RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 LAMB1P07942 1786 aa21.79■■□□□ 1.08
CLN3-254ENST00000637050 CRKP46108 304 aa21.79■■□□□ 1.08
CLN3-254ENST00000637050 MFSD6Q6ZSS7 791 aa21.79■■□□□ 1.08
CLN3-254ENST00000637050 TEX11Q8IYF3 940 aa21.79■■□□□ 1.08
CLN3-254ENST00000637050 TGFBRAP1Q8WUH2 860 aa21.79■■□□□ 1.08
CLN3-254ENST00000637050 ZDHHC15Q96MV8 337 aa21.79■■□□□ 1.08
CLN3-254ENST00000637050 RNF41Q9H4P4 317 aaPredicted RBP21.79■■□□□ 1.08
CLN3-254ENST00000637050 SH2B1Q9NRF2 756 aaPredicted RBP21.79■■□□□ 1.08
CLN3-254ENST00000637050 ADAMTSL1Q8N6G6 1762 aa21.78■■□□□ 1.08
CLN3-254ENST00000637050 PSMD14O00487 310 aa21.78■■□□□ 1.08
CLN3-254ENST00000637050 ANTXR2P58335 489 aa21.78■■□□□ 1.08
CLN3-254ENST00000637050 RSBN1LQ6PCB5 846 aaPredicted RBP21.78■■□□□ 1.08
CLN3-254ENST00000637050 INTS4Q96HW7 963 aaKnown RBP21.78■■□□□ 1.08
CLN3-254ENST00000637050 KRT23Q9C075 422 aa21.78■■□□□ 1.08
CLN3-254ENST00000637050 INCENPQ9NQS7 918 aa21.78■■□□□ 1.08
CLN3-254ENST00000637050 NAV1Q8NEY1 1877 aa21.77■■□□□ 1.08
CLN3-254ENST00000637050 CYP2D7A0A087X1C5 515 aa21.77■■□□□ 1.08
CLN3-254ENST00000637050 B4E1Z4 1266 aa21.77■■□□□ 1.08
CLN3-254ENST00000637050 PRC1O43663 620 aa21.77■■□□□ 1.08
CLN3-254ENST00000637050 RAD17O75943 681 aa21.77■■□□□ 1.08
CLN3-254ENST00000637050 LARGE1O95461 756 aa21.77■■□□□ 1.08
CLN3-254ENST00000637050 FGRP09769 529 aa21.77■■□□□ 1.08
CLN3-254ENST00000637050 APOBEC3HQ6NTF7 200 aaKnown RBP21.77■■□□□ 1.08
CLN3-254ENST00000637050 LRRC2Q9BYS8 371 aa21.77■■□□□ 1.08
CLN3-254ENST00000637050 FOXD4L1Q9NU39 408 aa21.77■■□□□ 1.08
CLN3-254ENST00000637050 MCM9Q9NXL9 1143 aa21.77■■□□□ 1.08
CLN3-254ENST00000637050 SERPINA10Q9UK55 444 aa21.77■■□□□ 1.08
CLN3-254ENST00000637050 SMIM22K7EJ46 135 aa21.76■■□□□ 1.07
CLN3-254ENST00000637050 USP17L8P0C7I0 530 aa21.76■■□□□ 1.07
CLN3-254ENST00000637050 PCP11498 1178 aaKnown RBP21.76■■□□□ 1.07
CLN3-254ENST00000637050 ME3Q16798 604 aa21.76■■□□□ 1.07
CLN3-254ENST00000637050 CYB5R4Q7L1T6 521 aa21.76■■□□□ 1.07
CLN3-254ENST00000637050 CHST3Q7LGC8 479 aa21.76■■□□□ 1.07
CLN3-254ENST00000637050 NKX2-3Q8TAU0 364 aa21.76■■□□□ 1.07
CLN3-254ENST00000637050 JDP2Q8WYK2 163 aa21.76■■□□□ 1.07
CLN3-254ENST00000637050 GMLQ99445 158 aa21.76■■□□□ 1.07
CLN3-254ENST00000637050 DDX60LQ5H9U9 1706 aaKnown RBP21.76■■□□□ 1.07
CLN3-254ENST00000637050 FOCADQ5VW36 1801 aa21.76■■□□□ 1.07
CLN3-254ENST00000637050 FGD1P98174 961 aa21.75■■□□□ 1.07
CLN3-254ENST00000637050 C12orf60Q5U649 245 aa21.75■■□□□ 1.07
CLN3-254ENST00000637050 MAPKAPK5Q8IW41 473 aa21.75■■□□□ 1.07
CLN3-254ENST00000637050 BRF1Q92994 677 aa21.75■■□□□ 1.07
CLN3-254ENST00000637050 FLT1P17948 1338 aa21.75■■□□□ 1.07
CLN3-254ENST00000637050 CYP2D6P10635 497 aa21.74■■□□□ 1.07
CLN3-254ENST00000637050 RASSF7Q02833 373 aa21.74■■□□□ 1.07
CLN3-254ENST00000637050 CXCL9Q07325 125 aa21.74■■□□□ 1.07
CLN3-254ENST00000637050 CDC42EP5Q6NZY7 148 aa21.74■■□□□ 1.07
CLN3-254ENST00000637050 SYT17Q9BSW7 474 aa21.74■■□□□ 1.07
CLN3-254ENST00000637050 CWC22Q9HCG8 908 aaKnown RBP21.74■■□□□ 1.07
CLN3-254ENST00000637050 USP40Q9NVE5 1235 aa21.74■■□□□ 1.07
CLN3-254ENST00000637050 ZSWIM5Q9P217 1185 aa21.74■■□□□ 1.07
CLN3-254ENST00000637050 ROBO3Q96MS0 1386 aa21.73■■□□□ 1.07
CLN3-254ENST00000637050 KDM4AO75164 1064 aa21.73■■□□□ 1.07
CLN3-254ENST00000637050 WDHD1O75717 1129 aaPredicted RBP21.73■■□□□ 1.07
CLN3-254ENST00000637050 PRELPP51888 382 aa21.73■■□□□ 1.07
CLN3-254ENST00000637050 EVCP57679 992 aa21.73■■□□□ 1.07
CLN3-254ENST00000637050 EVX2Q03828 476 aa21.73■■□□□ 1.07
CLN3-254ENST00000637050 AMOTL1Q8IY63 956 aa21.73■■□□□ 1.07
CLN3-254ENST00000637050 CIZ1Q9ULV3 898 aaPredicted RBP21.73■■□□□ 1.07
CLN3-254ENST00000637050 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.73■■□□□ 1.07
CLN3-254ENST00000637050 SLC3A2P08195 630 aaKnown RBP21.72■■□□□ 1.07
CLN3-254ENST00000637050 ST3GAL1Q11201 340 aa21.72■■□□□ 1.07
CLN3-254ENST00000637050 STK11IPQ8N1F8 1099 aa21.72■■□□□ 1.07
CLN3-254ENST00000637050 AGBL3Q8NEM8 1001 aa21.72■■□□□ 1.07
CLN3-254ENST00000637050 TMEM87BQ96K49 555 aa21.72■■□□□ 1.07
CLN3-254ENST00000637050 CHMP5Q9NZZ3 219 aa21.72■■□□□ 1.07
CLN3-254ENST00000637050 ECM29Q5VYK3 1845 aa21.72■■□□□ 1.07
CLN3-254ENST00000637050 ORC4O43929 436 aa21.72■■□□□ 1.07
CLN3-254ENST00000637050 RRP12Q5JTH9 1297 aaKnown RBP21.72■■□□□ 1.07
CLN3-254ENST00000637050 CIAPIN1Q6FI81 312 aa21.72■■□□□ 1.07
CLN3-254ENST00000637050 MTA3Q9BTC8 594 aa21.72■■□□□ 1.07
CLN3-254ENST00000637050 GPHNQ9NQX3 736 aaPredicted RBP21.72■■□□□ 1.07
CLN3-254ENST00000637050 TOMM22Q9NS69 142 aa21.72■■□□□ 1.07
CLN3-254ENST00000637050 PCDHAC2Q9Y5I4 1007 aa21.72■■□□□ 1.07
CLN3-254ENST00000637050 GOLGB1Q14789 3259 aaKnown RBP21.71■■□□□ 1.07
CLN3-254ENST00000637050 RBM5P52756 815 aaKnown RBP eCLIP21.71■■□□□ 1.07
CLN3-254ENST00000637050 APOBRQ0VD83 1088 aa21.71■■□□□ 1.07
CLN3-254ENST00000637050 IGDCC4Q8TDY8 1250 aa21.71■■□□□ 1.07
CLN3-254ENST00000637050 ESR2Q92731 530 aa21.71■■□□□ 1.07
CLN3-254ENST00000637050 ZNF274Q96GC6 653 aaPredicted RBP21.71■■□□□ 1.07
CLN3-254ENST00000637050 SAP30BPQ9UHR5 308 aaKnown RBP21.71■■□□□ 1.07
CLN3-254ENST00000637050 SH2B2O14492 632 aaPredicted RBP21.7■■□□□ 1.06
CLN3-254ENST00000637050 POLR3DP05423 398 aaPredicted RBP21.7■■□□□ 1.06
CLN3-254ENST00000637050 PDE4BQ07343 736 aa21.7■■□□□ 1.06
CLN3-254ENST00000637050 TNIP1Q15025 636 aa21.7■■□□□ 1.06
CLN3-254ENST00000637050 CFAP100Q494V2 611 aa21.7■■□□□ 1.06
CLN3-254ENST00000637050 CCDC83Q8IWF9 413 aa21.7■■□□□ 1.06
CLN3-254ENST00000637050 NECAB1Q8N987 351 aa21.7■■□□□ 1.06
CLN3-254ENST00000637050 DDX4Q9NQI0 724 aaKnown RBP21.7■■□□□ 1.06
CLN3-254ENST00000637050 HDAC9Q9UKV0 1011 aa21.7■■□□□ 1.06
CLN3-254ENST00000637050 ANGEL1Q9UNK9 670 aaKnown RBP21.7■■□□□ 1.06
CLN3-254ENST00000637050 ZBTB12Q9Y330 459 aaPredicted RBP21.7■■□□□ 1.06
CLN3-254ENST00000637050 PLCD1P51178 756 aa21.69■■□□□ 1.06
CLN3-254ENST00000637050 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.69■■□□□ 1.06
CLN3-254ENST00000637050 MYH1P12882 1939 aa21.69■■□□□ 1.06
CLN3-254ENST00000637050 FZD9O00144 591 aa21.69■■□□□ 1.06
CLN3-254ENST00000637050 PFKFB2O60825 505 aa21.69■■□□□ 1.06
CLN3-254ENST00000637050 NT5C2P49902 561 aa21.69■■□□□ 1.06
CLN3-254ENST00000637050 IDI2Q9BXS1 227 aa21.69■■□□□ 1.06
CLN3-254ENST00000637050 PDIA3P30101 505 aaKnown RBP21.68■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms