RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 FKBP1CQ5VVH2 108 aa13.44□□□□□ -0.26
LIG1-211ENST00000596457 FAM83AQ86UY5 434 aa13.44□□□□□ -0.26
LIG1-211ENST00000596457 SMC5Q8IY18 1101 aa13.44□□□□□ -0.26
LIG1-211ENST00000596457 REM2Q8IYK8 340 aaPredicted RBP13.44□□□□□ -0.26
LIG1-211ENST00000596457 TEPSINQ96N21 525 aa13.44□□□□□ -0.26
LIG1-211ENST00000596457 MYH7P12883 1935 aa13.44□□□□□ -0.26
LIG1-211ENST00000596457 TTC41PQ6P2S7 1318 aa13.43□□□□□ -0.26
LIG1-211ENST00000596457 SSC5DA1L4H1 1573 aa13.43□□□□□ -0.26
LIG1-211ENST00000596457 ERC2O15083 957 aa13.43□□□□□ -0.26
LIG1-211ENST00000596457 USP2O75604 605 aaPredicted RBP13.43□□□□□ -0.26
LIG1-211ENST00000596457 PDE6AP16499 860 aa13.43□□□□□ -0.26
LIG1-211ENST00000596457 IREB2P48200 963 aaKnown RBP13.43□□□□□ -0.26
LIG1-211ENST00000596457 RHBDL3P58872 404 aa13.43□□□□□ -0.26
LIG1-211ENST00000596457 SLFNL1Q499Z3 407 aa13.43□□□□□ -0.26
LIG1-211ENST00000596457 MIGA2Q7L4E1 593 aa13.43□□□□□ -0.26
LIG1-211ENST00000596457 CHD1LQ86WJ1 897 aa13.43□□□□□ -0.26
LIG1-211ENST00000596457 TGFBRAP1Q8WUH2 860 aa13.43□□□□□ -0.26
LIG1-211ENST00000596457 CDK5RAP2Q96SN8 1893 aa13.43□□□□□ -0.26
LIG1-211ENST00000596457 DDX4Q9NQI0 724 aaKnown RBP13.43□□□□□ -0.26
LIG1-211ENST00000596457 ZNF532Q9HCE3 1301 aa13.42□□□□□ -0.26
LIG1-211ENST00000596457 WDHD1O75717 1129 aaPredicted RBP13.42□□□□□ -0.26
LIG1-211ENST00000596457 NEFLP07196 543 aa13.42□□□□□ -0.26
LIG1-211ENST00000596457 PLCG2P16885 1265 aa13.42□□□□□ -0.26
LIG1-211ENST00000596457 MKRN3Q13064 507 aaKnown RBP13.42□□□□□ -0.26
LIG1-211ENST00000596457 IDI2Q9BXS1 227 aa13.42□□□□□ -0.26
LIG1-211ENST00000596457 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.42□□□□□ -0.263e-8■□□□□ 10.4
LIG1-211ENST00000596457 MAGEB6P1A0A0J9YX57 407 aa13.41□□□□□ -0.26
LIG1-211ENST00000596457 ENTPD3O75355 529 aa13.41□□□□□ -0.26
LIG1-211ENST00000596457 GLRX3O76003 335 aaKnown RBP13.41□□□□□ -0.26
LIG1-211ENST00000596457 CHGBP05060 677 aa13.41□□□□□ -0.26
LIG1-211ENST00000596457 USP5P45974 858 aa13.41□□□□□ -0.26
LIG1-211ENST00000596457 NUCB1Q02818 461 aa13.41□□□□□ -0.26
LIG1-211ENST00000596457 PRPF38BQ5VTL8 546 aaKnown RBP13.41□□□□□ -0.26
LIG1-211ENST00000596457 ZSCAN25Q6NSZ9 544 aa13.41□□□□□ -0.26
LIG1-211ENST00000596457 MAPKAPK5Q8IW41 473 aa13.41□□□□□ -0.26
LIG1-211ENST00000596457 PI4K2BQ8TCG2 481 aa13.41□□□□□ -0.26
LIG1-211ENST00000596457 HOOK2Q96ED9 719 aa13.41□□□□□ -0.26
LIG1-211ENST00000596457 SLC10A4Q96EP9 437 aa13.41□□□□□ -0.26
LIG1-211ENST00000596457 DDTLA6NHG4 134 aaPredicted RBP13.4□□□□□ -0.26
LIG1-211ENST00000596457 IGSF3O75054 1194 aa13.4□□□□□ -0.26
LIG1-211ENST00000596457 ADD2P35612 726 aa13.4□□□□□ -0.26
LIG1-211ENST00000596457 PDE1AP54750 535 aa13.4□□□□□ -0.26
LIG1-211ENST00000596457 PPP4CP60510 307 aa13.4□□□□□ -0.26
LIG1-211ENST00000596457 SLC4A8Q2Y0W8 1093 aa13.4□□□□□ -0.26
LIG1-211ENST00000596457 DCAF15Q66K64 600 aa13.4□□□□□ -0.26
LIG1-211ENST00000596457 CLMNQ96JQ2 1002 aa13.4□□□□□ -0.26
LIG1-211ENST00000596457 CSRNP1Q96S65 589 aa13.4□□□□□ -0.26
LIG1-211ENST00000596457 ELP3Q9H9T3 547 aa13.4□□□□□ -0.26
LIG1-211ENST00000596457 SAP30BPQ9UHR5 308 aaKnown RBP13.4□□□□□ -0.26
LIG1-211ENST00000596457 FOCADQ5VW36 1801 aa13.4□□□□□ -0.26
LIG1-211ENST00000596457 MYH1P12882 1939 aa13.4□□□□□ -0.26
LIG1-211ENST00000596457 OTOFQ9HC10 1997 aa13.4□□□□□ -0.27
LIG1-211ENST00000596457 SLURP2P0DP57 97 aa13.39□□□□□ -0.27
LIG1-211ENST00000596457 SH3BP5LQ7L8J4 393 aa13.39□□□□□ -0.27
LIG1-211ENST00000596457 RASAL3Q86YV0 1011 aa13.39□□□□□ -0.27
LIG1-211ENST00000596457 ANKRD13AQ8IZ07 590 aa13.39□□□□□ -0.27
LIG1-211ENST00000596457 KBTBD3Q8NAB2 608 aa13.39□□□□□ -0.27
LIG1-211ENST00000596457 WRNIP1Q96S55 665 aa13.39□□□□□ -0.27
LIG1-211ENST00000596457 ZIC5Q96T25 663 aa13.39□□□□□ -0.27
LIG1-211ENST00000596457 FSD1Q9BTV5 496 aa13.39□□□□□ -0.27
LIG1-211ENST00000596457 ZNF341Q9BYN7 854 aa13.39□□□□□ -0.27
LIG1-211ENST00000596457 OSBPL5Q9H0X9 879 aaPredicted RBP13.39□□□□□ -0.27
LIG1-211ENST00000596457 ARMT1Q9H993 441 aa13.39□□□□□ -0.27
LIG1-211ENST00000596457 SALL3Q9BXA9 1300 aa13.39□□□□□ -0.27
LIG1-211ENST00000596457 RPAP1Q9BWH6 1393 aaPredicted RBP13.38□□□□□ -0.27
LIG1-211ENST00000596457 TCRBV5S4A2TA0A5A2 114 aa13.38□□□□□ -0.27
LIG1-211ENST00000596457 UNCXA6NJT0 531 aa13.38□□□□□ -0.27
LIG1-211ENST00000596457 FAM155AB1AL88 458 aaPredicted RBP13.38□□□□□ -0.27
LIG1-211ENST00000596457 TRIM6-TRIM34B2RNG4 842 aa13.38□□□□□ -0.27
LIG1-211ENST00000596457 SLC10A3P09131 477 aa13.38□□□□□ -0.27
LIG1-211ENST00000596457 MAP3K9P80192 1104 aa13.38□□□□□ -0.27
LIG1-211ENST00000596457 KIF23Q02241 960 aaPredicted RBP13.38□□□□□ -0.27
LIG1-211ENST00000596457 MAP3K11Q16584 847 aa13.38□□□□□ -0.27
LIG1-211ENST00000596457 LDLRAD1Q5T700 205 aa13.38□□□□□ -0.27
LIG1-211ENST00000596457 LCORLQ8N3X6 602 aa13.38□□□□□ -0.27
LIG1-211ENST00000596457 ZKSCAN4Q969J2 545 aaPredicted RBP13.38□□□□□ -0.27
LIG1-211ENST00000596457 RILPL2Q969X0 211 aa13.38□□□□□ -0.27
LIG1-211ENST00000596457 SAGE1Q9NXZ1 904 aa13.38□□□□□ -0.27
LIG1-211ENST00000596457 STAP2Q9UGK3 403 aa13.38□□□□□ -0.27
LIG1-211ENST00000596457 CSADQ9Y600 493 aa13.38□□□□□ -0.27
LIG1-211ENST00000596457 FLT1P17948 1338 aa13.38□□□□□ -0.27
LIG1-211ENST00000596457 RFX7Q2KHR2 1363 aa13.37□□□□□ -0.27
LIG1-211ENST00000596457 FAM196BA6NMK8 535 aa13.37□□□□□ -0.27
LIG1-211ENST00000596457 RNF113AO15541 343 aaKnown RBP13.37□□□□□ -0.27
LIG1-211ENST00000596457 MBD4O95243 580 aa13.37□□□□□ -0.27
LIG1-211ENST00000596457 CERS3Q8IU89 383 aa13.37□□□□□ -0.27
LIG1-211ENST00000596457 PLEKHM2Q8IWE5 1019 aa13.37□□□□□ -0.27
LIG1-211ENST00000596457 RIOK1Q9BRS2 568 aaKnown RBP13.37□□□□□ -0.27
LIG1-211ENST00000596457 TRIM34Q9BYJ4 488 aa13.37□□□□□ -0.27
LIG1-211ENST00000596457 CRNKL1Q9BZJ0 848 aaKnown RBP13.37□□□□□ -0.27
LIG1-211ENST00000596457 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.37□□□□□ -0.27
LIG1-211ENST00000596457 PALD1Q9ULE6 856 aa13.37□□□□□ -0.27
LIG1-211ENST00000596457 NAV1Q8NEY1 1877 aa13.36□□□□□ -0.27
LIG1-211ENST00000596457 INPP5BP32019 993 aa13.36□□□□□ -0.27
LIG1-211ENST00000596457 VGLL4Q14135 290 aa13.36□□□□□ -0.27
LIG1-211ENST00000596457 UBE3CQ15386 1083 aa13.36□□□□□ -0.27
LIG1-211ENST00000596457 TMED8Q6PL24 325 aaPredicted RBP13.36□□□□□ -0.27
LIG1-211ENST00000596457 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.36□□□□□ -0.27
LIG1-211ENST00000596457 CRACR2BQ8N4Y2 399 aaPredicted RBP13.36□□□□□ -0.27
LIG1-211ENST00000596457 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms