RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 USP17L21D6R901 530 aa16.75■□□□□ 0.27
CLN3-242ENST00000635958 SPDYE6P0CI01 402 aa16.75■□□□□ 0.27
CLN3-242ENST00000635958 NEK4P51957 841 aa16.75■□□□□ 0.27
CLN3-242ENST00000635958 RBM5P52756 815 aaKnown RBP eCLIP16.75■□□□□ 0.27
CLN3-242ENST00000635958 HAND2P61296 217 aa16.75■□□□□ 0.27
CLN3-242ENST00000635958 GPC2Q8N158 579 aa16.75■□□□□ 0.27
CLN3-242ENST00000635958 NEK1Q96PY6 1258 aa16.75■□□□□ 0.27
CLN3-242ENST00000635958 RNF181Q9P0P0 153 aa16.75■□□□□ 0.27
CLN3-242ENST00000635958 ARPP21Q9UBL0 812 aaPredicted RBP16.75■□□□□ 0.27
CLN3-242ENST00000635958 BRPF3Q9ULD4 1205 aa16.75■□□□□ 0.27
CLN3-242ENST00000635958 PCDHAC2Q9Y5I4 1007 aa16.75■□□□□ 0.27
CLN3-242ENST00000635958 LAMA4Q16363 1823 aa16.75■□□□□ 0.27
CLN3-242ENST00000635958 CDK5RAP2Q96SN8 1893 aa16.75■□□□□ 0.27
CLN3-242ENST00000635958 HMGB1P09429 215 aaKnown RBP16.75■□□□□ 0.27
CLN3-242ENST00000635958 GMPSP49915 693 aaPredicted RBP16.75■□□□□ 0.27
CLN3-242ENST00000635958 PPARAQ07869 468 aa16.75■□□□□ 0.27
CLN3-242ENST00000635958 DLGAP5Q15398 846 aa16.75■□□□□ 0.27
CLN3-242ENST00000635958 C9orf131Q5VYM1 1079 aa16.75■□□□□ 0.27
CLN3-242ENST00000635958 RUFY3Q7L099 469 aa16.75■□□□□ 0.27
CLN3-242ENST00000635958 HSCBQ8IWL3 235 aa16.75■□□□□ 0.27
CLN3-242ENST00000635958 ADAMTSL1Q8N6G6 1762 aa16.75■□□□□ 0.27
CLN3-242ENST00000635958 IDI2Q9BXS1 227 aa16.75■□□□□ 0.27
CLN3-242ENST00000635958 CIZ1Q9ULV3 898 aaPredicted RBP16.75■□□□□ 0.27
CLN3-242ENST00000635958 BAZ2AQ9UIF9 1905 aaKnown RBP16.74■□□□□ 0.27
CLN3-242ENST00000635958 FOCADQ5VW36 1801 aa16.74■□□□□ 0.27
CLN3-242ENST00000635958 FLT1P17948 1338 aa16.74■□□□□ 0.27
CLN3-242ENST00000635958 FGRP09769 529 aa16.74■□□□□ 0.27
CLN3-242ENST00000635958 CASTP20810 708 aaKnown RBP16.74■□□□□ 0.27
CLN3-242ENST00000635958 C12orf60Q5U649 245 aa16.74■□□□□ 0.27
CLN3-242ENST00000635958 TBC1D10CQ8IV04 446 aa16.74■□□□□ 0.27
CLN3-242ENST00000635958 TTC14Q96N46 770 aa16.74■□□□□ 0.27
CLN3-242ENST00000635958 UPF3BQ9BZI7 483 aaKnown RBP16.74■□□□□ 0.27
CLN3-242ENST00000635958 ALDH8A1Q9H2A2 487 aaPredicted RBP16.74■□□□□ 0.27
CLN3-242ENST00000635958 MCM9Q9NXL9 1143 aa16.74■□□□□ 0.27
CLN3-242ENST00000635958 CYP46A1Q9Y6A2 500 aa16.74■□□□□ 0.27
CLN3-242ENST00000635958 ST18O60284 1047 aa16.73■□□□□ 0.27
CLN3-242ENST00000635958 PCP11498 1178 aaKnown RBP16.73■□□□□ 0.27
CLN3-242ENST00000635958 AKNAD1Q5T1N1 836 aa16.73■□□□□ 0.27
CLN3-242ENST00000635958 BLOC1S2Q6QNY1 142 aa16.73■□□□□ 0.27
CLN3-242ENST00000635958 MAPKAPK5Q8IW41 473 aa16.73■□□□□ 0.27
CLN3-242ENST00000635958 STAG1Q8WVM7 1258 aa16.73■□□□□ 0.27
CLN3-242ENST00000635958 GJA3Q9Y6H8 435 aa16.73■□□□□ 0.27
CLN3-242ENST00000635958 ZC3H4Q9UPT8 1303 aaKnown RBP16.73■□□□□ 0.27
CLN3-242ENST00000635958 MINDY4BA8MYZ0 360 aa16.73■□□□□ 0.27
CLN3-242ENST00000635958 RPS6KB1P23443 525 aa16.73■□□□□ 0.27
CLN3-242ENST00000635958 MCM4P33991 863 aa16.73■□□□□ 0.27
CLN3-242ENST00000635958 SLKQ9H2G2 1235 aaPredicted RBP16.73■□□□□ 0.27
CLN3-242ENST00000635958 MYOZ2Q9NPC6 264 aa16.73■□□□□ 0.27
CLN3-242ENST00000635958 DDX4Q9NQI0 724 aaKnown RBP16.73■□□□□ 0.27
CLN3-242ENST00000635958 CNOT7Q9UIV1 285 aaKnown RBP16.73■□□□□ 0.27
CLN3-242ENST00000635958 ECM29Q5VYK3 1845 aa16.72■□□□□ 0.27
CLN3-242ENST00000635958 TIAM2Q8IVF5 1701 aa16.72■□□□□ 0.27
CLN3-242ENST00000635958 DDX11L8A8MPP1 907 aa16.72■□□□□ 0.27
CLN3-242ENST00000635958 EXOSC10Q01780 885 aaKnown RBP16.72■□□□□ 0.27
CLN3-242ENST00000635958 CTDSPL2Q05D32 466 aa16.72■□□□□ 0.27
CLN3-242ENST00000635958 COL9A3Q14050 684 aaPredicted RBP16.72■□□□□ 0.27
CLN3-242ENST00000635958 FKBP1CQ5VVH2 108 aa16.72■□□□□ 0.27
CLN3-242ENST00000635958 DHX32Q7L7V1 743 aaKnown RBP16.72■□□□□ 0.27
CLN3-242ENST00000635958 NCOA7Q8NI08 942 aa16.72■□□□□ 0.27
CLN3-242ENST00000635958 RNF41Q9H4P4 317 aaPredicted RBP16.72■□□□□ 0.27
CLN3-242ENST00000635958 TDRD3Q9H7E2 651 aaKnown RBP16.72■□□□□ 0.27
CLN3-242ENST00000635958 TACC3Q9Y6A5 838 aa16.72■□□□□ 0.27
CLN3-242ENST00000635958 CYP2D7A0A087X1C5 515 aa16.71■□□□□ 0.27
CLN3-242ENST00000635958 CD2BP2O95400 341 aaKnown RBP16.71■□□□□ 0.27
CLN3-242ENST00000635958 MFSD6Q6ZSS7 791 aa16.71■□□□□ 0.27
CLN3-242ENST00000635958 MB21D2Q8IYB1 491 aaPredicted RBP16.71■□□□□ 0.27
CLN3-242ENST00000635958 CNNM2Q9H8M5 875 aa16.71■□□□□ 0.27
CLN3-242ENST00000635958 FAM198AQ9UFP1 575 aa16.71■□□□□ 0.27
CLN3-242ENST00000635958 DDX60LQ5H9U9 1706 aaKnown RBP16.71■□□□□ 0.27
CLN3-242ENST00000635958 ROBO3Q96MS0 1386 aa16.71■□□□□ 0.27
CLN3-242ENST00000635958 CPA1P15085 419 aa16.7■□□□□ 0.26
CLN3-242ENST00000635958 MCM2P49736 904 aa16.7■□□□□ 0.26
CLN3-242ENST00000635958 NFIAQ12857 509 aa16.7■□□□□ 0.26
CLN3-242ENST00000635958 TRDNQ13061 729 aa16.7■□□□□ 0.26
CLN3-242ENST00000635958 SPDYE2Q495Y8 402 aa16.7■□□□□ 0.26
CLN3-242ENST00000635958 MICALL2Q8IY33 904 aa16.7■□□□□ 0.26
CLN3-242ENST00000635958 AMOTL1Q8IY63 956 aa16.7■□□□□ 0.26
CLN3-242ENST00000635958 FBXL16Q8N461 479 aa16.7■□□□□ 0.26
CLN3-242ENST00000635958 OSBPL5Q9H0X9 879 aaPredicted RBP16.7■□□□□ 0.26
CLN3-242ENST00000635958 ZNF70Q9UC06 446 aaPredicted RBP16.7■□□□□ 0.26
CLN3-242ENST00000635958 WDR19Q8NEZ3 1342 aa16.7■□□□□ 0.26
CLN3-242ENST00000635958 NAV1Q8NEY1 1877 aa16.7■□□□□ 0.26
CLN3-242ENST00000635958 SHTN1A0MZ66 631 aa16.7■□□□□ 0.26
CLN3-242ENST00000635958 SMIM22K7EJ46 135 aa16.7■□□□□ 0.26
CLN3-242ENST00000635958 WNT10BO00744 389 aa16.7■□□□□ 0.26
CLN3-242ENST00000635958 ENTPD3O75355 529 aa16.7■□□□□ 0.26
CLN3-242ENST00000635958 POLR3DP05423 398 aaPredicted RBP16.7■□□□□ 0.26
CLN3-242ENST00000635958 SLC3A2P08195 630 aaKnown RBP16.7■□□□□ 0.26
CLN3-242ENST00000635958 CYP2D6P10635 497 aa16.7■□□□□ 0.26
CLN3-242ENST00000635958 NT5C2P49902 561 aa16.7■□□□□ 0.26
CLN3-242ENST00000635958 KRT23Q9C075 422 aa16.7■□□□□ 0.26
CLN3-242ENST00000635958 PDRG1Q9NUG6 133 aa16.7■□□□□ 0.26
CLN3-242ENST00000635958 GPRC5DQ9NZD1 345 aa16.7■□□□□ 0.26
CLN3-242ENST00000635958 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.7■□□□□ 0.26
CLN3-242ENST00000635958 MYH1P12882 1939 aa16.69■□□□□ 0.26
CLN3-242ENST00000635958 H7C1D1 291 aa16.69■□□□□ 0.26
CLN3-242ENST00000635958 ORC4O43929 436 aa16.69■□□□□ 0.26
CLN3-242ENST00000635958 PLCD1P51178 756 aa16.69■□□□□ 0.26
CLN3-242ENST00000635958 TTC6Q86TZ1 520 aa16.69■□□□□ 0.26
CLN3-242ENST00000635958 AGXT2Q9BYV1 514 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms