RNA–Protein interactions for RNA: ENST00000637184.1

CLN3-258, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,753 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-258ENST00000637184 MAPKAPK5Q8IW41 473 aa22.55■■□□□ 1.2
CLN3-258ENST00000637184 NCOA7Q8NI08 942 aa22.55■■□□□ 1.2
CLN3-258ENST00000637184 ANAPC4Q9UJX5 808 aa22.55■■□□□ 1.2
CLN3-258ENST00000637184 NAV1Q8NEY1 1877 aa22.55■■□□□ 1.2
CLN3-258ENST00000637184 SBF1O95248 1867 aa22.54■■□□□ 1.2
CLN3-258ENST00000637184 SBK1Q52WX2 424 aa22.54■■□□□ 1.2
CLN3-258ENST00000637184 DHX32Q7L7V1 743 aaKnown RBP22.54■■□□□ 1.2
CLN3-258ENST00000637184 FOCADQ5VW36 1801 aa22.54■■□□□ 1.2
CLN3-258ENST00000637184 USP17L8P0C7I0 530 aa22.53■■□□□ 1.2
CLN3-258ENST00000637184 AK2P54819 239 aa22.53■■□□□ 1.2
CLN3-258ENST00000637184 COL9A3Q14050 684 aaPredicted RBP22.53■■□□□ 1.2
CLN3-258ENST00000637184 CFAP100Q494V2 611 aa22.53■■□□□ 1.2
CLN3-258ENST00000637184 AKNAD1Q5T1N1 836 aa22.53■■□□□ 1.2
CLN3-258ENST00000637184 CDC42EP5Q6NZY7 148 aa22.53■■□□□ 1.2
CLN3-258ENST00000637184 AMOTL1Q8IY63 956 aa22.53■■□□□ 1.2
CLN3-258ENST00000637184 TIAM2Q8IVF5 1701 aa22.53■■□□□ 1.2
CLN3-258ENST00000637184 ECM29Q5VYK3 1845 aa22.53■■□□□ 1.2
CLN3-258ENST00000637184 LAMB1P07942 1786 aa22.53■■□□□ 1.2
CLN3-258ENST00000637184 MFSD6Q6ZSS7 791 aa22.53■■□□□ 1.2
CLN3-258ENST00000637184 STAG1Q8WVM7 1258 aa22.53■■□□□ 1.2
CLN3-258ENST00000637184 RNF41Q9H4P4 317 aaPredicted RBP22.53■■□□□ 1.2
CLN3-258ENST00000637184 FLT1P17948 1338 aa22.52■■□□□ 1.2
CLN3-258ENST00000637184 CYP2D7A0A087X1C5 515 aa22.52■■□□□ 1.2
CLN3-258ENST00000637184 RPS12P25398 132 aaKnown RBP22.52■■□□□ 1.2
CLN3-258ENST00000637184 TCEANC2Q96MN5 208 aa22.52■■□□□ 1.2
CLN3-258ENST00000637184 CNNM2Q9H8M5 875 aa22.52■■□□□ 1.2
CLN3-258ENST00000637184 PCDHAC2Q9Y5I4 1007 aa22.52■■□□□ 1.2
CLN3-258ENST00000637184 ALDH8A1Q9H2A2 487 aaPredicted RBP22.51■■□□□ 1.19
CLN3-258ENST00000637184 MYH1P12882 1939 aa22.51■■□□□ 1.19
CLN3-258ENST00000637184 WDHD1O75717 1129 aaPredicted RBP22.5■■□□□ 1.19
CLN3-258ENST00000637184 SLC3A2P08195 630 aaKnown RBP22.5■■□□□ 1.19
CLN3-258ENST00000637184 PICALMQ13492 652 aa22.5■■□□□ 1.19
CLN3-258ENST00000637184 ANKRD1Q15327 319 aa22.5■■□□□ 1.19
CLN3-258ENST00000637184 NOL8Q76FK4 1167 aaKnown RBP22.5■■□□□ 1.19
CLN3-258ENST00000637184 STK11IPQ8N1F8 1099 aa22.5■■□□□ 1.19
CLN3-258ENST00000637184 KRT23Q9C075 422 aa22.5■■□□□ 1.19
CLN3-258ENST00000637184 GJA3Q9Y6H8 435 aa22.5■■□□□ 1.19
CLN3-258ENST00000637184 NEDD4P46934 1319 aa22.5■■□□□ 1.19
CLN3-258ENST00000637184 POLR3DP05423 398 aaPredicted RBP22.5■■□□□ 1.19
CLN3-258ENST00000637184 MCM5P33992 734 aa22.5■■□□□ 1.19
CLN3-258ENST00000637184 MMP14P50281 582 aa22.5■■□□□ 1.19
CLN3-258ENST00000637184 EXOSC10Q01780 885 aaKnown RBP22.5■■□□□ 1.19
CLN3-258ENST00000637184 DLGAP5Q15398 846 aa22.5■■□□□ 1.19
CLN3-258ENST00000637184 C12orf60Q5U649 245 aa22.5■■□□□ 1.19
CLN3-258ENST00000637184 MB21D2Q8IYB1 491 aaPredicted RBP22.5■■□□□ 1.19
CLN3-258ENST00000637184 SAP30BPQ9UHR5 308 aaKnown RBP22.5■■□□□ 1.19
CLN3-258ENST00000637184 CYP2D6P10635 497 aa22.49■■□□□ 1.19
CLN3-258ENST00000637184 PCP11498 1178 aaKnown RBP22.49■■□□□ 1.19
CLN3-258ENST00000637184 PRMT6Q96LA8 375 aaPredicted RBP22.49■■□□□ 1.19
CLN3-258ENST00000637184 INCENPQ9NQS7 918 aa22.49■■□□□ 1.19
CLN3-258ENST00000637184 TOMM22Q9NS69 142 aa22.49■■□□□ 1.19
CLN3-258ENST00000637184 B4E1Z4 1266 aa22.48■■□□□ 1.19
CLN3-258ENST00000637184 FGD1P98174 961 aa22.48■■□□□ 1.19
CLN3-258ENST00000637184 GPR162Q16538 588 aa22.48■■□□□ 1.19
CLN3-258ENST00000637184 SLC4A8Q2Y0W8 1093 aa22.48■■□□□ 1.19
CLN3-258ENST00000637184 LIMCH1Q9UPQ0 1083 aa22.48■■□□□ 1.19
CLN3-258ENST00000637184 DDX60LQ5H9U9 1706 aaKnown RBP22.48■■□□□ 1.19
CLN3-258ENST00000637184 ZNF541Q9H0D2 1346 aa22.48■■□□□ 1.19
CLN3-258ENST00000637184 SPDYE2BA6NHP3 402 aa22.48■■□□□ 1.19
CLN3-258ENST00000637184 SMIM22K7EJ46 135 aa22.48■■□□□ 1.19
CLN3-258ENST00000637184 SPDYE6P0CI01 402 aa22.48■■□□□ 1.19
CLN3-258ENST00000637184 RRP12Q5JTH9 1297 aaKnown RBP22.48■■□□□ 1.19
CLN3-258ENST00000637184 Q6ZUG5 572 aa22.48■■□□□ 1.19
CLN3-258ENST00000637184 CHST3Q7LGC8 479 aa22.48■■□□□ 1.19
CLN3-258ENST00000637184 TDRD3Q9H7E2 651 aaKnown RBP22.48■■□□□ 1.19
CLN3-258ENST00000637184 DDX4Q9NQI0 724 aaKnown RBP22.48■■□□□ 1.19
CLN3-258ENST00000637184 TACC3Q9Y6A5 838 aa22.48■■□□□ 1.19
CLN3-258ENST00000637184 UTRNP46939 3433 aa22.48■■□□□ 1.19
CLN3-258ENST00000637184 PRC1O43663 620 aa22.47■■□□□ 1.19
CLN3-258ENST00000637184 MTMR14Q8NCE2 650 aa22.47■■□□□ 1.19
CLN3-258ENST00000637184 DPF2Q92785 391 aa22.47■■□□□ 1.19
CLN3-258ENST00000637184 TMX3Q96JJ7 454 aa22.47■■□□□ 1.19
CLN3-258ENST00000637184 IDI2Q9BXS1 227 aa22.47■■□□□ 1.19
CLN3-258ENST00000637184 LRRC2Q9BYS8 371 aa22.47■■□□□ 1.19
CLN3-258ENST00000637184 RNF181Q9P0P0 153 aa22.47■■□□□ 1.19
CLN3-258ENST00000637184 WDR19Q8NEZ3 1342 aa22.46■■□□□ 1.19
CLN3-258ENST00000637184 HSP90AA1P07900 732 aaKnown RBP22.46■■□□□ 1.19
CLN3-258ENST00000637184 FGRP09769 529 aa22.46■■□□□ 1.19
CLN3-258ENST00000637184 GMPSP49915 693 aaPredicted RBP22.46■■□□□ 1.19
CLN3-258ENST00000637184 PDE4BQ07343 736 aa22.46■■□□□ 1.19
CLN3-258ENST00000637184 TOB2Q14106 344 aaPredicted RBP22.46■■□□□ 1.19
CLN3-258ENST00000637184 LARP6Q9BRS8 491 aaKnown RBP22.46■■□□□ 1.19
CLN3-258ENST00000637184 OSBPL5Q9H0X9 879 aaPredicted RBP22.46■■□□□ 1.19
CLN3-258ENST00000637184 KDM4AO75164 1064 aa22.45■■□□□ 1.19
CLN3-258ENST00000637184 PLCD1P51178 756 aa22.45■■□□□ 1.19
CLN3-258ENST00000637184 CACNB3P54284 484 aa22.45■■□□□ 1.19
CLN3-258ENST00000637184 EVX2Q03828 476 aa22.45■■□□□ 1.19
CLN3-258ENST00000637184 NFIAQ12857 509 aa22.45■■□□□ 1.19
CLN3-258ENST00000637184 MYOZ2Q9NPC6 264 aa22.45■■□□□ 1.19
CLN3-258ENST00000637184 ANTXR2P58335 489 aa22.45■■□□□ 1.18
CLN3-258ENST00000637184 ZNF280AP59817 542 aaPredicted RBP22.45■■□□□ 1.18
CLN3-258ENST00000637184 CYB5R4Q7L1T6 521 aa22.45■■□□□ 1.18
CLN3-258ENST00000637184 TTC6Q86TZ1 520 aa22.45■■□□□ 1.18
CLN3-258ENST00000637184 GPC2Q8N158 579 aa22.45■■□□□ 1.18
CLN3-258ENST00000637184 SPRYD3Q8NCJ5 442 aa22.45■■□□□ 1.18
CLN3-258ENST00000637184 ESR2Q92731 530 aa22.45■■□□□ 1.18
CLN3-258ENST00000637184 TMOD2Q9NZR1 351 aa22.45■■□□□ 1.18
CLN3-258ENST00000637184 ZSWIM5Q9P217 1185 aa22.45■■□□□ 1.18
CLN3-258ENST00000637184 ROBO3Q96MS0 1386 aa22.45■■□□□ 1.18
CLN3-258ENST00000637184 NPM3O75607 178 aaKnown RBP22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms