RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 FUCA2Q9BTY2 467 aa18.25■□□□□ 0.51
CLN3-251ENST00000636853 NUP62CLQ9H1M0 184 aa18.25■□□□□ 0.51
CLN3-251ENST00000636853 AATFQ9NY61 560 aaKnown RBP eCLIP18.25■□□□□ 0.51
CLN3-251ENST00000636853 RCOR1Q9UKL0 485 aa18.25■□□□□ 0.51
CLN3-251ENST00000636853 POLR3DP05423 398 aaPredicted RBP18.25■□□□□ 0.51
CLN3-251ENST00000636853 NR1I2O75469 434 aa18.24■□□□□ 0.51
CLN3-251ENST00000636853 ST5P78524 1137 aa18.24■□□□□ 0.51
CLN3-251ENST00000636853 NTRK3Q16288 839 aa18.24■□□□□ 0.51
CLN3-251ENST00000636853 PROM2Q8N271 834 aa18.24■□□□□ 0.51
CLN3-251ENST00000636853 ANAPC4Q9UJX5 808 aa18.24■□□□□ 0.51
CLN3-251ENST00000636853 CDKL5O76039 1030 aa18.24■□□□□ 0.51
CLN3-251ENST00000636853 WTAPQ15007 396 aa18.24■□□□□ 0.51
CLN3-251ENST00000636853 SART3Q15020 963 aaKnown RBP18.24■□□□□ 0.51
CLN3-251ENST00000636853 CPLX2Q6PUV4 134 aaKnown RBP18.24■□□□□ 0.51
CLN3-251ENST00000636853 ALG1Q9BT22 464 aa18.24■□□□□ 0.51
CLN3-251ENST00000636853 BRIP1Q9BX63 1249 aa18.24■□□□□ 0.51
CLN3-251ENST00000636853 LEMD3Q9Y2U8 911 aa18.24■□□□□ 0.51
CLN3-251ENST00000636853 RANBP6O60518 1105 aaKnown RBP18.23■□□□□ 0.51
CLN3-251ENST00000636853 TXNRD1Q16881 649 aa18.23■□□□□ 0.51
CLN3-251ENST00000636853 XDHP47989 1333 aa18.23■□□□□ 0.51
CLN3-251ENST00000636853 ERICH2A1L162 156 aa18.23■□□□□ 0.51
CLN3-251ENST00000636853 KIF28PB7ZC32 967 aa18.23■□□□□ 0.51
CLN3-251ENST00000636853 UBE2Q2LH0YL09 131 aa18.23■□□□□ 0.51
CLN3-251ENST00000636853 IARSP41252 1262 aaKnown RBP18.23■□□□□ 0.51
CLN3-251ENST00000636853 EVX2Q03828 476 aa18.23■□□□□ 0.51
CLN3-251ENST00000636853 DDR1Q08345 913 aa18.23■□□□□ 0.51
CLN3-251ENST00000636853 ATL3Q6DD88 541 aa18.23■□□□□ 0.51
CLN3-251ENST00000636853 SYNE3Q6ZMZ3 975 aa18.23■□□□□ 0.51
CLN3-251ENST00000636853 MYH2Q9UKX2 1941 aa18.22■□□□□ 0.51
CLN3-251ENST00000636853 CCDC88AQ3V6T2 1871 aa18.22■□□□□ 0.51
CLN3-251ENST00000636853 USP17L12C9JPN9 530 aa18.22■□□□□ 0.51
CLN3-251ENST00000636853 USP17L21D6R901 530 aa18.22■□□□□ 0.51
CLN3-251ENST00000636853 GPSM2P81274 684 aa18.22■□□□□ 0.51
CLN3-251ENST00000636853 MAP3K11Q16584 847 aa18.22■□□□□ 0.51
CLN3-251ENST00000636853 CRY2Q49AN0 593 aa18.22■□□□□ 0.51
CLN3-251ENST00000636853 CTR9Q6PD62 1173 aa18.22■□□□□ 0.51
CLN3-251ENST00000636853 PDLIM2Q96JY6 352 aa18.22■□□□□ 0.51
CLN3-251ENST00000636853 TNMDQ9H2S6 317 aa18.22■□□□□ 0.51
CLN3-251ENST00000636853 PRDM1O75626 825 aa18.21■□□□□ 0.51
CLN3-251ENST00000636853 DZIP1Q86YF9 867 aaKnown RBP18.21■□□□□ 0.51
CLN3-251ENST00000636853 CKAP2LQ8IYA6 745 aa18.21■□□□□ 0.51
CLN3-251ENST00000636853 ESR2Q92731 530 aa18.21■□□□□ 0.51
CLN3-251ENST00000636853 UBAC1Q9BSL1 405 aa18.21■□□□□ 0.51
CLN3-251ENST00000636853 DDX19AQ9NUU7 478 aaKnown RBP18.21■□□□□ 0.51
CLN3-251ENST00000636853 ECM29Q5VYK3 1845 aa18.21■□□□□ 0.51
CLN3-251ENST00000636853 KIF23Q02241 960 aaPredicted RBP18.21■□□□□ 0.51
CLN3-251ENST00000636853 SLC26A6Q9BXS9 759 aa18.21■□□□□ 0.51
CLN3-251ENST00000636853 CLIC4Q9Y696 253 aa18.21■□□□□ 0.51
CLN3-251ENST00000636853 CCAR1Q8IX12 1150 aaKnown RBP18.2■□□□□ 0.5
CLN3-251ENST00000636853 TDRD7Q8NHU6 1098 aaKnown RBP18.2■□□□□ 0.5
CLN3-251ENST00000636853 CRNKL1Q9BZJ0 848 aaKnown RBP18.2■□□□□ 0.5
CLN3-251ENST00000636853 CLSTN2Q9H4D0 955 aa18.2■□□□□ 0.5
CLN3-251ENST00000636853 POLRMTO00411 1230 aaKnown RBP18.2■□□□□ 0.5
CLN3-251ENST00000636853 ME1P48163 572 aa18.2■□□□□ 0.5
CLN3-251ENST00000636853 RTN1Q16799 776 aa18.2■□□□□ 0.5
CLN3-251ENST00000636853 KRT40Q6A162 431 aa18.2■□□□□ 0.5
CLN3-251ENST00000636853 NUP133Q8WUM0 1156 aa18.2■□□□□ 0.5
CLN3-251ENST00000636853 RBM17Q96I25 401 aaKnown RBP18.2■□□□□ 0.5
CLN3-251ENST00000636853 NAP1L5Q96NT1 182 aaPredicted RBP18.2■□□□□ 0.5
CLN3-251ENST00000636853 DCP1AQ9NPI6 582 aaPredicted RBP18.2■□□□□ 0.5
CLN3-251ENST00000636853 RTEL1Q9NZ71 1219 aa18.2■□□□□ 0.5
CLN3-251ENST00000636853 TNKSO95271 1327 aa18.2■□□□□ 0.5
CLN3-251ENST00000636853 MAST2Q6P0Q8 1798 aa18.19■□□□□ 0.5
CLN3-251ENST00000636853 ESPNB1AK53 854 aa18.19■□□□□ 0.5
CLN3-251ENST00000636853 CCDC192P0DO97 292 aa18.19■□□□□ 0.5
CLN3-251ENST00000636853 SSRP1Q08945 709 aaKnown RBP18.19■□□□□ 0.5
CLN3-251ENST00000636853 SEC23AQ15436 765 aa18.19■□□□□ 0.5
CLN3-251ENST00000636853 GRIK5Q16478 980 aa18.19■□□□□ 0.5
CLN3-251ENST00000636853 MYSM1Q5VVJ2 828 aa18.19■□□□□ 0.5
CLN3-251ENST00000636853 SPTY2D1Q68D10 685 aaPredicted RBP18.19■□□□□ 0.5
CLN3-251ENST00000636853 BRAPQ7Z569 592 aa18.19■□□□□ 0.5
CLN3-251ENST00000636853 ZNF654Q8IZM8 581 aa18.19■□□□□ 0.5
CLN3-251ENST00000636853 CMTR1Q8N1G2 835 aaKnown RBP18.19■□□□□ 0.5
CLN3-251ENST00000636853 CCDC82Q8N4S0 544 aa18.19■□□□□ 0.5
CLN3-251ENST00000636853 GOLPH3LQ9H4A5 285 aa18.19■□□□□ 0.5
CLN3-251ENST00000636853 DUOX1Q9NRD9 1551 aa18.19■□□□□ 0.5
CLN3-251ENST00000636853 UFL1O94874 794 aa18.19■□□□□ 0.5
CLN3-251ENST00000636853 ZNF804AQ7Z570 1209 aa18.19■□□□□ 0.5
CLN3-251ENST00000636853 TMTC2Q8N394 836 aa18.19■□□□□ 0.5
CLN3-251ENST00000636853 WDR66Q8TBY9 1149 aa18.19■□□□□ 0.5
CLN3-251ENST00000636853 MTA3Q9BTC8 594 aa18.19■□□□□ 0.5
CLN3-251ENST00000636853 LDHBP07195 334 aaKnown RBP18.18■□□□□ 0.5
CLN3-251ENST00000636853 CYP2D6P10635 497 aa18.18■□□□□ 0.5
CLN3-251ENST00000636853 NID2Q14112 1375 aa18.18■□□□□ 0.5
CLN3-251ENST00000636853 FMNL1O95466 1100 aaPredicted RBP18.18■□□□□ 0.5
CLN3-251ENST00000636853 IFNAR1P17181 557 aa18.18■□□□□ 0.5
CLN3-251ENST00000636853 GUCY1A2P33402 732 aa18.18■□□□□ 0.5
CLN3-251ENST00000636853 SLC4A8Q2Y0W8 1093 aa18.18■□□□□ 0.5
CLN3-251ENST00000636853 UVSSAQ2YD98 709 aa18.18■□□□□ 0.5
CLN3-251ENST00000636853 ENAHQ8N8S7 591 aaPredicted RBP18.18■□□□□ 0.5
CLN3-251ENST00000636853 LINC00301Q8NCQ3 95 aa18.18■□□□□ 0.5
CLN3-251ENST00000636853 PCDHA7Q9UN72 937 aa18.18■□□□□ 0.5
CLN3-251ENST00000636853 STK38Q15208 465 aa18.17■□□□□ 0.5
CLN3-251ENST00000636853 ZNF827Q17R98 1081 aa18.17■□□□□ 0.5
CLN3-251ENST00000636853 ZSCAN10Q96SZ4 725 aaPredicted RBP18.17■□□□□ 0.5
CLN3-251ENST00000636853 ATP8A2Q9NTI2 1148 aa18.17■□□□□ 0.5
CLN3-251ENST00000636853 USP25Q9UHP3 1055 aa18.17■□□□□ 0.5
CLN3-251ENST00000636853 STK36Q9NRP7 1315 aa18.17■□□□□ 0.5
CLN3-251ENST00000636853 TYRO3Q06418 890 aa18.16■□□□□ 0.5
CLN3-251ENST00000636853 TRIM29Q14134 588 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms