RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 DOCK2Q92608 1830 aa21.9■■□□□ 1.1
CLN3-239ENST00000628023 BAG3O95817 575 aa21.9■■□□□ 1.1
CLN3-239ENST00000628023 MAP4K4O95819 1239 aaPredicted RBP21.9■■□□□ 1.1
CLN3-239ENST00000628023 PDE1AP54750 535 aa21.9■■□□□ 1.1
CLN3-239ENST00000628023 MKRN3Q13064 507 aaKnown RBP21.9■■□□□ 1.1
CLN3-239ENST00000628023 PI4K2BQ8TCG2 481 aa21.9■■□□□ 1.1
CLN3-239ENST00000628023 GPR75-ASB3A0A0A6YYF3 556 aa21.89■■□□□ 1.09
CLN3-239ENST00000628023 TBC1D8O95759 1140 aa21.89■■□□□ 1.09
CLN3-239ENST00000628023 RASA3Q14644 834 aa21.89■■□□□ 1.09
CLN3-239ENST00000628023 SLC9C2Q5TAH2 1124 aa21.89■■□□□ 1.09
CLN3-239ENST00000628023 AATFQ9NY61 560 aaKnown RBP eCLIP21.89■■□□□ 1.09
CLN3-239ENST00000628023 UNCXA6NJT0 531 aa21.88■■□□□ 1.09
CLN3-239ENST00000628023 PDE6AP16499 860 aa21.88■■□□□ 1.09
CLN3-239ENST00000628023 SPRYD7Q5W111 196 aa21.88■■□□□ 1.09
CLN3-239ENST00000628023 TMED8Q6PL24 325 aaPredicted RBP21.88■■□□□ 1.09
CLN3-239ENST00000628023 CENPQQ7L2Z9 268 aaPredicted RBP21.88■■□□□ 1.09
CLN3-239ENST00000628023 STAP2Q9UGK3 403 aa21.88■■□□□ 1.09
CLN3-239ENST00000628023 ALDH1A1P00352 501 aa21.87■■□□□ 1.09
CLN3-239ENST00000628023 INHBEP58166 350 aa21.87■■□□□ 1.09
CLN3-239ENST00000628023 PKN2Q16513 984 aaKnown RBP21.87■■□□□ 1.09
CLN3-239ENST00000628023 MAP3K11Q16584 847 aa21.87■■□□□ 1.09
CLN3-239ENST00000628023 ZSCAN25Q6NSZ9 544 aa21.87■■□□□ 1.09
CLN3-239ENST00000628023 ZNF532Q9HCE3 1301 aa21.86■■□□□ 1.09
CLN3-239ENST00000628023 MANSC4A6NHS7 340 aaPredicted RBP21.86■■□□□ 1.09
CLN3-239ENST00000628023 PLCG2P16885 1265 aa21.86■■□□□ 1.09
CLN3-239ENST00000628023 IREB2P48200 963 aaKnown RBP21.86■■□□□ 1.09
CLN3-239ENST00000628023 FKBP1CQ5VVH2 108 aa21.86■■□□□ 1.09
CLN3-239ENST00000628023 ADGRA1Q86SQ6 560 aa21.86■■□□□ 1.09
CLN3-239ENST00000628023 MIGA1Q8NAN2 632 aa21.86■■□□□ 1.09
CLN3-239ENST00000628023 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.86■■□□□ 1.09
CLN3-239ENST00000628023 ZBTB48P10074 688 aaPredicted RBP21.85■■□□□ 1.09
CLN3-239ENST00000628023 TCP10Q12799 353 aa21.85■■□□□ 1.09
CLN3-239ENST00000628023 PICALMQ13492 652 aa21.85■■□□□ 1.09
CLN3-239ENST00000628023 NOM1Q5C9Z4 860 aaKnown RBP21.85■■□□□ 1.09
CLN3-239ENST00000628023 ERICH6BQ5W0A0 696 aa21.85■■□□□ 1.09
CLN3-239ENST00000628023 FAM83AQ86UY5 434 aa21.85■■□□□ 1.09
CLN3-239ENST00000628023 PLEKHM2Q8IWE5 1019 aa21.85■■□□□ 1.09
CLN3-239ENST00000628023 TEX11Q8IYF3 940 aa21.85■■□□□ 1.09
CLN3-239ENST00000628023 KBTBD3Q8NAB2 608 aa21.85■■□□□ 1.09
CLN3-239ENST00000628023 ZNF296Q8WUU4 475 aaPredicted RBP21.85■■□□□ 1.09
CLN3-239ENST00000628023 FSD1Q9BTV5 496 aa21.85■■□□□ 1.09
CLN3-239ENST00000628023 TMEM39BQ9GZU3 492 aa21.85■■□□□ 1.09
CLN3-239ENST00000628023 GPR25O00155 361 aa21.84■■□□□ 1.09
CLN3-239ENST00000628023 ADD2P35612 726 aa21.84■■□□□ 1.09
CLN3-239ENST00000628023 NFIAQ12857 509 aa21.84■■□□□ 1.09
CLN3-239ENST00000628023 LRRFIP1Q32MZ4 808 aaKnown RBP21.84■■□□□ 1.09
CLN3-239ENST00000628023 CERS3Q8IU89 383 aa21.84■■□□□ 1.09
CLN3-239ENST00000628023 SH3RF3Q8TEJ3 882 aaPredicted RBP21.84■■□□□ 1.09
CLN3-239ENST00000628023 MAGEB6P1A0A0J9YX57 407 aa21.83■■□□□ 1.09
CLN3-239ENST00000628023 TRIM6-TRIM34B2RNG4 842 aa21.83■■□□□ 1.09
CLN3-239ENST00000628023 RGS3P49796 1198 aa21.83■■□□□ 1.09
CLN3-239ENST00000628023 RHBDL3P58872 404 aa21.83■■□□□ 1.09
CLN3-239ENST00000628023 NBPF12Q5TAG4 269 aaPredicted RBP21.83■■□□□ 1.09
CLN3-239ENST00000628023 CFHR5Q9BXR6 569 aa21.83■■□□□ 1.09
CLN3-239ENST00000628023 FZD1Q9UP38 647 aa21.83■■□□□ 1.09
CLN3-239ENST00000628023 WDHD1O75717 1129 aaPredicted RBP21.82■■□□□ 1.08
CLN3-239ENST00000628023 PDE4AP27815 886 aa21.82■■□□□ 1.08
CLN3-239ENST00000628023 PPP4CP60510 307 aa21.82■■□□□ 1.08
CLN3-239ENST00000628023 DYNLL1P63167 89 aaKnown RBP21.82■■□□□ 1.08
CLN3-239ENST00000628023 IDI2Q9BXS1 227 aa21.82■■□□□ 1.08
CLN3-239ENST00000628023 FAM198AQ9UFP1 575 aa21.82■■□□□ 1.08
CLN3-239ENST00000628023 MYH7P12883 1935 aa21.82■■□□□ 1.08
CLN3-239ENST00000628023 TCRBV5S4A2TA0A5A2 114 aa21.81■■□□□ 1.08
CLN3-239ENST00000628023 FKTNO75072 461 aa21.81■■□□□ 1.08
CLN3-239ENST00000628023 UBE3CQ15386 1083 aa21.81■■□□□ 1.08
CLN3-239ENST00000628023 OTUD7BQ6GQQ9 843 aa21.81■■□□□ 1.08
CLN3-239ENST00000628023 ZSCAN29Q8IWY8 852 aaPredicted RBP21.81■■□□□ 1.08
CLN3-239ENST00000628023 ANKRD13AQ8IZ07 590 aa21.81■■□□□ 1.08
CLN3-239ENST00000628023 FAM151AQ8WW52 585 aa21.81■■□□□ 1.08
CLN3-239ENST00000628023 EVI5LQ96CN4 794 aa21.81■■□□□ 1.08
CLN3-239ENST00000628023 WNK4Q96J92 1243 aa21.81■■□□□ 1.08
CLN3-239ENST00000628023 OSBPL3Q9H4L5 887 aa21.81■■□□□ 1.08
CLN3-239ENST00000628023 PPP4R2Q9NY27 417 aa21.81■■□□□ 1.08
CLN3-239ENST00000628023 RFX7Q2KHR2 1363 aa21.81■■□□□ 1.08
CLN3-239ENST00000628023 RPAP1Q9BWH6 1393 aaPredicted RBP21.81■■□□□ 1.08
CLN3-239ENST00000628023 ENTPD3O75355 529 aa21.8■■□□□ 1.08
CLN3-239ENST00000628023 USP2O75604 605 aaPredicted RBP21.8■■□□□ 1.08
CLN3-239ENST00000628023 ZFYP08048 801 aaPredicted RBP21.8■■□□□ 1.08
CLN3-239ENST00000628023 SLFNL1Q499Z3 407 aa21.8■■□□□ 1.08
CLN3-239ENST00000628023 HOOK2Q96ED9 719 aa21.8■■□□□ 1.08
CLN3-239ENST00000628023 CLMNQ96JQ2 1002 aa21.8■■□□□ 1.08
CLN3-239ENST00000628023 DDX4Q9NQI0 724 aaKnown RBP21.8■■□□□ 1.08
CLN3-239ENST00000628023 SSC5DA1L4H1 1573 aa21.79■■□□□ 1.08
CLN3-239ENST00000628023 RNF113AO15541 343 aaKnown RBP21.79■■□□□ 1.08
CLN3-239ENST00000628023 USP5P45974 858 aa21.79■■□□□ 1.08
CLN3-239ENST00000628023 IFNL1Q8IU54 200 aa21.79■■□□□ 1.08
CLN3-239ENST00000628023 CDAN1Q8IWY9 1227 aa21.79■■□□□ 1.08
CLN3-239ENST00000628023 TGFBRAP1Q8WUH2 860 aa21.79■■□□□ 1.08
CLN3-239ENST00000628023 RILPL2Q969X0 211 aa21.79■■□□□ 1.08
CLN3-239ENST00000628023 MBD4O95243 580 aa21.78■■□□□ 1.08
CLN3-239ENST00000628023 TEPSINQ96N21 525 aa21.78■■□□□ 1.08
CLN3-239ENST00000628023 CRNKL1Q9BZJ0 848 aaKnown RBP21.78■■□□□ 1.08
CLN3-239ENST00000628023 HPS5Q9UPZ3 1129 aa21.78■■□□□ 1.08
CLN3-239ENST00000628023 AK9Q5TCS8 1911 aa21.78■■□□□ 1.08
CLN3-239ENST00000628023 CHGBP05060 677 aa21.77■■□□□ 1.08
CLN3-239ENST00000628023 SOX10P56693 466 aa21.77■■□□□ 1.08
CLN3-239ENST00000628023 MAPKAPK5Q8IW41 473 aa21.77■■□□□ 1.08
CLN3-239ENST00000628023 ZFPM1Q8IX07 1006 aa21.77■■□□□ 1.08
CLN3-239ENST00000628023 APPBP2Q92624 585 aa21.77■■□□□ 1.08
CLN3-239ENST00000628023 RIOK1Q9BRS2 568 aaKnown RBP21.77■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms