RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	USP17L12	C9JPN9	530 aa		13.93	□□□□□ -0.18
CLN6-223	ENST00000637823	USP17L21	D6R901	530 aa		13.93	□□□□□ -0.18
CLN6-223	ENST00000637823	PC	P11498	1178 aa	Known RBP	13.93	□□□□□ -0.18
CLN6-223	ENST00000637823	MCM5	P33992	734 aa		13.93	□□□□□ -0.18
CLN6-223	ENST00000637823	CTDSPL2	Q05D32	466 aa		13.93	□□□□□ -0.18
CLN6-223	ENST00000637823	CIAPIN1	Q6FI81	312 aa		13.93	□□□□□ -0.18
CLN6-223	ENST00000637823	RALYL	Q86SE5	291 aa	Known RBP	13.93	□□□□□ -0.18
CLN6-223	ENST00000637823	TBC1D10C	Q8IV04	446 aa		13.93	□□□□□ -0.18
CLN6-223	ENST00000637823	AMOTL1	Q8IY63	956 aa		13.93	□□□□□ -0.18
CLN6-223	ENST00000637823	TGFBRAP1	Q8WUH2	860 aa		13.93	□□□□□ -0.18
CLN6-223	ENST00000637823	STAG1	Q8WVM7	1258 aa		13.93	□□□□□ -0.18
CLN6-223	ENST00000637823	ZSCAN31	Q96LW9	406 aa	Predicted RBP	13.93	□□□□□ -0.18
CLN6-223	ENST00000637823	KRT23	Q9C075	422 aa		13.93	□□□□□ -0.18
CLN6-223	ENST00000637823	USP40	Q9NVE5	1235 aa		13.93	□□□□□ -0.18
CLN6-223	ENST00000637823	ARPP21	Q9UBL0	812 aa	Predicted RBP	13.93	□□□□□ -0.18
CLN6-223	ENST00000637823	HDAC9	Q9UKV0	1011 aa		13.93	□□□□□ -0.18
CLN6-223	ENST00000637823	SLC3A2	P08195	630 aa	Known RBP	13.92	□□□□□ -0.18
CLN6-223	ENST00000637823	KCNA4	P22459	653 aa		13.92	□□□□□ -0.18
CLN6-223	ENST00000637823	RASSF7	Q02833	373 aa		13.92	□□□□□ -0.18
CLN6-223	ENST00000637823	APOBEC3H	Q6NTF7	200 aa	Known RBP	13.92	□□□□□ -0.18
CLN6-223	ENST00000637823	CDC42EP5	Q6NZY7	148 aa		13.92	□□□□□ -0.18
CLN6-223	ENST00000637823	MB21D2	Q8IYB1	491 aa	Predicted RBP	13.92	□□□□□ -0.18
CLN6-223	ENST00000637823	FBXL16	Q8N461	479 aa		13.92	□□□□□ -0.18
CLN6-223	ENST00000637823	TMX3	Q96JJ7	454 aa		13.92	□□□□□ -0.18
CLN6-223	ENST00000637823	MCM9	Q9NXL9	1143 aa		13.92	□□□□□ -0.18
CLN6-223	ENST00000637823	FZD9	O00144	591 aa		13.91	□□□□□ -0.18
CLN6-223	ENST00000637823	HSP90AA1	P07900	732 aa	Known RBP	13.91	□□□□□ -0.18
CLN6-223	ENST00000637823	FGR	P09769	529 aa		13.91	□□□□□ -0.18
CLN6-223	ENST00000637823	RBM5	P52756	815 aa	Known RBP eCLIP	13.91	□□□□□ -0.18
CLN6-223	ENST00000637823	EIF6	P56537	245 aa	Known RBP	13.91	□□□□□ -0.18
CLN6-223	ENST00000637823	COL9A3	Q14050	684 aa	Predicted RBP	13.91	□□□□□ -0.18
CLN6-223	ENST00000637823	TOB2	Q14106	344 aa	Predicted RBP	13.91	□□□□□ -0.18
CLN6-223	ENST00000637823	C12orf60	Q5U649	245 aa		13.91	□□□□□ -0.18
CLN6-223	ENST00000637823		Q6ZUG5	572 aa		13.91	□□□□□ -0.18
CLN6-223	ENST00000637823	OGFOD1	Q8N543	542 aa		13.91	□□□□□ -0.18
CLN6-223	ENST00000637823	DDX60L	Q5H9U9	1706 aa	Known RBP	13.9	□□□□□ -0.18
CLN6-223	ENST00000637823	CYP2D7	A0A087X1C5	515 aa		13.9	□□□□□ -0.18
CLN6-223	ENST00000637823	PRC1	O43663	620 aa		13.9	□□□□□ -0.18
CLN6-223	ENST00000637823	USP17L8	P0C7I0	530 aa		13.9	□□□□□ -0.18
CLN6-223	ENST00000637823	LMNB1	P20700	586 aa		13.9	□□□□□ -0.18
CLN6-223	ENST00000637823	RPS12	P25398	132 aa	Known RBP	13.9	□□□□□ -0.18
CLN6-223	ENST00000637823	NT5C2	P49902	561 aa		13.9	□□□□□ -0.18
CLN6-223	ENST00000637823	PRELP	P51888	382 aa		13.9	□□□□□ -0.18
CLN6-223	ENST00000637823	FGD1	P98174	961 aa		13.9	□□□□□ -0.18
CLN6-223	ENST00000637823	CUL4A	Q13619	759 aa		13.9	□□□□□ -0.18
CLN6-223	ENST00000637823	CFAP100	Q494V2	611 aa		13.9	□□□□□ -0.18
CLN6-223	ENST00000637823	MAPKAPK5	Q8IW41	473 aa		13.9	□□□□□ -0.18
CLN6-223	ENST00000637823	TCEANC2	Q96MN5	208 aa		13.9	□□□□□ -0.18
CLN6-223	ENST00000637823	AGXT2	Q9BYV1	514 aa		13.9	□□□□□ -0.18
CLN6-223	ENST00000637823	SH2B1	Q9NRF2	756 aa	Predicted RBP	13.9	□□□□□ -0.18
CLN6-223	ENST00000637823	TACC3	Q9Y6A5	838 aa		13.9	□□□□□ -0.18
CLN6-223	ENST00000637823	FLT1	P17948	1338 aa		13.9	□□□□□ -0.19
CLN6-223	ENST00000637823		B4E1Z4	1266 aa		13.89	□□□□□ -0.19
CLN6-223	ENST00000637823	NPM3	O75607	178 aa	Known RBP	13.89	□□□□□ -0.19
CLN6-223	ENST00000637823	WDHD1	O75717	1129 aa	Predicted RBP	13.89	□□□□□ -0.19
CLN6-223	ENST00000637823	POLR3D	P05423	398 aa	Predicted RBP	13.89	□□□□□ -0.19
CLN6-223	ENST00000637823	PDE4B	Q07343	736 aa		13.89	□□□□□ -0.19
CLN6-223	ENST00000637823	NOL8	Q76FK4	1167 aa	Known RBP	13.89	□□□□□ -0.19
CLN6-223	ENST00000637823	MTMR14	Q8NCE2	650 aa		13.89	□□□□□ -0.19
CLN6-223	ENST00000637823	SPRYD3	Q8NCJ5	442 aa		13.89	□□□□□ -0.19
CLN6-223	ENST00000637823	MTA3	Q9BTC8	594 aa		13.89	□□□□□ -0.19
CLN6-223	ENST00000637823	INCENP	Q9NQS7	918 aa		13.89	□□□□□ -0.19
CLN6-223	ENST00000637823	ZSWIM5	Q9P217	1185 aa		13.89	□□□□□ -0.19
CLN6-223	ENST00000637823	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.89	□□□□□ -0.19
CLN6-223	ENST00000637823	MYH8	P13535	1937 aa		13.89	□□□□□ -0.19
CLN6-223	ENST00000637823	NEDD4	P46934	1319 aa		13.89	□□□□□ -0.19
CLN6-223	ENST00000637823	ORC4	O43929	436 aa		13.88	□□□□□ -0.19
CLN6-223	ENST00000637823	CYP2D6	P10635	497 aa		13.88	□□□□□ -0.19
CLN6-223	ENST00000637823	ANTXR2	P58335	489 aa		13.88	□□□□□ -0.19
CLN6-223	ENST00000637823	DLGAP5	Q15398	846 aa		13.88	□□□□□ -0.19
CLN6-223	ENST00000637823	CYB5R4	Q7L1T6	521 aa		13.88	□□□□□ -0.19
CLN6-223	ENST00000637823	CHST3	Q7LGC8	479 aa		13.88	□□□□□ -0.19
CLN6-223	ENST00000637823	ESR2	Q92731	530 aa		13.88	□□□□□ -0.19
CLN6-223	ENST00000637823	DPF2	Q92785	391 aa		13.88	□□□□□ -0.19
CLN6-223	ENST00000637823	INTS4	Q96HW7	963 aa	Known RBP	13.88	□□□□□ -0.19
CLN6-223	ENST00000637823	TMEM87B	Q96K49	555 aa		13.88	□□□□□ -0.19
CLN6-223	ENST00000637823	LARP6	Q9BRS8	491 aa	Known RBP	13.88	□□□□□ -0.19
CLN6-223	ENST00000637823	IDI2	Q9BXS1	227 aa		13.88	□□□□□ -0.19
CLN6-223	ENST00000637823	TOMM22	Q9NS69	142 aa		13.88	□□□□□ -0.19
CLN6-223	ENST00000637823	SAP30BP	Q9UHR5	308 aa	Known RBP	13.88	□□□□□ -0.19
CLN6-223	ENST00000637823	TPCN1	Q9ULQ1	816 aa		13.88	□□□□□ -0.19
CLN6-223	ENST00000637823	ROBO3	Q96MS0	1386 aa		13.87	□□□□□ -0.19
CLN6-223	ENST00000637823	KDM4A	O75164	1064 aa		13.87	□□□□□ -0.19
CLN6-223	ENST00000637823	EVC	P57679	992 aa		13.87	□□□□□ -0.19
CLN6-223	ENST00000637823	RRP12	Q5JTH9	1297 aa	Known RBP	13.87	□□□□□ -0.19
CLN6-223	ENST00000637823	TTC6	Q86TZ1	520 aa		13.87	□□□□□ -0.19
CLN6-223	ENST00000637823	BRF1	Q92994	677 aa		13.87	□□□□□ -0.19
CLN6-223	ENST00000637823	ZNF274	Q96GC6	653 aa	Predicted RBP	13.87	□□□□□ -0.19
CLN6-223	ENST00000637823	PRMT6	Q96LA8	375 aa	Predicted RBP	13.87	□□□□□ -0.19
CLN6-223	ENST00000637823	LRRC2	Q9BYS8	371 aa		13.87	□□□□□ -0.19
CLN6-223	ENST00000637823	ZNF287	Q9HBT7	754 aa		13.87	□□□□□ -0.19
CLN6-223	ENST00000637823	CWC22	Q9HCG8	908 aa	Known RBP	13.87	□□□□□ -0.19
CLN6-223	ENST00000637823	DDX4	Q9NQI0	724 aa	Known RBP	13.87	□□□□□ -0.19
CLN6-223	ENST00000637823	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	13.87	□□□□□ -0.19	7e-6	■■■■■ 33.6
CLN6-223	ENST00000637823	PCDHAC2	Q9Y5I4	1007 aa		13.87	□□□□□ -0.19
CLN6-223	ENST00000637823	SPDYE2B	A6NHP3	402 aa		13.86	□□□□□ -0.19
CLN6-223	ENST00000637823	SMIM22	K7EJ46	135 aa		13.86	□□□□□ -0.19
CLN6-223	ENST00000637823	SPDYE6	P0CI01	402 aa		13.86	□□□□□ -0.19
CLN6-223	ENST00000637823	YBX3	P16989	372 aa	Known RBP eCLIP	13.86	□□□□□ -0.19	1e-7	■■□□□ 13.8
CLN6-223	ENST00000637823	PLCD1	P51178	756 aa		13.86	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms