RNA–Protein interactions for RNA: YMR223W

UBP8, Transcript of Ubiquitin-specific protease component of the SAGA acetylation complex, yeast

Gene UBP8, Length 1,416 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP8	YMR223W	YPL071C	Q02864	156 aa		4.21	□□□□□ -1.73
UBP8	YMR223W	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	4.21	□□□□□ -1.73	not detected
UBP8	YMR223W	CET1	O13297	549 aa	Predicted RBP	4.21	□□□□□ -1.74
UBP8	YMR223W	SEC12	P11655	471 aa		4.21	□□□□□ -1.74
UBP8	YMR223W	BET2	P20133	325 aa		4.21	□□□□□ -1.74
UBP8	YMR223W	AEP2	P22136	580 aa		4.21	□□□□□ -1.74
UBP8	YMR223W	DSS4	P32601	143 aa		4.21	□□□□□ -1.74
UBP8	YMR223W	RMA1	P36001	430 aa	Known RBP	4.21	□□□□□ -1.74
UBP8	YMR223W	MNN1	P39106	762 aa		4.21	□□□□□ -1.74
UBP8	YMR223W	PMT3	P47190	753 aa		4.21	□□□□□ -1.74
UBP8	YMR223W	DNM1	P54861	757 aa		4.21	□□□□□ -1.74
UBP8	YMR223W	MTD1	Q02046	320 aa	Known RBP	4.21	□□□□□ -1.74
UBP8	YMR223W	HER1	Q12276	1246 aa		4.21	□□□□□ -1.74
UBP8	YMR223W	ADR1	P07248	1323 aa		4.2	□□□□□ -1.74
UBP8	YMR223W	RPS21A	P0C0V8	87 aa	Known RBP	4.2	□□□□□ -1.74
UBP8	YMR223W	YPK1	P12688	680 aa	Known RBP	4.2	□□□□□ -1.74
UBP8	YMR223W	PPG1	P32838	368 aa		4.2	□□□□□ -1.74
UBP8	YMR223W	CCT4	P39078	528 aa	Known RBP	4.2	□□□□□ -1.74
UBP8	YMR223W	RAD26	P40352	1085 aa		4.2	□□□□□ -1.74
UBP8	YMR223W	RNH70	P53331	553 aa		4.2	□□□□□ -1.74
UBP8	YMR223W	SQS1	P53866	767 aa	Known RBP	4.2	□□□□□ -1.74
UBP8	YMR223W	CBP3	P21560	335 aa		4.19	□□□□□ -1.74
UBP8	YMR223W	CDC5	P32562	705 aa		4.19	□□□□□ -1.74
UBP8	YMR223W	RRP8	P38961	392 aa	Known RBP	4.19	□□□□□ -1.74
UBP8	YMR223W	YJR008W	P47085	338 aa		4.19	□□□□□ -1.74
UBP8	YMR223W	RTS3	P53289	263 aa		4.19	□□□□□ -1.74
UBP8	YMR223W	CYK3	Q07533	885 aa		4.19	□□□□□ -1.74
UBP8	YMR223W	GCS1	P35197	352 aa		4.18	□□□□□ -1.74
UBP8	YMR223W	CIR1	P42940	261 aa		4.18	□□□□□ -1.74
UBP8	YMR223W	UME1	Q03010	460 aa		4.18	□□□□□ -1.74
UBP8	YMR223W	SRL1	Q08673	210 aa		4.18	□□□□□ -1.74
UBP8	YMR223W	YOR111W	Q99210	232 aa		4.18	□□□□□ -1.74
UBP8	YMR223W	COQ3	P27680	312 aa		4.17	□□□□□ -1.74
UBP8	YMR223W	SRP68	P38687	599 aa	Known RBP	4.17	□□□□□ -1.74
UBP8	YMR223W	LAS21	P40367	830 aa		4.17	□□□□□ -1.74
UBP8	YMR223W	RNR4	P49723	345 aa	Known RBP	4.17	□□□□□ -1.74
UBP8	YMR223W	RAD33	Q04231	177 aa		4.17	□□□□□ -1.74
UBP8	YMR223W	BUD7	Q08754	746 aa		4.17	□□□□□ -1.74
UBP8	YMR223W	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	4.17	□□□□□ -1.74	not detected
UBP8	YMR223W	PNO1	Q99216	274 aa	Known RBP	4.17	□□□□□ -1.74
UBP8	YMR223W	YPT1	P01123	206 aa	Known RBP	4.16	□□□□□ -1.74
UBP8	YMR223W	MAK32	P23060	363 aa		4.16	□□□□□ -1.74
UBP8	YMR223W	YCP4	P25349	247 aa	Known RBP	4.16	□□□□□ -1.74
UBP8	YMR223W	CWH43	P25618	953 aa		4.16	□□□□□ -1.74
UBP8	YMR223W	HXT4	P32467	576 aa		4.16	□□□□□ -1.74
UBP8	YMR223W	SDH8	P38345	138 aa		4.16	□□□□□ -1.74
UBP8	YMR223W	YAT2	P40017	923 aa		4.16	□□□□□ -1.74
UBP8	YMR223W	MDG1	P53885	366 aa		4.16	□□□□□ -1.74
UBP8	YMR223W	YNL092W	P53934	400 aa		4.16	□□□□□ -1.74
UBP8	YMR223W	RPL15B	P54780	204 aa	Predicted RBP	4.16	□□□□□ -1.74
UBP8	YMR223W	PCK1	P10963	549 aa		4.15	□□□□□ -1.74
UBP8	YMR223W	AIM17	P23180	465 aa	Known RBP	4.15	□□□□□ -1.74
UBP8	YMR223W	ATO2	P32907	282 aa		4.15	□□□□□ -1.74
UBP8	YMR223W	DOS2	P54858	310 aa		4.15	□□□□□ -1.74
UBP8	YMR223W	NGL1	Q08213	363 aa	Known RBP	4.15	□□□□□ -1.74
UBP8	YMR223W	VPS5	Q92331	675 aa		4.15	□□□□□ -1.74
UBP8	YMR223W	YEL076C-A	P0CX16	216 aa		4.14	□□□□□ -1.75
UBP8	YMR223W	YLR464W	P0CX17	216 aa		4.14	□□□□□ -1.75
UBP8	YMR223W	FTH1	P38310	465 aa		4.14	□□□□□ -1.75
UBP8	YMR223W	YEL076C	P39971	216 aa		4.14	□□□□□ -1.75
UBP8	YMR223W	VTC3	Q02725	835 aa		4.14	□□□□□ -1.75
UBP8	YMR223W	CHO2	P05374	869 aa	Known RBP	4.13	□□□□□ -1.75
UBP8	YMR223W	TOM71	P38825	639 aa	Known RBP	4.13	□□□□□ -1.75
UBP8	YMR223W	MAM1	P40065	302 aa		4.13	□□□□□ -1.75
UBP8	YMR223W	GPP1	P41277	250 aa	Known RBP	4.13	□□□□□ -1.75
UBP8	YMR223W	MDV1	P47025	714 aa		4.13	□□□□□ -1.75
UBP8	YMR223W	BUD21	Q08492	214 aa	Predicted RBP	4.13	□□□□□ -1.75
UBP8	YMR223W	ILS1	P09436	1072 aa	Known RBP	4.12	□□□□□ -1.75
UBP8	YMR223W	GDA1	P32621	518 aa		4.12	□□□□□ -1.75
UBP8	YMR223W	NMD2	P38798	1089 aa	Known RBP	4.12	□□□□□ -1.75
UBP8	YMR223W	NOP2	P40991	618 aa	Known RBP	4.12	□□□□□ -1.75
UBP8	YMR223W	MAF1	P41910	395 aa		4.12	□□□□□ -1.75
UBP8	YMR223W	LYS20	P48570	428 aa	Known RBP	4.12	□□□□□ -1.75
UBP8	YMR223W	GPG1	P53130	126 aa		4.12	□□□□□ -1.75
UBP8	YMR223W	COG2	P53271	262 aa		4.12	□□□□□ -1.75
UBP8	YMR223W	SUB1	P54000	292 aa	Known RBP	4.12	□□□□□ -1.75
UBP8	YMR223W	VPS72	Q03388	795 aa		4.12	□□□□□ -1.75
UBP8	YMR223W	ATX2	Q12067	313 aa		4.12	□□□□□ -1.75
UBP8	YMR223W	PLC1	P32383	869 aa		4.12	□□□□□ -1.75
UBP8	YMR223W	IMD2	P38697	523 aa	Known RBP	4.12	□□□□□ -1.75
UBP8	YMR223W	MTG2	P38860	518 aa		4.12	□□□□□ -1.75
UBP8	YMR223W	IRC5	P43610	853 aa		4.12	□□□□□ -1.75
UBP8	YMR223W	IMD3	P50095	523 aa	Known RBP	4.12	□□□□□ -1.75
UBP8	YMR223W	MDR1	P53258	950 aa		4.12	□□□□□ -1.75
UBP8	YMR223W	BOP3	P53958	396 aa		4.12	□□□□□ -1.75
UBP8	YMR223W	SNU56	Q03782	492 aa	Known RBP	4.12	□□□□□ -1.75
UBP8	YMR223W	SNA4	Q07549	140 aa		4.12	□□□□□ -1.75
UBP8	YMR223W	UBX3	Q12229	455 aa		4.12	□□□□□ -1.75
UBP8	YMR223W	NUP145	P49687	1317 aa		4.12	□□□□□ -1.75
UBP8	YMR223W	KES1	P35844	434 aa	Known RBP	4.11	□□□□□ -1.75
UBP8	YMR223W	FLO5	P38894	1075 aa		4.11	□□□□□ -1.75
UBP8	YMR223W	CIN1	P40987	1014 aa		4.11	□□□□□ -1.75
UBP8	YMR223W	YNR029C	P53729	429 aa	Known RBP	4.11	□□□□□ -1.75
UBP8	YMR223W	SKY1	Q03656	742 aa		4.11	□□□□□ -1.75
UBP8	YMR223W	ATP12	P22135	325 aa		4.1	□□□□□ -1.75
UBP8	YMR223W	RPT3	P33298	428 aa	Known RBP	4.1	□□□□□ -1.75
UBP8	YMR223W	GET3	Q12154	354 aa	Known RBP	4.1	□□□□□ -1.75
UBP8	YMR223W	PEA2	P40091	420 aa		4.09	□□□□□ -1.75
UBP8	YMR223W	YIR016W	P40572	265 aa		4.09	□□□□□ -1.75
UBP8	YMR223W	COS12	P53053	380 aa		4.09	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 14 ms