RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 EMILIN2Q9BXX0 1053 aa8□□□□□ -1.13
CD44-239ENST00000639002 C12orf49Q9H741 205 aa8□□□□□ -1.13
CD44-239ENST00000639002 PIDD1Q9HB75 910 aa8□□□□□ -1.13
CD44-239ENST00000639002 LRRC4CQ9HCJ2 640 aa8□□□□□ -1.13
CD44-239ENST00000639002 RNF19AQ9NV58 838 aa8□□□□□ -1.13
CD44-239ENST00000639002 PPM1HQ9ULR3 514 aa8□□□□□ -1.13
CD44-239ENST00000639002 U3KQE9 123 aa8□□□□□ -1.13
CD44-239ENST00000639002 NTF4P34130 210 aa7.99□□□□□ -1.13
CD44-239ENST00000639002 ABI1Q8IZP0 508 aa7.99□□□□□ -1.13
CD44-239ENST00000639002 ISL2Q96A47 359 aa7.99□□□□□ -1.13
CD44-239ENST00000639002 KRTAP4-12Q9BQ66 201 aa7.99□□□□□ -1.13
CD44-239ENST00000639002 CBX8Q9HC52 389 aa7.99□□□□□ -1.13
CD44-239ENST00000639002 BSDC1Q9NW68 430 aaPredicted RBP7.99□□□□□ -1.13
CD44-239ENST00000639002 RNGTTO60942 597 aaKnown RBP7.98□□□□□ -1.13
CD44-239ENST00000639002 LEFTY1O75610 366 aa7.98□□□□□ -1.13
CD44-239ENST00000639002 LDHBP07195 334 aaKnown RBP7.98□□□□□ -1.13
CD44-239ENST00000639002 CELA3AP09093 270 aa7.98□□□□□ -1.13
CD44-239ENST00000639002 FAM87AP0C7U9 286 aa7.98□□□□□ -1.13
CD44-239ENST00000639002 ERVK-24P63145 666 aa7.98□□□□□ -1.13
CD44-239ENST00000639002 RING1Q06587 406 aa7.98□□□□□ -1.13
CD44-239ENST00000639002 WFDC3Q8IUB2 231 aa7.98□□□□□ -1.13
CD44-239ENST00000639002 RNF214Q8ND24 703 aa7.98□□□□□ -1.13
CD44-239ENST00000639002 CEP44Q9C0F1 390 aa7.98□□□□□ -1.13
CD44-239ENST00000639002 PCOLCE2Q9UKZ9 415 aa7.98□□□□□ -1.13
CD44-239ENST00000639002 USP17L7P0C7H9 530 aa7.97□□□□□ -1.13
CD44-239ENST00000639002 ATP2B2Q01814 1243 aa7.97□□□□□ -1.13
CD44-239ENST00000639002 UBE3DQ7Z6J8 389 aa7.97□□□□□ -1.13
CD44-239ENST00000639002 VSIG10LQ86VR7 867 aa7.97□□□□□ -1.13
CD44-239ENST00000639002 FAM8A1Q9UBU6 413 aa7.97□□□□□ -1.13
CD44-239ENST00000639002 SPG7Q9UQ90 795 aa7.97□□□□□ -1.13
CD44-239ENST00000639002 CSADQ9Y600 493 aa7.97□□□□□ -1.13
CD44-239ENST00000639002 TRIM37O94972 964 aa7.96□□□□□ -1.14
CD44-239ENST00000639002 PTPN11Q06124 597 aaPredicted RBP7.96□□□□□ -1.14
CD44-239ENST00000639002 PPM1JQ5JR12 505 aa7.96□□□□□ -1.14
CD44-239ENST00000639002 DUSP23Q9BVJ7 150 aa7.96□□□□□ -1.14
CD44-239ENST00000639002 ANGEL1Q9UNK9 670 aaKnown RBP7.96□□□□□ -1.14
CD44-239ENST00000639002 DCDC2CA8MYV0 355 aa7.95□□□□□ -1.14
CD44-239ENST00000639002 CYP27C1Q4G0S4 372 aa7.95□□□□□ -1.14
CD44-239ENST00000639002 CBLL1Q75N03 491 aa7.95□□□□□ -1.14
CD44-239ENST00000639002 FAM214BQ7L5A3 538 aa7.95□□□□□ -1.14
CD44-239ENST00000639002 C12orf40Q86WS4 652 aa7.95□□□□□ -1.14
CD44-239ENST00000639002 PAK6Q9NQU5 681 aaPredicted RBP7.95□□□□□ -1.14
CD44-239ENST00000639002 PATL2C9JE40 543 aaKnown RBP7.94□□□□□ -1.14
CD44-239ENST00000639002 PCNX4Q63HM2 1172 aa7.94□□□□□ -1.14
CD44-239ENST00000639002 LLGL2Q6P1M3 1020 aa7.94□□□□□ -1.14
CD44-239ENST00000639002 SPRED2Q7Z698 418 aa7.94□□□□□ -1.14
CD44-239ENST00000639002 PLD6Q8N2A8 252 aaKnown RBP7.94□□□□□ -1.14
CD44-239ENST00000639002 FAM181AQ8N9Y4 354 aa7.94□□□□□ -1.14
CD44-239ENST00000639002 BCL7CQ8WUZ0 217 aaPredicted RBP7.94□□□□□ -1.14
CD44-239ENST00000639002 ACSBG1Q96GR2 724 aa7.94□□□□□ -1.14
CD44-239ENST00000639002 ANKRD33BA6NCL7 494 aa7.93□□□□□ -1.14
CD44-239ENST00000639002 GNA15P30679 374 aa7.93□□□□□ -1.14
CD44-239ENST00000639002 HNRNPUQ00839 825 aaKnown RBP eCLIP7.93□□□□□ -1.14
CD44-239ENST00000639002 INPP5AQ14642 412 aa7.93□□□□□ -1.14
CD44-239ENST00000639002 SND1Q7KZF4 910 aaKnown RBP eCLIP7.93□□□□□ -1.14
CD44-239ENST00000639002 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.93□□□□□ -1.14
CD44-239ENST00000639002 FBXL18Q96ME1 805 aa7.93□□□□□ -1.14
CD44-239ENST00000639002 FRMD6Q96NE9 622 aa7.93□□□□□ -1.14
CD44-239ENST00000639002 CYP8B1Q9UNU6 501 aa7.93□□□□□ -1.14
CD44-239ENST00000639002 SAMM50Q9Y512 469 aa7.93□□□□□ -1.14
CD44-239ENST00000639002 PRPF40AO75400 957 aaKnown RBP7.92□□□□□ -1.14
CD44-239ENST00000639002 BNIP3Q12983 259 aa7.92□□□□□ -1.14
CD44-239ENST00000639002 LRRC14Q15048 493 aa7.92□□□□□ -1.14
CD44-239ENST00000639002 ZNF574Q6ZN55 896 aaPredicted RBP7.92□□□□□ -1.14
CD44-239ENST00000639002 AEBP1Q8IUX7 1158 aa7.92□□□□□ -1.14
CD44-239ENST00000639002 TP53INP2Q8IXH6 220 aa7.92□□□□□ -1.14
CD44-239ENST00000639002 HEXIM2Q96MH2 286 aaKnown RBP7.92□□□□□ -1.14
CD44-239ENST00000639002 FMNL2Q96PY5 1086 aa7.92□□□□□ -1.14
CD44-239ENST00000639002 SSU72Q9NP77 194 aaKnown RBP7.92□□□□□ -1.14
CD44-239ENST00000639002 PCDHA4Q9UN74 947 aa7.92□□□□□ -1.14
CD44-239ENST00000639002 PLAGL2Q9UPG8 496 aa7.92□□□□□ -1.14
CD44-239ENST00000639002 AK5Q9Y6K8 562 aa7.92□□□□□ -1.14
CD44-239ENST00000639002 OXCT1P55809 520 aa7.91□□□□□ -1.14
CD44-239ENST00000639002 ZBTB37Q5TC79 503 aa7.91□□□□□ -1.14
CD44-239ENST00000639002 SCARA3Q6AZY7 606 aa7.91□□□□□ -1.14
CD44-239ENST00000639002 SV2BQ7L1I2 683 aa7.91□□□□□ -1.14
CD44-239ENST00000639002 KRTAP19-1Q8IUB9 90 aa7.91□□□□□ -1.14
CD44-239ENST00000639002 TOP6BLQ8N6T0 577 aa7.91□□□□□ -1.14
CD44-239ENST00000639002 FLCNQ8NFG4 579 aa7.91□□□□□ -1.14
CD44-239ENST00000639002 GAL3ST3Q96A11 431 aa7.91□□□□□ -1.14
CD44-239ENST00000639002 DUSP9Q99956 384 aaKnown RBP7.91□□□□□ -1.14
CD44-239ENST00000639002 EIF4BP23588 611 aaKnown RBP7.9□□□□□ -1.14
CD44-239ENST00000639002 CDK8P49336 464 aa7.9□□□□□ -1.14
CD44-239ENST00000639002 LRFN4Q6PJG9 635 aa7.9□□□□□ -1.14
CD44-239ENST00000639002 DNAJC14Q6Y2X3 702 aaPredicted RBP7.9□□□□□ -1.14
CD44-239ENST00000639002 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.9□□□□□ -1.14
CD44-239ENST00000639002 NETO1Q8TDF5 533 aa7.9□□□□□ -1.14
CD44-239ENST00000639002 FANCGO15287 622 aa7.89□□□□□ -1.15
CD44-239ENST00000639002 CYFIP1Q7L576 1253 aa7.89□□□□□ -1.15
CD44-239ENST00000639002 NPAS4Q8IUM7 802 aa7.89□□□□□ -1.15
CD44-239ENST00000639002 TTF2Q9UNY4 1162 aaKnown RBP7.89□□□□□ -1.15
CD44-239ENST00000639002 SLC5A6Q9Y289 635 aa7.89□□□□□ -1.15
CD44-239ENST00000639002 RBAK-RBAKDNI3L0D1 243 aa7.88□□□□□ -1.15
CD44-239ENST00000639002 PAX4O43316 350 aa7.88□□□□□ -1.15
CD44-239ENST00000639002 CD96P40200 585 aa7.88□□□□□ -1.15
CD44-239ENST00000639002 EAPPQ56P03 285 aaPredicted RBP7.88□□□□□ -1.15
CD44-239ENST00000639002 TTBK2Q6IQ55 1244 aa7.88□□□□□ -1.15
CD44-239ENST00000639002 MKNK2Q9HBH9 465 aa7.88□□□□□ -1.15
CD44-239ENST00000639002 CD8BP10966 210 aa7.87□□□□□ -1.15
CD44-239ENST00000639002 PLPPR2Q96GM1 343 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms