RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 FZD1Q9UP38 647 aa12.77□□□□□ -0.37
LIG1-210ENST00000596332 RPAP1Q9BWH6 1393 aaPredicted RBP12.77□□□□□ -0.37
LIG1-210ENST00000596332 CDK5RAP2Q96SN8 1893 aa12.76□□□□□ -0.37
LIG1-210ENST00000596332 MYO1BO43795 1136 aa12.76□□□□□ -0.37
LIG1-210ENST00000596332 BAG3O95817 575 aa12.76□□□□□ -0.37
LIG1-210ENST00000596332 TCP10Q12799 353 aa12.76□□□□□ -0.37
LIG1-210ENST00000596332 ZSCAN25Q6NSZ9 544 aa12.76□□□□□ -0.37
LIG1-210ENST00000596332 TEX11Q8IYF3 940 aa12.76□□□□□ -0.37
LIG1-210ENST00000596332 TGFBRAP1Q8WUH2 860 aa12.76□□□□□ -0.37
LIG1-210ENST00000596332 SDR42E1Q8WUS8 393 aa12.76□□□□□ -0.37
LIG1-210ENST00000596332 FLT1P17948 1338 aa12.76□□□□□ -0.37
LIG1-210ENST00000596332 MYH7P12883 1935 aa12.76□□□□□ -0.37
LIG1-210ENST00000596332 GPAA1O43292 621 aa12.75□□□□□ -0.37
LIG1-210ENST00000596332 C1QTNF8P60827 252 aa12.75□□□□□ -0.37
LIG1-210ENST00000596332 VPS53Q5VIR6 699 aa12.75□□□□□ -0.37
LIG1-210ENST00000596332 METTL16Q86W50 562 aaKnown RBP12.75□□□□□ -0.37
LIG1-210ENST00000596332 MAPKAPK5Q8IW41 473 aa12.75□□□□□ -0.37
LIG1-210ENST00000596332 SULF1Q8IWU6 871 aa12.75□□□□□ -0.37
LIG1-210ENST00000596332 OSBPL5Q9H0X9 879 aaPredicted RBP12.75□□□□□ -0.37
LIG1-210ENST00000596332 EPB41L4AQ9HCS5 686 aaPredicted RBP12.75□□□□□ -0.37
LIG1-210ENST00000596332 DCP1AQ9NPI6 582 aaPredicted RBP12.75□□□□□ -0.37
LIG1-210ENST00000596332 HELLSQ9NRZ9 838 aa12.75□□□□□ -0.37
LIG1-210ENST00000596332 PPP2R3BQ9Y5P8 575 aa12.75□□□□□ -0.37
LIG1-210ENST00000596332 SIPA1L1O43166 1804 aa12.74□□□□□ -0.37
LIG1-210ENST00000596332 COL2A1P02458 1487 aaPredicted RBP12.74□□□□□ -0.37
LIG1-210ENST00000596332 USP2O75604 605 aaPredicted RBP12.74□□□□□ -0.37
LIG1-210ENST00000596332 PLCG2P16885 1265 aa12.74□□□□□ -0.37
LIG1-210ENST00000596332 PICALMQ13492 652 aa12.74□□□□□ -0.37
LIG1-210ENST00000596332 RRP1BQ14684 758 aaKnown RBP12.74□□□□□ -0.37
LIG1-210ENST00000596332 MOB2Q70IA6 237 aa12.74□□□□□ -0.37
LIG1-210ENST00000596332 DNAJC18Q9H819 358 aa12.74□□□□□ -0.37
LIG1-210ENST00000596332 TACC3Q9Y6A5 838 aa12.74□□□□□ -0.37
LIG1-210ENST00000596332 FOCADQ5VW36 1801 aa12.74□□□□□ -0.37
LIG1-210ENST00000596332 DDX60LQ5H9U9 1706 aaKnown RBP12.74□□□□□ -0.37
LIG1-210ENST00000596332 PHF20L1A8MW92 1017 aa12.73□□□□□ -0.37
LIG1-210ENST00000596332 PLCD1P51178 756 aa12.73□□□□□ -0.37
LIG1-210ENST00000596332 MAP3K11Q16584 847 aa12.73□□□□□ -0.37
LIG1-210ENST00000596332 MCMDC2Q4G0Z9 681 aa12.73□□□□□ -0.37
LIG1-210ENST00000596332 RNF216Q9NWF9 866 aaPredicted RBP12.73□□□□□ -0.37
LIG1-210ENST00000596332 ZNF112Q9UJU3 913 aa12.73□□□□□ -0.37
LIG1-210ENST00000596332 PALD1Q9ULE6 856 aa12.73□□□□□ -0.37
LIG1-210ENST00000596332 CYP2D7A0A087X1C5 515 aa12.72□□□□□ -0.37
LIG1-210ENST00000596332 PATL2C9JE40 543 aaKnown RBP12.72□□□□□ -0.37
LIG1-210ENST00000596332 CELF2O95319 508 aaKnown RBP12.72□□□□□ -0.37
LIG1-210ENST00000596332 CYP2D6P10635 497 aa12.72□□□□□ -0.37
LIG1-210ENST00000596332 JAG1P78504 1218 aa12.72□□□□□ -0.37
LIG1-210ENST00000596332 HTRA3P83110 453 aa12.72□□□□□ -0.37
LIG1-210ENST00000596332 GABPAQ06546 454 aa12.72□□□□□ -0.37
LIG1-210ENST00000596332 TNFAIP1Q13829 316 aa12.72□□□□□ -0.37
LIG1-210ENST00000596332 LDLRAD1Q5T700 205 aa12.72□□□□□ -0.37
LIG1-210ENST00000596332 CTR9Q6PD62 1173 aa12.72□□□□□ -0.37
LIG1-210ENST00000596332 CWC27Q6UX04 472 aaKnown RBP12.72□□□□□ -0.37
LIG1-210ENST00000596332 CERS3Q8IU89 383 aa12.72□□□□□ -0.37
LIG1-210ENST00000596332 AIDAQ96BJ3 306 aa12.72□□□□□ -0.37
LIG1-210ENST00000596332 CRNKL1Q9BZJ0 848 aaKnown RBP12.72□□□□□ -0.37
LIG1-210ENST00000596332 PAPPA2Q9BXP8 1791 aa12.71□□□□□ -0.37
LIG1-210ENST00000596332 SGSM2O43147 1006 aa12.71□□□□□ -0.37
LIG1-210ENST00000596332 TBC1D12O60347 775 aa12.71□□□□□ -0.37
LIG1-210ENST00000596332 TNNI2P48788 182 aa12.71□□□□□ -0.37
LIG1-210ENST00000596332 APLP1P51693 650 aa12.71□□□□□ -0.37
LIG1-210ENST00000596332 MAPK8IP2Q13387 824 aaPredicted RBP12.71□□□□□ -0.37
LIG1-210ENST00000596332 C12orf60Q5U649 245 aa12.71□□□□□ -0.37
LIG1-210ENST00000596332 IFNL3Q8IZI9 196 aa12.71□□□□□ -0.37
LIG1-210ENST00000596332 ATP8A2Q9NTI2 1148 aa12.71□□□□□ -0.37
LIG1-210ENST00000596332 SAP30BPQ9UHR5 308 aaKnown RBP12.71□□□□□ -0.37
LIG1-210ENST00000596332 SLC4A4Q9Y6R1 1079 aa12.71□□□□□ -0.37
LIG1-210ENST00000596332 USP17L12C9JPN9 530 aa12.7□□□□□ -0.38
LIG1-210ENST00000596332 USP17L21D6R901 530 aa12.7□□□□□ -0.38
LIG1-210ENST00000596332 HSPD1P10809 573 aaKnown RBP12.7□□□□□ -0.38
LIG1-210ENST00000596332 PTH1RQ03431 593 aa12.7□□□□□ -0.38
LIG1-210ENST00000596332 ALX1Q15699 326 aa12.7□□□□□ -0.38
LIG1-210ENST00000596332 LRRFIP1Q32MZ4 808 aaKnown RBP12.7□□□□□ -0.38
LIG1-210ENST00000596332 SBK1Q52WX2 424 aa12.7□□□□□ -0.38
LIG1-210ENST00000596332 GIMAP6Q6P9H5 292 aa12.7□□□□□ -0.38
LIG1-210ENST00000596332 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.7□□□□□ -0.38
LIG1-210ENST00000596332 MIGA2Q7L4E1 593 aa12.7□□□□□ -0.38
LIG1-210ENST00000596332 SAPCD2Q86UD0 394 aa12.7□□□□□ -0.38
LIG1-210ENST00000596332 NKX2-3Q8TAU0 364 aa12.7□□□□□ -0.38
LIG1-210ENST00000596332 KLRG1Q96E93 195 aa12.7□□□□□ -0.38
LIG1-210ENST00000596332 NOL10Q9BSC4 688 aaKnown RBP12.7□□□□□ -0.38
LIG1-210ENST00000596332 GBA2Q9HCG7 927 aaPredicted RBP12.7□□□□□ -0.38
LIG1-210ENST00000596332 TMOD2Q9NZR1 351 aa12.7□□□□□ -0.38
LIG1-210ENST00000596332 CCDC171Q6TFL3 1326 aa12.69□□□□□ -0.38
LIG1-210ENST00000596332 TMEM88BA6NKF7 163 aa12.69□□□□□ -0.38
LIG1-210ENST00000596332 FAM196BA6NMK8 535 aa12.69□□□□□ -0.38
LIG1-210ENST00000596332 UBE2Q2LH0YL09 131 aa12.69□□□□□ -0.38
LIG1-210ENST00000596332 FGAP02671 866 aa12.69□□□□□ -0.38
LIG1-210ENST00000596332 USP5P45974 858 aa12.69□□□□□ -0.38
LIG1-210ENST00000596332 SHROOM1Q2M3G4 852 aaPredicted RBP12.69□□□□□ -0.38
LIG1-210ENST00000596332 SLC4A8Q2Y0W8 1093 aa12.69□□□□□ -0.38
LIG1-210ENST00000596332 SUPT20HL1Q3ZLR7 823 aa12.69□□□□□ -0.38
LIG1-210ENST00000596332 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.69□□□□□ -0.38
LIG1-210ENST00000596332 DYNLL2Q96FJ2 89 aa12.69□□□□□ -0.38
LIG1-210ENST00000596332 CSRNP1Q96S65 589 aa12.69□□□□□ -0.38
LIG1-210ENST00000596332 ESYT1Q9BSJ8 1104 aa12.69□□□□□ -0.38
LIG1-210ENST00000596332 NBPF3Q9H094 633 aa12.69□□□□□ -0.38
LIG1-210ENST00000596332 DHX36Q9H2U1 1008 aaKnown RBP12.69□□□□□ -0.38
LIG1-210ENST00000596332 TLL2Q9Y6L7 1015 aa12.69□□□□□ -0.38
LIG1-210ENST00000596332 TRPM7Q96QT4 1865 aa12.68□□□□□ -0.38
LIG1-210ENST00000596332 HIP1O00291 1037 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms