RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 GAGE5Q13069 117 aa8.77□□□□□ -1
USHBP1-201ENST00000252597 GAGE6Q13070 117 aa8.77□□□□□ -1
USHBP1-201ENST00000252597 C10orf105Q8TEF2 133 aa8.77□□□□□ -1
USHBP1-201ENST00000252597 GAGE12JA6NER3 117 aa8.77□□□□□ -1.01
USHBP1-201ENST00000252597 GAGE4Q13068 117 aa8.77□□□□□ -1.01
USHBP1-201ENST00000252597 CIRBPQ14011 172 aaKnown RBP8.77□□□□□ -1.01
USHBP1-201ENST00000252597 SMIM20Q8N5G0 67 aa8.77□□□□□ -1.01
USHBP1-201ENST00000252597 K7EQG2 157 aa8.77□□□□□ -1.01
USHBP1-201ENST00000252597 TMEM61Q8N0U2 210 aa8.77□□□□□ -1.01
USHBP1-201ENST00000252597 C9orf85Q96MD7 179 aa8.77□□□□□ -1.01
USHBP1-201ENST00000252597 CHCHD5Q9BSY4 110 aa8.77□□□□□ -1.01
USHBP1-201ENST00000252597 B4DSR2 109 aa8.76□□□□□ -1.01
USHBP1-201ENST00000252597 FAM19A4Q96LR4 140 aa8.76□□□□□ -1.01
USHBP1-201ENST00000252597 UBR5O95071 2799 aaPredicted RBP8.76□□□□□ -1.01
USHBP1-201ENST00000252597 NBPF19A0A087WUL8 3843 aa8.76□□□□□ -1.01
USHBP1-201ENST00000252597 SHISA2Q6UWI4 295 aa8.76□□□□□ -1.01
USHBP1-201ENST00000252597 IGHV1-58A0A0C4DH39 117 aa8.75□□□□□ -1.01
USHBP1-201ENST00000252597 NDUFV3P56181 108 aaKnown RBP8.75□□□□□ -1.01
USHBP1-201ENST00000252597 TEP1Q99973 2627 aaKnown RBP8.75□□□□□ -1.01
USHBP1-201ENST00000252597 TRBV10-2A0A0K0K1G8 114 aa8.75□□□□□ -1.01
USHBP1-201ENST00000252597 NSUN5P1Q3KNT7 163 aa8.75□□□□□ -1.01
USHBP1-201ENST00000252597 H7C423 109 aa8.75□□□□□ -1.01
USHBP1-201ENST00000252597 GAGE7O76087 117 aa8.75□□□□□ -1.01
USHBP1-201ENST00000252597 NXPH4O95158 308 aa8.75□□□□□ -1.01
USHBP1-201ENST00000252597 GAGE12FP0CL80 117 aa8.75□□□□□ -1.01
USHBP1-201ENST00000252597 GAGE12GP0CL81 117 aa8.75□□□□□ -1.01
USHBP1-201ENST00000252597 GAGE12IP0CL82 117 aa8.75□□□□□ -1.01
USHBP1-201ENST00000252597 Q9HAA7 133 aa8.75□□□□□ -1.01
USHBP1-201ENST00000252597 IGLV1-40P01703 118 aa8.74□□□□□ -1.01
USHBP1-201ENST00000252597 RNASE1P07998 156 aaKnown RBP8.74□□□□□ -1.01
USHBP1-201ENST00000252597 PIK3CD-AS1Q5SR53 167 aa8.74□□□□□ -1.01
USHBP1-201ENST00000252597 A0A0B4J2C4 111 aa8.74□□□□□ -1.01
USHBP1-201ENST00000252597 C19orf54Q5BKX5 351 aa8.74□□□□□ -1.01
USHBP1-201ENST00000252597 OR13C6PQ8NH95 151 aa8.74□□□□□ -1.01
USHBP1-201ENST00000252597 TRBV6-5A0A0K0K1A5 114 aa8.74□□□□□ -1.01
USHBP1-201ENST00000252597 PSMB8P28062 276 aa8.74□□□□□ -1.01
USHBP1-201ENST00000252597 COX6A2Q02221 97 aa8.73□□□□□ -1.01
USHBP1-201ENST00000252597 VSIG2Q96IQ7 327 aa8.73□□□□□ -1.01
USHBP1-201ENST00000252597 ZNF415Q09FC8 603 aa8.73□□□□□ -1.01
USHBP1-201ENST00000252597 K7EMT4 169 aa8.72□□□□□ -1.01
USHBP1-201ENST00000252597 PFN2P35080 140 aa8.72□□□□□ -1.01
USHBP1-201ENST00000252597 UBE2L6O14933 153 aa8.72□□□□□ -1.01
USHBP1-201ENST00000252597 RPL35AP18077 110 aaKnown RBP8.72□□□□□ -1.01
USHBP1-201ENST00000252597 MIAQ16674 131 aa8.72□□□□□ -1.01
USHBP1-201ENST00000252597 GAGE2AQ6NT46 116 aa8.72□□□□□ -1.01
USHBP1-201ENST00000252597 TRGV2A0A075B6R0 118 aa8.71□□□□□ -1.01
USHBP1-201ENST00000252597 H3BUA1 57 aa8.71□□□□□ -1.01
USHBP1-201ENST00000252597 LINC00694P0DN24 101 aa8.71□□□□□ -1.02
USHBP1-201ENST00000252597 STHQ8IWL8 128 aa8.7□□□□□ -1.02
USHBP1-201ENST00000252597 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.7□□□□□ -1.02
USHBP1-201ENST00000252597 TMEM101Q96IK0 257 aa8.7□□□□□ -1.02
USHBP1-201ENST00000252597 APCP25054 2843 aa8.7□□□□□ -1.02
USHBP1-201ENST00000252597 ATRQ13535 2644 aa8.7□□□□□ -1.02
USHBP1-201ENST00000252597 RBMY1BA6NDE4 496 aaKnown RBP8.7□□□□□ -1.02
USHBP1-201ENST00000252597 RBMY1EA6NEQ0 496 aaKnown RBP8.7□□□□□ -1.02
USHBP1-201ENST00000252597 RBMY1DP0C7P1 496 aaKnown RBP8.7□□□□□ -1.02
USHBP1-201ENST00000252597 LINC00158P58513 81 aa8.7□□□□□ -1.02
USHBP1-201ENST00000252597 ODF3Q96PU9 254 aa8.7□□□□□ -1.02
USHBP1-201ENST00000252597 FAM236AA0A1B0GUQ0 79 aa8.7□□□□□ -1.02
USHBP1-201ENST00000252597 FAM236BA0A1B0GV22 79 aa8.7□□□□□ -1.02
USHBP1-201ENST00000252597 UBE2D4Q9Y2X8 147 aa8.7□□□□□ -1.02
USHBP1-201ENST00000252597 PLA2G2AP14555 144 aa8.69□□□□□ -1.02
USHBP1-201ENST00000252597 Q8N2B8 174 aa8.69□□□□□ -1.02
USHBP1-201ENST00000252597 TRBV7-9A0A0J9YWB2 115 aa8.69□□□□□ -1.02
USHBP1-201ENST00000252597 CLPSL2Q6UWE3 100 aa8.69□□□□□ -1.02
USHBP1-201ENST00000252597 YAE1D1Q9NRH1 226 aa8.69□□□□□ -1.02
USHBP1-201ENST00000252597 TRBV30A0A0K0K1B3 111 aa8.69□□□□□ -1.02
USHBP1-201ENST00000252597 RPL32P62910 135 aaKnown RBP8.69□□□□□ -1.02
USHBP1-201ENST00000252597 HERV-K104P63124 156 aa8.69□□□□□ -1.02
USHBP1-201ENST00000252597 MRPS36P82909 103 aaKnown RBP8.69□□□□□ -1.02
USHBP1-201ENST00000252597 Q6ZTI0 123 aa8.69□□□□□ -1.02
USHBP1-201ENST00000252597 A0A096LPF7 62 aa8.68□□□□□ -1.02
USHBP1-201ENST00000252597 NOP10Q9NPE3 64 aaKnown RBP8.68□□□□□ -1.02
USHBP1-201ENST00000252597 ATP5G1P05496 136 aa8.68□□□□□ -1.02
USHBP1-201ENST00000252597 NHLRC4P0CG21 123 aaPredicted RBP8.68□□□□□ -1.02
USHBP1-201ENST00000252597 CITED1Q99966 193 aa8.68□□□□□ -1.02
USHBP1-201ENST00000252597 CHCHD7Q9BUK0 85 aa8.68□□□□□ -1.02
USHBP1-201ENST00000252597 SETXQ7Z333 2677 aaKnown RBP8.67□□□□□ -1.02
USHBP1-201ENST00000252597 WFDC10AQ9H1F0 79 aa8.67□□□□□ -1.02
USHBP1-201ENST00000252597 BAALC-AS2P0C853 105 aa8.67□□□□□ -1.02
USHBP1-201ENST00000252597 LOC100131303A0A0U1RQF7 123 aa8.67□□□□□ -1.02
USHBP1-201ENST00000252597 INSP01308 110 aa8.67□□□□□ -1.02
USHBP1-201ENST00000252597 KRTAP10-9P60411 292 aa8.67□□□□□ -1.02
USHBP1-201ENST00000252597 C5orf38Q86SI9 138 aa8.67□□□□□ -1.02
USHBP1-201ENST00000252597 LINC00308Q8TCZ7 52 aa8.67□□□□□ -1.02
USHBP1-201ENST00000252597 LITAFQ99732 161 aa8.67□□□□□ -1.02
USHBP1-201ENST00000252597 DNAL4O96015 105 aa8.66□□□□□ -1.02
USHBP1-201ENST00000252597 RPL36AP83881 106 aaKnown RBP8.66□□□□□ -1.02
USHBP1-201ENST00000252597 SBSPONQ8IVN8 264 aa8.66□□□□□ -1.02
USHBP1-201ENST00000252597 RPL36ALQ969Q0 106 aaKnown RBP8.66□□□□□ -1.02
USHBP1-201ENST00000252597 TINCRA0A1B0GVN0 87 aa8.65□□□□□ -1.02
USHBP1-201ENST00000252597 DAZ2Q13117 558 aaKnown RBP8.65□□□□□ -1.02
USHBP1-201ENST00000252597 DAZ4Q86SG3 579 aaKnown RBP8.65□□□□□ -1.02
USHBP1-201ENST00000252597 MAP6D1Q9H9H5 199 aa8.65□□□□□ -1.02
USHBP1-201ENST00000252597 DAZ3Q9NR90 486 aaKnown RBP8.65□□□□□ -1.02
USHBP1-201ENST00000252597 VPREB3Q9UKI3 123 aa8.65□□□□□ -1.02
USHBP1-201ENST00000252597 PAX4O43316 350 aa8.65□□□□□ -1.02
USHBP1-201ENST00000252597 LINC01356Q8N9X3 169 aa8.65□□□□□ -1.02
USHBP1-201ENST00000252597 SPANXA1Q9NS26 97 aa8.65□□□□□ -1.02
USHBP1-201ENST00000252597 J3QKU1 62 aa8.65□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms