RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 TCP10Q12799 353 aa20.61■□□□□ 0.89
CLN3-264ENST00000637985 ZHX2Q9Y6X8 837 aa20.61■□□□□ 0.89
CLN3-264ENST00000637985 DDX60LQ5H9U9 1706 aaKnown RBP20.61■□□□□ 0.89
CLN3-264ENST00000637985 CACNA1FO60840 1977 aa20.61■□□□□ 0.89
CLN3-264ENST00000637985 MROH5Q6ZUA9 1318 aa20.6■□□□□ 0.89
CLN3-264ENST00000637985 HMGCRP04035 888 aa20.6■□□□□ 0.89
CLN3-264ENST00000637985 CAVIN4Q5BKX8 364 aa20.6■□□□□ 0.89
CLN3-264ENST00000637985 SMCR8Q8TEV9 937 aaPredicted RBP20.6■□□□□ 0.89
CLN3-264ENST00000637985 AFG3L2Q9Y4W6 797 aa20.6■□□□□ 0.89
CLN3-264ENST00000637985 PRUNE2Q8WUY3 3088 aa20.6■□□□□ 0.89
CLN3-264ENST00000637985 IL16Q14005 1332 aa20.59■□□□□ 0.89
CLN3-264ENST00000637985 PHF20L1A8MW92 1017 aa20.59■□□□□ 0.89
CLN3-264ENST00000637985 GRM8O00222 908 aa20.59■□□□□ 0.89
CLN3-264ENST00000637985 PTPRAP18433 802 aa20.59■□□□□ 0.89
CLN3-264ENST00000637985 NFIAQ12857 509 aa20.59■□□□□ 0.89
CLN3-264ENST00000637985 HMX1Q9NP08 348 aaPredicted RBP20.59■□□□□ 0.89
CLN3-264ENST00000637985 OGDHLQ9ULD0 1010 aa20.59■□□□□ 0.89
CLN3-264ENST00000637985 PTPRFP10586 1907 aa20.59■□□□□ 0.89
CLN3-264ENST00000637985 CDC42EP5Q6NZY7 148 aa20.58■□□□□ 0.89
CLN3-264ENST00000637985 GADL1Q6ZQY3 521 aa20.58■□□□□ 0.89
CLN3-264ENST00000637985 SCYL3Q8IZE3 742 aa20.58■□□□□ 0.89
CLN3-264ENST00000637985 ANKRD13CQ8N6S4 541 aa20.58■□□□□ 0.89
CLN3-264ENST00000637985 COL2A1P02458 1487 aaPredicted RBP20.57■□□□□ 0.88
CLN3-264ENST00000637985 F6X3S4 739 aa20.57■□□□□ 0.88
CLN3-264ENST00000637985 PICK1Q9NRD5 415 aa20.57■□□□□ 0.88
CLN3-264ENST00000637985 FAM198AQ9UFP1 575 aa20.57■□□□□ 0.88
CLN3-264ENST00000637985 ATRNL1Q5VV63 1379 aa20.57■□□□□ 0.88
CLN3-264ENST00000637985 PFASO15067 1338 aa20.56■□□□□ 0.88
CLN3-264ENST00000637985 TRIM32Q13049 653 aa20.56■□□□□ 0.88
CLN3-264ENST00000637985 FAM110CQ1W6H9 321 aa20.56■□□□□ 0.88
CLN3-264ENST00000637985 GJD2Q9UKL4 321 aa20.56■□□□□ 0.88
CLN3-264ENST00000637985 DAGLAQ9Y4D2 1042 aa20.56■□□□□ 0.88
CLN3-264ENST00000637985 TTC28Q96AY4 2481 aa20.56■□□□□ 0.88
CLN3-264ENST00000637985 ZFPM1Q8IX07 1006 aa20.55■□□□□ 0.88
CLN3-264ENST00000637985 VGLL2Q8N8G2 317 aa20.55■□□□□ 0.88
CLN3-264ENST00000637985 PDE8BO95263 885 aa20.54■□□□□ 0.88
CLN3-264ENST00000637985 WDR63Q8IWG1 891 aa20.54■□□□□ 0.88
CLN3-264ENST00000637985 KAZALD1Q96I82 304 aa20.54■□□□□ 0.88
CLN3-264ENST00000637985 FAM161BQ96MY7 647 aa20.54■□□□□ 0.88
CLN3-264ENST00000637985 AGTPBP1Q9UPW5 1226 aa20.54■□□□□ 0.88
CLN3-264ENST00000637985 PHIPQ8WWQ0 1821 aa20.53■□□□□ 0.88
CLN3-264ENST00000637985 COL6A1P12109 1028 aa20.53■□□□□ 0.88
CLN3-264ENST00000637985 MDM2Q00987 491 aaPredicted RBP20.53■□□□□ 0.88
CLN3-264ENST00000637985 MAP3K10Q02779 954 aa20.53■□□□□ 0.88
CLN3-264ENST00000637985 C9orf78Q9NZ63 289 aaPredicted RBP20.53■□□□□ 0.88
CLN3-264ENST00000637985 MUC3AQ02505 3323 aa20.52■□□□□ 0.88
CLN3-264ENST00000637985 DIXDC1Q155Q3 683 aa20.52■□□□□ 0.88
CLN3-264ENST00000637985 LRRC24Q50LG9 513 aa20.52■□□□□ 0.88
CLN3-264ENST00000637985 METTL24Q5JXM2 366 aa20.52■□□□□ 0.88
CLN3-264ENST00000637985 MAP3K21Q5TCX8 1036 aa20.52■□□□□ 0.88
CLN3-264ENST00000637985 KIF16BQ96L93 1317 aa20.52■□□□□ 0.87
CLN3-264ENST00000637985 DNAH12Q6ZR08 3092 aa20.51■□□□□ 0.87
CLN3-264ENST00000637985 TRIM75PA6NK02 468 aa20.51■□□□□ 0.87
CLN3-264ENST00000637985 TREML2Q5T2D2 321 aa20.51■□□□□ 0.87
CLN3-264ENST00000637985 WDR66Q8TBY9 1149 aa20.51■□□□□ 0.87
CLN3-264ENST00000637985 USP40Q9NVE5 1235 aa20.51■□□□□ 0.87
CLN3-264ENST00000637985 PNMA3Q9UL41 463 aa20.51■□□□□ 0.87
CLN3-264ENST00000637985 DOCK2Q92608 1830 aa20.5■□□□□ 0.87
CLN3-264ENST00000637985 CTNND1O60716 968 aaKnown RBP20.5■□□□□ 0.87
CLN3-264ENST00000637985 VAMP4O75379 141 aa20.5■□□□□ 0.87
CLN3-264ENST00000637985 LRRC26Q2I0M4 334 aa20.5■□□□□ 0.87
CLN3-264ENST00000637985 ZNF697Q5TEC3 545 aa20.5■□□□□ 0.87
CLN3-264ENST00000637985 TRIB2Q92519 343 aa20.5■□□□□ 0.87
CLN3-264ENST00000637985 SUCLG2Q96I99 432 aa20.5■□□□□ 0.87
CLN3-264ENST00000637985 CDX2Q99626 313 aaPredicted RBP20.5■□□□□ 0.87
CLN3-264ENST00000637985 PLXNB2O15031 1838 aa20.49■□□□□ 0.87
CLN3-264ENST00000637985 ALDH1L1O75891 902 aa20.49■□□□□ 0.87
CLN3-264ENST00000637985 GCLCP48506 637 aaPredicted RBP20.49■□□□□ 0.87
CLN3-264ENST00000637985 LRRFIP2Q9Y608 721 aaKnown RBP20.49■□□□□ 0.87
CLN3-264ENST00000637985 DOCK1Q14185 1865 aa20.49■□□□□ 0.87
CLN3-264ENST00000637985 FANCIQ9NVI1 1328 aa20.49■□□□□ 0.87
CLN3-264ENST00000637985 FGFR2P21802 821 aa20.48■□□□□ 0.87
CLN3-264ENST00000637985 SH3BP5LQ7L8J4 393 aa20.48■□□□□ 0.87
CLN3-264ENST00000637985 MAFAQ8NHW3 353 aaPredicted RBP20.48■□□□□ 0.87
CLN3-264ENST00000637985 IDI2Q9BXS1 227 aa20.48■□□□□ 0.87
CLN3-264ENST00000637985 SALL2Q9Y467 1007 aaPredicted RBP20.48■□□□□ 0.87
CLN3-264ENST00000637985 CDH23Q9H251 3354 aa20.48■□□□□ 0.87
CLN3-264ENST00000637985 ENTPD3O75355 529 aa20.47■□□□□ 0.87
CLN3-264ENST00000637985 IFIT1P09914 478 aaKnown RBP20.47■□□□□ 0.87
CLN3-264ENST00000637985 PRKAR2AP13861 404 aaKnown RBP20.47■□□□□ 0.87
CLN3-264ENST00000637985 RGS3P49796 1198 aa20.47■□□□□ 0.87
CLN3-264ENST00000637985 RABL6Q3YEC7 729 aaPredicted RBP20.47■□□□□ 0.87
CLN3-264ENST00000637985 FAM9BQ8IZU0 186 aa20.47■□□□□ 0.87
CLN3-264ENST00000637985 PROCA1Q8NCQ7 364 aaPredicted RBP20.47■□□□□ 0.87
CLN3-264ENST00000637985 SPINK5Q9NQ38 1064 aaPredicted RBP20.47■□□□□ 0.87
CLN3-264ENST00000637985 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.47■□□□□ 0.87
CLN3-264ENST00000637985 MYH13Q9UKX3 1938 aa20.47■□□□□ 0.87
CLN3-264ENST00000637985 SLURP2P0DP57 97 aa20.46■□□□□ 0.87
CLN3-264ENST00000637985 PRDX5P30044 214 aa20.46■□□□□ 0.87
CLN3-264ENST00000637985 PUM3Q15397 648 aaKnown RBP20.46■□□□□ 0.87
CLN3-264ENST00000637985 CCDC84Q86UT8 332 aaPredicted RBP20.46■□□□□ 0.87
CLN3-264ENST00000637985 NBPF7P0C2Y1 421 aaPredicted RBP20.45■□□□□ 0.86
CLN3-264ENST00000637985 COL9A1P20849 921 aa20.45■□□□□ 0.86
CLN3-264ENST00000637985 LHX8Q68G74 356 aa20.45■□□□□ 0.86
CLN3-264ENST00000637985 SYMPKQ92797 1274 aaKnown RBP20.45■□□□□ 0.86
CLN3-264ENST00000637985 SEMA6BQ9H3T3 888 aa20.45■□□□□ 0.86
CLN3-264ENST00000637985 BICC1Q9H694 974 aaKnown RBP20.45■□□□□ 0.86
CLN3-264ENST00000637985 RFX7Q2KHR2 1363 aa20.45■□□□□ 0.86
CLN3-264ENST00000637985 DDTLA6NHG4 134 aaPredicted RBP20.44■□□□□ 0.86
CLN3-264ENST00000637985 XRCC5P13010 732 aaKnown RBP20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms