RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 MTMR6Q9Y217 621 aa18.28■□□□□ 0.52
CPSF1-213ENST00000620219 CYP2D6P10635 497 aa18.28■□□□□ 0.52
CPSF1-213ENST00000620219 OGFOD1Q8N543 542 aa18.27■□□□□ 0.52
CPSF1-213ENST00000620219 TMEM63CQ9P1W3 806 aa18.27■□□□□ 0.52
CPSF1-213ENST00000620219 KINO60870 393 aaKnown RBP18.27■□□□□ 0.52
CPSF1-213ENST00000620219 TMEM87BQ96K49 555 aa18.27■□□□□ 0.52
CPSF1-213ENST00000620219 SCAND2PQ9GZW5 306 aaPredicted RBP18.27■□□□□ 0.52
CPSF1-213ENST00000620219 BCS1LQ9Y276 419 aa18.27■□□□□ 0.52
CPSF1-213ENST00000620219 GSG1L2A8MUP6 293 aa18.27■□□□□ 0.51
CPSF1-213ENST00000620219 SEMA3EO15041 775 aa18.27■□□□□ 0.51
CPSF1-213ENST00000620219 TFAP4Q01664 338 aa18.27■□□□□ 0.51
CPSF1-213ENST00000620219 SLC15A2Q16348 729 aa18.27■□□□□ 0.51
CPSF1-213ENST00000620219 CNKSR1Q969H4 720 aa18.27■□□□□ 0.51
CPSF1-213ENST00000620219 CKAP2LQ8IYA6 745 aa18.26■□□□□ 0.51
CPSF1-213ENST00000620219 CCDC96Q2M329 555 aa18.26■□□□□ 0.51
CPSF1-213ENST00000620219 CREBRFQ8IUR6 639 aa18.26■□□□□ 0.51
CPSF1-213ENST00000620219 TMTC2Q8N394 836 aa18.26■□□□□ 0.51
CPSF1-213ENST00000620219 DYNLL2Q96FJ2 89 aa18.26■□□□□ 0.51
CPSF1-213ENST00000620219 ARFGEF2Q9Y6D5 1785 aa18.26■□□□□ 0.51
CPSF1-213ENST00000620219 HLA-DOAP06340 250 aa18.26■□□□□ 0.51
CPSF1-213ENST00000620219 SASS6Q6UVJ0 657 aa18.26■□□□□ 0.51
CPSF1-213ENST00000620219 TBC1D16Q8TBP0 767 aa18.26■□□□□ 0.51
CPSF1-213ENST00000620219 TBC1D22AQ8WUA7 517 aa18.26■□□□□ 0.51
CPSF1-213ENST00000620219 WASF1Q92558 559 aa18.26■□□□□ 0.51
CPSF1-213ENST00000620219 MXD3Q9BW11 206 aa18.26■□□□□ 0.51
CPSF1-213ENST00000620219 USP40Q9NVE5 1235 aa18.26■□□□□ 0.51
CPSF1-213ENST00000620219 SIPA1L3O60292 1781 aaPredicted RBP18.26■□□□□ 0.51
CPSF1-213ENST00000620219 PLCG2P16885 1265 aa18.25■□□□□ 0.51
CPSF1-213ENST00000620219 GIMAP6Q6P9H5 292 aa18.25■□□□□ 0.51
CPSF1-213ENST00000620219 TNMDQ9H2S6 317 aa18.25■□□□□ 0.51
CPSF1-213ENST00000620219 RIC1Q4ADV7 1423 aa18.25■□□□□ 0.51
CPSF1-213ENST00000620219 TNKSO95271 1327 aa18.25■□□□□ 0.51
CPSF1-213ENST00000620219 NEDD4P46934 1319 aa18.25■□□□□ 0.51
CPSF1-213ENST00000620219 CYB5R4Q7L1T6 521 aa18.24■□□□□ 0.51
CPSF1-213ENST00000620219 GJB4Q9NTQ9 266 aa18.24■□□□□ 0.51
CPSF1-213ENST00000620219 PSDA5PKW4 1024 aaPredicted RBP18.24■□□□□ 0.51
CPSF1-213ENST00000620219 POLRMTO00411 1230 aaKnown RBP18.24■□□□□ 0.51
CPSF1-213ENST00000620219 PFKFB2O60825 505 aa18.24■□□□□ 0.51
CPSF1-213ENST00000620219 PROM2Q8N271 834 aa18.24■□□□□ 0.51
CPSF1-213ENST00000620219 SH3RF3Q8TEJ3 882 aaPredicted RBP18.24■□□□□ 0.51
CPSF1-213ENST00000620219 JDP2Q8WYK2 163 aa18.24■□□□□ 0.51
CPSF1-213ENST00000620219 CACNB3P54284 484 aa18.24■□□□□ 0.51
CPSF1-213ENST00000620219 NLRP5P59047 1200 aa18.24■□□□□ 0.51
CPSF1-213ENST00000620219 FBXO33Q7Z6M2 555 aa18.24■□□□□ 0.51
CPSF1-213ENST00000620219 DOT1LQ8TEK3 1739 aa18.24■□□□□ 0.51
CPSF1-213ENST00000620219 BECN2A8MW95 431 aa18.23■□□□□ 0.51
CPSF1-213ENST00000620219 RAD17O75943 681 aa18.23■□□□□ 0.51
CPSF1-213ENST00000620219 MARCKSP29966 332 aaPredicted RBP18.23■□□□□ 0.51
CPSF1-213ENST00000620219 TSPY26PQ9H489 355 aa18.23■□□□□ 0.51
CPSF1-213ENST00000620219 NSUN4Q96CB9 384 aaKnown RBP18.23■□□□□ 0.51
CPSF1-213ENST00000620219 ONECUT3O60422 494 aaPredicted RBP18.23■□□□□ 0.51
CPSF1-213ENST00000620219 GJA3Q9Y6H8 435 aa18.23■□□□□ 0.51
CPSF1-213ENST00000620219 NUP62CLQ9H1M0 184 aa18.23■□□□□ 0.51
CPSF1-213ENST00000620219 EPB41L4AQ9HCS5 686 aaPredicted RBP18.23■□□□□ 0.51
CPSF1-213ENST00000620219 V9GY48 417 aaPredicted RBP18.23■□□□□ 0.51
CPSF1-213ENST00000620219 ZNF274Q96GC6 653 aaPredicted RBP18.22■□□□□ 0.51
CPSF1-213ENST00000620219 ADGRA1Q86SQ6 560 aa18.22■□□□□ 0.51
CPSF1-213ENST00000620219 ZNF654Q8IZM8 581 aa18.22■□□□□ 0.51
CPSF1-213ENST00000620219 ZNF512BQ96KM6 892 aaPredicted RBP18.22■□□□□ 0.51
CPSF1-213ENST00000620219 POLLQ9UGP5 575 aa18.22■□□□□ 0.51
CPSF1-213ENST00000620219 RFX7Q2KHR2 1363 aa18.22■□□□□ 0.51
CPSF1-213ENST00000620219 PLSCR1O15162 318 aa18.22■□□□□ 0.51
CPSF1-213ENST00000620219 PDIA4P13667 645 aaKnown RBP18.22■□□□□ 0.51
CPSF1-213ENST00000620219 APOA5Q6Q788 366 aa18.22■□□□□ 0.51
CPSF1-213ENST00000620219 TEKT1Q969V4 418 aa18.22■□□□□ 0.51
CPSF1-213ENST00000620219 AIFM3Q96NN9 605 aa18.22■□□□□ 0.51
CPSF1-213ENST00000620219 KCNJ14Q9UNX9 436 aa18.22■□□□□ 0.51
CPSF1-213ENST00000620219 SOGA3Q5TF21 947 aa18.21■□□□□ 0.51
CPSF1-213ENST00000620219 SLC44A5Q8NCS7 719 aa18.21■□□□□ 0.51
CPSF1-213ENST00000620219 FTOQ9C0B1 505 aaKnown RBP eCLIP18.21■□□□□ 0.51
CPSF1-213ENST00000620219 ZSCAN16Q9H4T2 348 aaPredicted RBP18.21■□□□□ 0.51
CPSF1-213ENST00000620219 KIF5BP33176 963 aa18.21■□□□□ 0.51
CPSF1-213ENST00000620219 UBE2HP62256 183 aa18.21■□□□□ 0.51
CPSF1-213ENST00000620219 AOC3Q16853 763 aa18.21■□□□□ 0.51
CPSF1-213ENST00000620219 NSUN7Q8NE18 718 aaKnown RBP18.21■□□□□ 0.51
CPSF1-213ENST00000620219 ST3GAL1Q11201 340 aa18.2■□□□□ 0.5
CPSF1-213ENST00000620219 ARPP21Q9UBL0 812 aaPredicted RBP18.2■□□□□ 0.5
CPSF1-213ENST00000620219 PLCH1Q4KWH8 1693 aa18.2■□□□□ 0.5
CPSF1-213ENST00000620219 TTC6Q86TZ1 520 aa18.2■□□□□ 0.5
CPSF1-213ENST00000620219 SP8Q8IXZ3 490 aa18.2■□□□□ 0.5
CPSF1-213ENST00000620219 FSIP1Q8NA03 581 aa18.2■□□□□ 0.5
CPSF1-213ENST00000620219 CRAMP1Q96RY5 1269 aa18.2■□□□□ 0.5
CPSF1-213ENST00000620219 ATP8A2Q9NTI2 1148 aa18.2■□□□□ 0.5
CPSF1-213ENST00000620219 RPAP1Q9BWH6 1393 aaPredicted RBP18.2■□□□□ 0.5
CPSF1-213ENST00000620219 GOLGA6L19H0YKK7 550 aa18.2■□□□□ 0.5
CPSF1-213ENST00000620219 NMT2O60551 498 aa18.2■□□□□ 0.5
CPSF1-213ENST00000620219 ZSCAN10Q96SZ4 725 aaPredicted RBP18.2■□□□□ 0.5
CPSF1-213ENST00000620219 LLPHQ9BRT6 129 aaKnown RBP18.19■□□□□ 0.5
CPSF1-213ENST00000620219 DCP1AQ9NPI6 582 aaPredicted RBP18.19■□□□□ 0.5
CPSF1-213ENST00000620219 R3HDM1Q15032 1099 aaKnown RBP18.19■□□□□ 0.5
CPSF1-213ENST00000620219 JMYQ8N9B5 988 aa18.19■□□□□ 0.5
CPSF1-213ENST00000620219 SEC63Q9UGP8 760 aaKnown RBP18.19■□□□□ 0.5
CPSF1-213ENST00000620219 ATP6V0A2Q9Y487 856 aa18.19■□□□□ 0.5
CPSF1-213ENST00000620219 HEATR3Q7Z4Q2 680 aa18.19■□□□□ 0.5
CPSF1-213ENST00000620219 TTLL6Q8N841 843 aa18.19■□□□□ 0.5
CPSF1-213ENST00000620219 ATRNO75882 1429 aa18.19■□□□□ 0.5
CPSF1-213ENST00000620219 TMC4Q7Z404 712 aa18.19■□□□□ 0.5
CPSF1-213ENST00000620219 MB21D2Q8IYB1 491 aaPredicted RBP18.19■□□□□ 0.5
CPSF1-213ENST00000620219 SENP2Q9HC62 589 aa18.19■□□□□ 0.5
CPSF1-213ENST00000620219 COA1Q9GZY4 146 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms