RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 CCDC6Q16204 474 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 DCAF17Q5H9S7 520 aaPredicted RBP6.86□□□□□ -1.31
SCN1A-217ENST00000637988 TAOK1Q7L7X3 1001 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 ANKRD35Q8N283 1001 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 TRIML1Q8N9V2 468 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 CABLES1Q8TDN4 633 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 NAP1L3Q99457 506 aaPredicted RBP6.86□□□□□ -1.31
SCN1A-217ENST00000637988 KRT33BQ14525 404 aa6.85□□□□□ -1.31
SCN1A-217ENST00000637988 FAM160B1Q5W0V3 765 aa6.85□□□□□ -1.31
SCN1A-217ENST00000637988 PPFIBP2Q8ND30 876 aa6.85□□□□□ -1.31
SCN1A-217ENST00000637988 WDR46O15213 610 aaKnown RBP6.85□□□□□ -1.31
SCN1A-217ENST00000637988 CCNT1O60563 726 aaKnown RBP6.85□□□□□ -1.31
SCN1A-217ENST00000637988 FASTKD5Q7L8L6 764 aaKnown RBP6.85□□□□□ -1.31
SCN1A-217ENST00000637988 FCHSD1Q86WN1 690 aa6.85□□□□□ -1.31
SCN1A-217ENST00000637988 METTL23Q86XA0 190 aa6.85□□□□□ -1.31
SCN1A-217ENST00000637988 TTLL3Q9Y4R7 772 aa6.85□□□□□ -1.31
SCN1A-217ENST00000637988 KLF18A0A0U1RQI7 1052 aa6.85□□□□□ -1.31
SCN1A-217ENST00000637988 NUCB1Q02818 461 aa6.85□□□□□ -1.31
SCN1A-217ENST00000637988 DALRD3Q5D0E6 543 aaKnown RBP6.85□□□□□ -1.31
SCN1A-217ENST00000637988 RETREG2Q8NC44 543 aa6.85□□□□□ -1.31
SCN1A-217ENST00000637988 MIS12Q9H081 205 aa6.85□□□□□ -1.31
SCN1A-217ENST00000637988 MTIF3Q9H2K0 278 aaKnown RBP6.85□□□□□ -1.31
SCN1A-217ENST00000637988 DDX19AQ9NUU7 478 aaKnown RBP6.85□□□□□ -1.31
SCN1A-217ENST00000637988 ERCC5P28715 1186 aaPredicted RBP6.85□□□□□ -1.31
SCN1A-217ENST00000637988 CCDC129Q6ZRS4 1044 aa6.85□□□□□ -1.31
SCN1A-217ENST00000637988 SV2BQ7L1I2 683 aa6.85□□□□□ -1.31
SCN1A-217ENST00000637988 CHST3Q7LGC8 479 aa6.85□□□□□ -1.31
SCN1A-217ENST00000637988 TTC1Q99614 292 aa6.85□□□□□ -1.31
SCN1A-217ENST00000637988 ANKFY1Q9P2R3 1169 aa6.85□□□□□ -1.31
SCN1A-217ENST00000637988 SLC12A2P55011 1212 aa6.85□□□□□ -1.31
SCN1A-217ENST00000637988 TCP10Q12799 353 aa6.85□□□□□ -1.31
SCN1A-217ENST00000637988 MCTP2Q6DN12 878 aa6.85□□□□□ -1.31
SCN1A-217ENST00000637988 C4orf50Q6ZRC1 276 aa6.85□□□□□ -1.31
SCN1A-217ENST00000637988 KIF21AQ7Z4S6 1674 aa6.85□□□□□ -1.31
SCN1A-217ENST00000637988 RUSC2Q8N2Y8 1516 aa6.85□□□□□ -1.31
SCN1A-217ENST00000637988 ANKRD36BQ8N2N9 1353 aa6.85□□□□□ -1.31
SCN1A-217ENST00000637988 F6X3S4 739 aa6.85□□□□□ -1.31
SCN1A-217ENST00000637988 H0YCG3 227 aa6.85□□□□□ -1.31
SCN1A-217ENST00000637988 ELF1P32519 619 aa6.85□□□□□ -1.31
SCN1A-217ENST00000637988 MCM7P33993 719 aa6.85□□□□□ -1.31
SCN1A-217ENST00000637988 AFMP43652 599 aa6.85□□□□□ -1.31
SCN1A-217ENST00000637988 CLUL1Q15846 466 aa6.85□□□□□ -1.31
SCN1A-217ENST00000637988 NUDT18Q6ZVK8 323 aa6.85□□□□□ -1.31
SCN1A-217ENST00000637988 PDZD4Q76G19 769 aaPredicted RBP6.85□□□□□ -1.31
SCN1A-217ENST00000637988 PALM2Q8IXS6 379 aa6.85□□□□□ -1.31
SCN1A-217ENST00000637988 LEO1Q8WVC0 666 aaPredicted RBP6.85□□□□□ -1.31
SCN1A-217ENST00000637988 SLC12A6Q9UHW9 1150 aa6.85□□□□□ -1.31
SCN1A-217ENST00000637988 PBRM1Q86U86 1689 aa6.85□□□□□ -1.31
SCN1A-217ENST00000637988 TRIM75PA6NK02 468 aa6.84□□□□□ -1.31
SCN1A-217ENST00000637988 KCTD2Q14681 263 aa6.84□□□□□ -1.31
SCN1A-217ENST00000637988 PPP1R21Q6ZMI0 780 aa6.84□□□□□ -1.31
SCN1A-217ENST00000637988 SKA2Q8WVK7 121 aaPredicted RBP6.84□□□□□ -1.31
SCN1A-217ENST00000637988 IWS1Q96ST2 819 aa6.84□□□□□ -1.31
SCN1A-217ENST00000637988 HINFPQ9BQA5 517 aa6.84□□□□□ -1.31
SCN1A-217ENST00000637988 CNPY2Q9Y2B0 182 aa6.84□□□□□ -1.31
SCN1A-217ENST00000637988 A2MP01023 1474 aa6.84□□□□□ -1.31
SCN1A-217ENST00000637988 M0R2C6 588 aa6.84□□□□□ -1.31
SCN1A-217ENST00000637988 ATP5DP30049 168 aa6.84□□□□□ -1.31
SCN1A-217ENST00000637988 KSR2Q6VAB6 950 aa6.84□□□□□ -1.31
SCN1A-217ENST00000637988 ZNF215Q9UL58 517 aaPredicted RBP6.84□□□□□ -1.31
SCN1A-217ENST00000637988 JAG2Q9Y219 1238 aa6.84□□□□□ -1.31
SCN1A-217ENST00000637988 SCAF11Q99590 1463 aaKnown RBP6.84□□□□□ -1.31
SCN1A-217ENST00000637988 NLGN1Q8N2Q7 840 aa6.84□□□□□ -1.31
SCN1A-217ENST00000637988 MIGA1Q8NAN2 632 aa6.84□□□□□ -1.31
SCN1A-217ENST00000637988 ZKSCAN3Q9BRR0 538 aa6.84□□□□□ -1.31
SCN1A-217ENST00000637988 MTRF1LQ9UGC7 380 aaKnown RBP6.84□□□□□ -1.31
SCN1A-217ENST00000637988 ALDH1L1O75891 902 aa6.84□□□□□ -1.31
SCN1A-217ENST00000637988 FMNL1O95466 1100 aaPredicted RBP6.84□□□□□ -1.31
SCN1A-217ENST00000637988 VWA3BQ502W6 1294 aa6.84□□□□□ -1.31
SCN1A-217ENST00000637988 BBS5Q8N3I7 341 aa6.84□□□□□ -1.31
SCN1A-217ENST00000637988 ADD3Q9UEY8 706 aaKnown RBP6.84□□□□□ -1.31
SCN1A-217ENST00000637988 MYO5CQ9NQX4 1742 aa6.84□□□□□ -1.31
SCN1A-217ENST00000637988 SMARCA5O60264 1052 aaPredicted RBP6.84□□□□□ -1.31
SCN1A-217ENST00000637988 PDE8AO60658 829 aa6.84□□□□□ -1.31
SCN1A-217ENST00000637988 USH1GQ495M9 461 aa6.84□□□□□ -1.31
SCN1A-217ENST00000637988 LMBR1LQ6UX01 489 aa6.84□□□□□ -1.31
SCN1A-217ENST00000637988 NSMFQ6X4W1 530 aa6.84□□□□□ -1.31
SCN1A-217ENST00000637988 FERMT3Q86UX7 667 aa6.84□□□□□ -1.31
SCN1A-217ENST00000637988 FTOQ9C0B1 505 aaKnown RBP eCLIP6.84□□□□□ -1.31
SCN1A-217ENST00000637988 KCNH4Q9UQ05 1017 aa6.84□□□□□ -1.31
SCN1A-217ENST00000637988 EMILIN1Q9Y6C2 1016 aa6.84□□□□□ -1.31
SCN1A-217ENST00000637988 NPATQ14207 1427 aa6.84□□□□□ -1.32
SCN1A-217ENST00000637988 PRPF38AQ8NAV1 312 aaKnown RBP6.84□□□□□ -1.32
SCN1A-217ENST00000637988 COA7Q96BR5 231 aa6.84□□□□□ -1.32
SCN1A-217ENST00000637988 SH3TC1Q8TE82 1336 aa6.83□□□□□ -1.32
SCN1A-217ENST00000637988 DEPTORQ8TB45 409 aa6.83□□□□□ -1.32
SCN1A-217ENST00000637988 ANAPC5Q9UJX4 755 aa6.83□□□□□ -1.32
SCN1A-217ENST00000637988 PCF11O94913 1555 aaKnown RBP6.83□□□□□ -1.32
SCN1A-217ENST00000637988 RARSP54136 660 aaKnown RBP6.83□□□□□ -1.32
SCN1A-217ENST00000637988 N4BP2L2Q92802 583 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-217ENST00000637988 HAUS1Q96CS2 278 aa6.83□□□□□ -1.32
SCN1A-217ENST00000637988 TACC1O75410 805 aa6.83□□□□□ -1.32
SCN1A-217ENST00000637988 PLCD1P51178 756 aa6.83□□□□□ -1.32
SCN1A-217ENST00000637988 KRT83P78385 493 aa6.83□□□□□ -1.32
SCN1A-217ENST00000637988 CNNM4Q6P4Q7 775 aa6.83□□□□□ -1.32
SCN1A-217ENST00000637988 UBL4BQ8N7F7 174 aa6.83□□□□□ -1.32
SCN1A-217ENST00000637988 SLC7A5P2Q9GIP4 190 aa6.83□□□□□ -1.32
SCN1A-217ENST00000637988 SLAIN2Q9P270 581 aa6.83□□□□□ -1.32
SCN1A-217ENST00000637988 MAP3K5Q99683 1374 aa6.83□□□□□ -1.32
SCN1A-217ENST00000637988 DDX39AO00148 427 aaKnown RBP6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms