RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 RPAP1Q9BWH6 1393 aaPredicted RBP23■■□□□ 1.27
SQSTM1-216ENST00000626660 HIP1O00291 1037 aa22.99■■□□□ 1.27
SQSTM1-216ENST00000626660 SDSP20132 328 aa22.99■■□□□ 1.27
SQSTM1-216ENST00000626660 USP5P45974 858 aa22.99■■□□□ 1.27
SQSTM1-216ENST00000626660 ZMYM1Q5SVZ6 1142 aa22.99■■□□□ 1.27
SQSTM1-216ENST00000626660 LCORLQ8N3X6 602 aa22.99■■□□□ 1.27
SQSTM1-216ENST00000626660 HOOK2Q96ED9 719 aa22.99■■□□□ 1.27
SQSTM1-216ENST00000626660 PUS7LQ9H0K6 701 aaKnown RBP22.99■■□□□ 1.27
SQSTM1-216ENST00000626660 DDX4Q9NQI0 724 aaKnown RBP22.99■■□□□ 1.27
SQSTM1-216ENST00000626660 ZSCAN29Q8IWY8 852 aaPredicted RBP22.98■■□□□ 1.27
SQSTM1-216ENST00000626660 OSBP2Q969R2 916 aa22.98■■□□□ 1.27
SQSTM1-216ENST00000626660 DIAPH3Q9NSV4 1193 aa22.98■■□□□ 1.27
SQSTM1-216ENST00000626660 NBPF12Q5TAG4 269 aaPredicted RBP22.97■■□□□ 1.27
SQSTM1-216ENST00000626660 MAPKAPK5Q8IW41 473 aa22.97■■□□□ 1.27
SQSTM1-216ENST00000626660 MYH1P12882 1939 aa22.96■■□□□ 1.27
SQSTM1-216ENST00000626660 TMEM88BA6NKF7 163 aa22.96■■□□□ 1.27
SQSTM1-216ENST00000626660 C2orf69Q8N8R5 385 aa22.96■■□□□ 1.27
SQSTM1-216ENST00000626660 TEPSINQ96N21 525 aa22.96■■□□□ 1.27
SQSTM1-216ENST00000626660 OSBPL5Q9H0X9 879 aaPredicted RBP22.96■■□□□ 1.27
SQSTM1-216ENST00000626660 GBA2Q9HCG7 927 aaPredicted RBP22.96■■□□□ 1.27
SQSTM1-216ENST00000626660 HELLSQ9NRZ9 838 aa22.96■■□□□ 1.27
SQSTM1-216ENST00000626660 FLT1P17948 1338 aa22.96■■□□□ 1.27
SQSTM1-216ENST00000626660 GPAA1O43292 621 aa22.95■■□□□ 1.26
SQSTM1-216ENST00000626660 COL2A1P02458 1487 aaPredicted RBP22.95■■□□□ 1.26
SQSTM1-216ENST00000626660 TTLL12Q14166 644 aaPredicted RBP22.95■■□□□ 1.26
SQSTM1-216ENST00000626660 ZFPM1Q8IX07 1006 aa22.95■■□□□ 1.26
SQSTM1-216ENST00000626660 DDRGK1Q96HY6 314 aa22.95■■□□□ 1.26
SQSTM1-216ENST00000626660 NAV1Q8NEY1 1877 aa22.94■■□□□ 1.26
SQSTM1-216ENST00000626660 M0R2C6 588 aa22.94■■□□□ 1.26
SQSTM1-216ENST00000626660 PPP1R12BO60237 982 aaPredicted RBP22.94■■□□□ 1.26
SQSTM1-216ENST00000626660 GNAT2P19087 354 aa22.94■■□□□ 1.26
SQSTM1-216ENST00000626660 FKBP1BP68106 108 aa22.94■■□□□ 1.26
SQSTM1-216ENST00000626660 NMIQ13287 307 aaPredicted RBP22.94■■□□□ 1.26
SQSTM1-216ENST00000626660 BMP2KLQ5H9B9 411 aa22.94■■□□□ 1.26
SQSTM1-216ENST00000626660 CST9Q5W186 159 aa22.94■■□□□ 1.26
SQSTM1-216ENST00000626660 DCAF15Q66K64 600 aa22.94■■□□□ 1.26
SQSTM1-216ENST00000626660 CSRNP1Q96S65 589 aa22.94■■□□□ 1.26
SQSTM1-216ENST00000626660 STRBPQ96SI9 672 aaKnown RBP22.94■■□□□ 1.26
SQSTM1-216ENST00000626660 DHX36Q9H2U1 1008 aaKnown RBP22.94■■□□□ 1.26
SQSTM1-216ENST00000626660 SLC4A4Q9Y6R1 1079 aa22.94■■□□□ 1.26
SQSTM1-216ENST00000626660 PAPPA2Q9BXP8 1791 aa22.94■■□□□ 1.26
SQSTM1-216ENST00000626660 ATRNL1Q5VV63 1379 aa22.93■■□□□ 1.26
SQSTM1-216ENST00000626660 ARMC9Q7Z3E5 817 aa22.93■■□□□ 1.26
SQSTM1-216ENST00000626660 CDAN1Q8IWY9 1227 aa22.93■■□□□ 1.26
SQSTM1-216ENST00000626660 FAM227BQ96M60 508 aa22.93■■□□□ 1.26
SQSTM1-216ENST00000626660 SEC62Q99442 399 aaKnown RBP22.93■■□□□ 1.26
SQSTM1-216ENST00000626660 CREBZFQ9NS37 354 aa22.93■■□□□ 1.26
SQSTM1-216ENST00000626660 ATP8A2Q9NTI2 1148 aa22.93■■□□□ 1.26
SQSTM1-216ENST00000626660 A0A0D9SFI3 127 aa22.92■■□□□ 1.26
SQSTM1-216ENST00000626660 PRKG1Q13976 671 aa22.92■■□□□ 1.26
SQSTM1-216ENST00000626660 MCMDC2Q4G0Z9 681 aa22.92■■□□□ 1.26
SQSTM1-216ENST00000626660 SDR42E1Q8WUS8 393 aa22.92■■□□□ 1.26
SQSTM1-216ENST00000626660 SAP30BPQ9UHR5 308 aaKnown RBP22.92■■□□□ 1.26
SQSTM1-216ENST00000626660 ABT1Q9ULW3 272 aaKnown RBP22.92■■□□□ 1.26
SQSTM1-216ENST00000626660 SSC5DA1L4H1 1573 aa22.92■■□□□ 1.26
SQSTM1-216ENST00000626660 DDTLA6NHG4 134 aaPredicted RBP22.91■■□□□ 1.26
SQSTM1-216ENST00000626660 PRKAB2O43741 272 aa22.91■■□□□ 1.26
SQSTM1-216ENST00000626660 HLA-DOAP06340 250 aa22.91■■□□□ 1.26
SQSTM1-216ENST00000626660 MFAP1P55081 439 aaKnown RBP22.91■■□□□ 1.26
SQSTM1-216ENST00000626660 SH3BP5LQ7L8J4 393 aa22.91■■□□□ 1.26
SQSTM1-216ENST00000626660 MCM9Q9NXL9 1143 aa22.91■■□□□ 1.26
SQSTM1-216ENST00000626660 BAZ2AQ9UIF9 1905 aaKnown RBP22.9■■□□□ 1.26
SQSTM1-216ENST00000626660 APPP05067 770 aa22.9■■□□□ 1.26
SQSTM1-216ENST00000626660 HSPA1AP0DMV8 641 aaKnown RBP22.9■■□□□ 1.26
SQSTM1-216ENST00000626660 HSPA1BP0DMV9 641 aaKnown RBP22.9■■□□□ 1.26
SQSTM1-216ENST00000626660 IREB2P48200 963 aaKnown RBP22.9■■□□□ 1.26
SQSTM1-216ENST00000626660 CWC27Q6UX04 472 aaKnown RBP22.9■■□□□ 1.26
SQSTM1-216ENST00000626660 AMOTL1Q8IY63 956 aa22.9■■□□□ 1.26
SQSTM1-216ENST00000626660 RUFY2Q8WXA3 655 aa22.9■■□□□ 1.26
SQSTM1-216ENST00000626660 DCP1AQ9NPI6 582 aaPredicted RBP22.9■■□□□ 1.26
SQSTM1-216ENST00000626660 PALD1Q9ULE6 856 aa22.9■■□□□ 1.26
SQSTM1-216ENST00000626660 ANGEL1Q9UNK9 670 aaKnown RBP22.9■■□□□ 1.26
SQSTM1-216ENST00000626660 POLR3DP05423 398 aaPredicted RBP22.89■■□□□ 1.25
SQSTM1-216ENST00000626660 CCDC129Q6ZRS4 1044 aa22.89■■□□□ 1.25
SQSTM1-216ENST00000626660 TTC6Q86TZ1 520 aa22.89■■□□□ 1.25
SQSTM1-216ENST00000626660 TRIM34Q9BYJ4 488 aa22.89■■□□□ 1.25
SQSTM1-216ENST00000626660 ZNF341Q9BYN7 854 aa22.89■■□□□ 1.25
SQSTM1-216ENST00000626660 NACAP1Q9BZK3 213 aa22.89■■□□□ 1.25
SQSTM1-216ENST00000626660 PI4KBQ9UBF8 816 aa22.89■■□□□ 1.25
SQSTM1-216ENST00000626660 MKRN1Q9UHC7 482 aaKnown RBP22.89■■□□□ 1.25
SQSTM1-216ENST00000626660 GTF3C3Q9Y5Q9 886 aa22.89■■□□□ 1.25
SQSTM1-216ENST00000626660 TLL2Q9Y6L7 1015 aa22.89■■□□□ 1.25
SQSTM1-216ENST00000626660 DDX60LQ5H9U9 1706 aaKnown RBP22.88■■□□□ 1.25
SQSTM1-216ENST00000626660 CHMLP26374 656 aa22.88■■□□□ 1.25
SQSTM1-216ENST00000626660 HUNKP57058 714 aa22.88■■□□□ 1.25
SQSTM1-216ENST00000626660 GIMAP6Q6P9H5 292 aa22.88■■□□□ 1.25
SQSTM1-216ENST00000626660 MIGA2Q7L4E1 593 aa22.88■■□□□ 1.25
SQSTM1-216ENST00000626660 CCDC171Q6TFL3 1326 aa22.87■■□□□ 1.25
SQSTM1-216ENST00000626660 GSG1L2A8MUP6 293 aa22.87■■□□□ 1.25
SQSTM1-216ENST00000626660 PATL2C9JE40 543 aaKnown RBP22.87■■□□□ 1.25
SQSTM1-216ENST00000626660 SAPCD2Q86UD0 394 aa22.87■■□□□ 1.25
SQSTM1-216ENST00000626660 RAD50Q92878 1312 aa22.86■■□□□ 1.25
SQSTM1-216ENST00000626660 UBE2Q2LH0YL09 131 aa22.86■■□□□ 1.25
SQSTM1-216ENST00000626660 USP2O75604 605 aaPredicted RBP22.86■■□□□ 1.25
SQSTM1-216ENST00000626660 TDO2P48775 406 aa22.86■■□□□ 1.25
SQSTM1-216ENST00000626660 MAP3K11Q16584 847 aa22.86■■□□□ 1.25
SQSTM1-216ENST00000626660 SLC4A8Q2Y0W8 1093 aa22.86■■□□□ 1.25
SQSTM1-216ENST00000626660 MOB2Q70IA6 237 aa22.86■■□□□ 1.25
SQSTM1-216ENST00000626660 FOXP4Q8IVH2 680 aaPredicted RBP22.86■■□□□ 1.25
SQSTM1-216ENST00000626660 CRACR2BQ8N4Y2 399 aaPredicted RBP22.86■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms