RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 Q8N976 141 aa13.75□□□□□ -0.21
PCDH1-201ENST00000287008 NPSP0C0P6 89 aa13.75□□□□□ -0.21
PCDH1-201ENST00000287008 B9D2Q9BPU9 175 aa13.75□□□□□ -0.21
PCDH1-201ENST00000287008 LRP4O75096 1905 aa13.74□□□□□ -0.21
PCDH1-201ENST00000287008 M0QY20 66 aa13.74□□□□□ -0.21
PCDH1-201ENST00000287008 CDPF1Q6NVV7 123 aa13.74□□□□□ -0.21
PCDH1-201ENST00000287008 JMJD7-PLA2G4BH0Y9G9 81 aa13.73□□□□□ -0.21
PCDH1-201ENST00000287008 ACYP1P07311 99 aa13.72□□□□□ -0.21
PCDH1-201ENST00000287008 KPRPQ5T749 579 aaPredicted RBP13.72□□□□□ -0.21
PCDH1-201ENST00000287008 COX7BP24311 80 aa13.72□□□□□ -0.21
PCDH1-201ENST00000287008 CRIP1P50238 77 aa13.72□□□□□ -0.21
PCDH1-201ENST00000287008 SPATA12Q7Z6I5 190 aa13.72□□□□□ -0.21
PCDH1-201ENST00000287008 PRB2P02812 416 aaPredicted RBP13.72□□□□□ -0.21
PCDH1-201ENST00000287008 SPANXCQ9NY87 97 aa13.72□□□□□ -0.21
PCDH1-201ENST00000287008 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.71□□□□□ -0.22
PCDH1-201ENST00000287008 IGLV4-3A0A075B6K6 122 aa13.7□□□□□ -0.22
PCDH1-201ENST00000287008 RBX1P62877 108 aa13.7□□□□□ -0.22
PCDH1-201ENST00000287008 A0A087WZ39 114 aa13.69□□□□□ -0.22
PCDH1-201ENST00000287008 KLLNB2CW77 178 aa13.69□□□□□ -0.22
PCDH1-201ENST00000287008 IGLV2-18A0A075B6J9 118 aa13.69□□□□□ -0.22
PCDH1-201ENST00000287008 PROK1P58294 105 aa13.69□□□□□ -0.22
PCDH1-201ENST00000287008 MIAQ16674 131 aa13.69□□□□□ -0.22
PCDH1-201ENST00000287008 DCANP1Q8TF63 244 aa13.69□□□□□ -0.22
PCDH1-201ENST00000287008 IGHV4-30-4P0DP06 118 aa13.69□□□□□ -0.22
PCDH1-201ENST00000287008 NFE4Q86UQ8 179 aa13.69□□□□□ -0.22
PCDH1-201ENST00000287008 SYCNQ0VAF6 134 aa13.68□□□□□ -0.22
PCDH1-201ENST00000287008 PTPRSQ13332 1948 aa13.68□□□□□ -0.22
PCDH1-201ENST00000287008 RBM3P98179 157 aaKnown RBP13.68□□□□□ -0.22
PCDH1-201ENST00000287008 A0A0J9YXY3 114 aa13.67□□□□□ -0.22
PCDH1-201ENST00000287008 RNASE3P12724 160 aaKnown RBP13.66□□□□□ -0.22
PCDH1-201ENST00000287008 TRBV27A0A0K0K1C4 114 aa13.66□□□□□ -0.22
PCDH1-201ENST00000287008 TMEM256-PLSCR3K7ERE1 68 aa13.66□□□□□ -0.22
PCDH1-201ENST00000287008 TRBV6-5A0A0K0K1A5 114 aa13.65□□□□□ -0.22
PCDH1-201ENST00000287008 LRCOL1A6NCL2 159 aa13.65□□□□□ -0.22
PCDH1-201ENST00000287008 ZNF22P17026 224 aaPredicted RBP13.65□□□□□ -0.22
PCDH1-201ENST00000287008 TEN1Q86WV5 123 aa13.65□□□□□ -0.22
PCDH1-201ENST00000287008 XAGE1AQ9HD64 81 aa13.65□□□□□ -0.22
PCDH1-201ENST00000287008 IGLV2-11P01706 119 aa13.64□□□□□ -0.23
PCDH1-201ENST00000287008 IBA57-AS1B1ANH7 110 aa13.64□□□□□ -0.23
PCDH1-201ENST00000287008 ODF3L2Q3SX64 289 aa13.64□□□□□ -0.23
PCDH1-201ENST00000287008 LELP1Q5T871 98 aa13.64□□□□□ -0.23
PCDH1-201ENST00000287008 CLEC2BQ92478 149 aa13.64□□□□□ -0.23
PCDH1-201ENST00000287008 H3BT86 120 aa13.63□□□□□ -0.23
PCDH1-201ENST00000287008 F8P00451 2351 aa13.63□□□□□ -0.23
PCDH1-201ENST00000287008 PDE6GP18545 87 aa13.63□□□□□ -0.23
PCDH1-201ENST00000287008 PRR9Q5T870 116 aa13.63□□□□□ -0.23
PCDH1-201ENST00000287008 FAM19A1Q7Z5A9 133 aa13.63□□□□□ -0.23
PCDH1-201ENST00000287008 A0A1B0GX51 115 aa13.62□□□□□ -0.23
PCDH1-201ENST00000287008 M0R2N4 97 aa13.62□□□□□ -0.23
PCDH1-201ENST00000287008 LY6G6CO95867 125 aa13.62□□□□□ -0.23
PCDH1-201ENST00000287008 COL5A1P20908 1838 aaPredicted RBP13.61□□□□□ -0.23
PCDH1-201ENST00000287008 MRGPRG-AS1Q2M3A8 158 aa13.61□□□□□ -0.23
PCDH1-201ENST00000287008 IGLV1-51P01701 117 aa13.61□□□□□ -0.23
PCDH1-201ENST00000287008 C11orf21Q9P2W6 132 aa13.61□□□□□ -0.23
PCDH1-201ENST00000287008 A0A096LNI7 61 aa13.61□□□□□ -0.23
PCDH1-201ENST00000287008 TRBV10-2A0A0K0K1G8 114 aa13.61□□□□□ -0.23
PCDH1-201ENST00000287008 PYGO1Q9Y3Y4 419 aa13.61□□□□□ -0.23
PCDH1-201ENST00000287008 MP68P56378 58 aa13.6□□□□□ -0.23
PCDH1-201ENST00000287008 PRM2P04554 102 aa13.6□□□□□ -0.23
PCDH1-201ENST00000287008 C7orf33Q8WU49 177 aa13.6□□□□□ -0.23
PCDH1-201ENST00000287008 RNF185Q96GF1 192 aa13.6□□□□□ -0.23
PCDH1-201ENST00000287008 A0A0B4J2C4 111 aa13.6□□□□□ -0.23
PCDH1-201ENST00000287008 CD164L2Q6UWJ8 174 aa13.6□□□□□ -0.23
PCDH1-201ENST00000287008 CRIP2P52943 208 aaPredicted RBP13.6□□□□□ -0.23
PCDH1-201ENST00000287008 A0A0J9YWU9 116 aa13.59□□□□□ -0.23
PCDH1-201ENST00000287008 C9orf85Q96MD7 179 aa13.59□□□□□ -0.23
PCDH1-201ENST00000287008 TNRC6BQ9UPQ9 1833 aaKnown RBP13.59□□□□□ -0.23
PCDH1-201ENST00000287008 IGKV3D-7A0A0C4DH55 119 aa13.59□□□□□ -0.23
PCDH1-201ENST00000287008 NANOS2P60321 138 aaKnown RBP13.59□□□□□ -0.23
PCDH1-201ENST00000287008 LOC100131303A0A0U1RQF7 123 aa13.58□□□□□ -0.24
PCDH1-201ENST00000287008 CLUHP3Q96NS8 147 aa13.58□□□□□ -0.24
PCDH1-201ENST00000287008 FAM19A5Q7Z5A7 132 aaPredicted RBP13.58□□□□□ -0.24
PCDH1-201ENST00000287008 IGKV2D-26A0A0A0MRZ7 120 aa13.57□□□□□ -0.24
PCDH1-201ENST00000287008 H0Y9J4 135 aa13.57□□□□□ -0.24
PCDH1-201ENST00000287008 WFDC2Q14508 124 aa13.57□□□□□ -0.24
PCDH1-201ENST00000287008 TMEM223A0PJW6 202 aa13.56□□□□□ -0.24
PCDH1-201ENST00000287008 PIK3CD-AS1Q5SR53 167 aa13.56□□□□□ -0.24
PCDH1-201ENST00000287008 ANKRD17O75179 2603 aaKnown RBP13.55□□□□□ -0.24
PCDH1-201ENST00000287008 TSHBP01222 138 aa13.54□□□□□ -0.24
PCDH1-201ENST00000287008 C16orf95Q9H693 158 aa13.54□□□□□ -0.24
PCDH1-201ENST00000287008 ZNF580Q9UK33 172 aa13.54□□□□□ -0.24
PCDH1-201ENST00000287008 POLR2KP53803 58 aaKnown RBP13.54□□□□□ -0.24
PCDH1-201ENST00000287008 LINC00308Q8TCZ7 52 aa13.54□□□□□ -0.24
PCDH1-201ENST00000287008 U3KQK5 164 aa13.54□□□□□ -0.24
PCDH1-201ENST00000287008 TAX1BP3O14907 124 aa13.53□□□□□ -0.24
PCDH1-201ENST00000287008 SPANXB1Q9NS25 103 aaPredicted RBP13.53□□□□□ -0.24
PCDH1-201ENST00000287008 LINC00526Q96FQ7 95 aa13.52□□□□□ -0.24
PCDH1-201ENST00000287008 LINC00959A0A1B0GUT2 108 aa13.52□□□□□ -0.24
PCDH1-201ENST00000287008 IGLV4-69A0A075B6H9 119 aa13.52□□□□□ -0.25
PCDH1-201ENST00000287008 NRACQ8N912 160 aa13.52□□□□□ -0.25
PCDH1-201ENST00000287008 BRI3O95415 125 aa13.51□□□□□ -0.25
PCDH1-201ENST00000287008 EDN2P20800 178 aa13.51□□□□□ -0.25
PCDH1-201ENST00000287008 UBE2D3P61077 147 aa13.5□□□□□ -0.25
PCDH1-201ENST00000287008 UBE2D2P62837 147 aa13.5□□□□□ -0.25
PCDH1-201ENST00000287008 NUPR2A6NF83 97 aa13.49□□□□□ -0.25
PCDH1-201ENST00000287008 CHKB-CPT1BH3BT56 60 aa13.49□□□□□ -0.25
PCDH1-201ENST00000287008 C6orf99Q4VX62 202 aa13.49□□□□□ -0.25
PCDH1-201ENST00000287008 RETNQ9HD89 108 aa13.48□□□□□ -0.25
PCDH1-201ENST00000287008 C14orf132Q9NPU4 83 aa13.48□□□□□ -0.25
PCDH1-201ENST00000287008 MRPS36P82909 103 aaKnown RBP13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms