8NA96 180 aa7.41□□□□□ -1.22
COL6A3-201ENST00000295550 IBA57-AS1B1ANH7 110 aa7.41□□□□□ -1.22
COL6A3-201ENST00000295550 CHCHD10Q8WYQ3 142 aaPredicted RBP7.41□□□□□ -1.22
COL6A3-201ENST00000295550 SMIM26A0A096LP01 95 aa7.4□□□□□ -1.22
COL6A3-201ENST00000295550 MIFP14174 115 aa7.4□□□□□ -1.22
COL6A3-201ENST00000295550 FAM19A1Q7Z5A9 133 aa7.4□□□□□ -1.22
COL6A3-201ENST00000295550 WFDC13Q8IUB5 93 aa7.4□□□□□ -1.22
COL6A3-201ENST00000295550 Q8N9L7 120 aa7.4□□□□□ -1.22
COL6A3-201ENST00000295550 H7C423 109 aa7.4□□□□□ -1.22
COL6A3-201ENST00000295550 LRCOL1A6NCL2 159 aa7.4□□□□□ -1.22
COL6A3-201ENST00000295550 CDKN2A-AS1Q9UH64 79 aa7.4□□□□□ -1.22
COL6A3-201ENST00000295550 IGHV4-61A0A0C4DH41 118 aa7.4□□□□□ -1.22
COL6A3-201ENST00000295550 ZNF80P51504 273 aaPredicted RBP7.4□□□□□ -1.22
COL6A3-201ENST00000295550 A0A087WZ39 114 aa7.4□□□□□ -1.23
COL6A3-201ENST00000295550 A0A0J9YX75 114 aa7.4□□□□□ -1.23
COL6A3-201ENST00000295550 IGHV4-30-4P0DP06 118 aa7.4□□□□□ -1.23
COL6A3-201ENST00000295550 IGHV4-31P0DP07 118 aa7.4□□□□□ -1.23
COL6A3-201ENST00000295550 A0A096LNI7 61 aa7.4□□□□□ -1.23
COL6A3-201ENST00000295550 DCANP1Q8TF63 244 aa7.39□□□□□ -1.23
COL6A3-201ENST00000295550 ODF3Q96PU9 254 aa7.39□□□□□ -1.23
COL6A3-201ENST00000295550 BPTFQ12830 3046 aa7.39□□□□□ -1.23
COL6A3-201ENST00000295550 FAM30AQ9NZY2 134 aa7.39□□□□□ -1.23
COL6A3-201ENST00000295550 CRYGDP07320 174 aa7.39□□□□□ -1.23
COL6A3-201ENST00000295550 PRO3102Q9H379 93 aa7.39□□□□□ -1.23
COL6A3-201ENST00000295550 XGP55808 180 aa7.38□□□□□ -1.23
COL6A3-201ENST00000295550 ZNF22P17026 224 aaPredicted RBP7.38□□□□□ -1.23
COL6A3-201ENST00000295550 C22orf34Q6ZV56 151 aa7.38□□□□□ -1.23
COL6A3-201ENST00000295550 CFAP126Q5VTH2 177 aa7.38□□□□□ -1.23
COL6A3-201ENST00000295550 FAM222AQ5U5X8 452 aa7.38□□□□□ -1.23
COL6A3-201ENST00000295550 MAPKAPK5-AS1Q8N8E1 139 aa7.38□□□□□ -1.23
COL6A3-201ENST00000295550 UNQ9165/PRO28630Q6UXU0 137 aa7.38□□□□□ -1.23
COL6A3-201ENST00000295550 RETNQ9HD89 108 aa7.38□□□□□ -1.23
COL6A3-201ENST00000295550 PRO0255Q9UI72 69 aa7.37□□□□□ -1.23
COL6A3-201ENST00000295550 LINC00310P59036 64 aa7.37□□□□□ -1.23
COL6A3-201ENST00000295550 EBI3Q14213 229 aa7.37□□□□□ -1.23
COL6A3-201ENST00000295550 KLK5Q9Y337 293 aaPredicted RBP7.37□□□□□ -1.23
COL6A3-201ENST00000295550 LST1O00453 97 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms