RNA–Protein interactions for RNA: ENST00000595242.3

SCAF1-202, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 463 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-202ENST00000595242 ZDHHC15Q96MV8 337 aa16■□□□□ 0.15
SCAF1-202ENST00000595242 GUCD1Q96NT3 240 aa16■□□□□ 0.15
SCAF1-202ENST00000595242 NBPF3Q9H094 633 aa16■□□□□ 0.15
SCAF1-202ENST00000595242 XRN2Q9H0D6 950 aaKnown RBP eCLIP16■□□□□ 0.15
SCAF1-202ENST00000595242 RPAP1Q9BWH6 1393 aaPredicted RBP16■□□□□ 0.15
SCAF1-202ENST00000595242 PHIPQ8WWQ0 1821 aa15.99■□□□□ 0.15
SCAF1-202ENST00000595242 UBE4AQ14139 1066 aa15.99■□□□□ 0.15
SCAF1-202ENST00000595242 CCDC57Q2TAC2 916 aa15.99■□□□□ 0.15
SCAF1-202ENST00000595242 TAF7LQ5H9L4 462 aa15.99■□□□□ 0.15
SCAF1-202ENST00000595242 LINS1Q8NG48 757 aa15.99■□□□□ 0.15
SCAF1-202ENST00000595242 ZNF112Q9UJU3 913 aa15.99■□□□□ 0.15
SCAF1-202ENST00000595242 IQSEC3Q9UPP2 1182 aaPredicted RBP15.99■□□□□ 0.15
SCAF1-202ENST00000595242 POTEB2H3BUK9 544 aa15.98■□□□□ 0.15
SCAF1-202ENST00000595242 CXCL11O14625 94 aa15.98■□□□□ 0.15
SCAF1-202ENST00000595242 SLC4A2P04920 1241 aa15.98■□□□□ 0.15
SCAF1-202ENST00000595242 CHAF1AQ13111 956 aaPredicted RBP15.98■□□□□ 0.15
SCAF1-202ENST00000595242 AAMPQ13685 434 aa15.98■□□□□ 0.15
SCAF1-202ENST00000595242 APOBEC3HQ6NTF7 200 aaKnown RBP15.98■□□□□ 0.15
SCAF1-202ENST00000595242 TBC1D22AQ8WUA7 517 aa15.98■□□□□ 0.15
SCAF1-202ENST00000595242 MUC3AQ02505 3323 aa15.97■□□□□ 0.15
SCAF1-202ENST00000595242 DOCK2Q92608 1830 aa15.97■□□□□ 0.15
SCAF1-202ENST00000595242 EXOSC9Q06265 439 aaKnown RBP15.97■□□□□ 0.15
SCAF1-202ENST00000595242 NOL9Q5SY16 702 aaKnown RBP15.97■□□□□ 0.15
SCAF1-202ENST00000595242 FAM109BQ6ICB4 259 aaPredicted RBP15.97■□□□□ 0.15
SCAF1-202ENST00000595242 LMBR1LQ6UX01 489 aa15.97■□□□□ 0.15
SCAF1-202ENST00000595242 FASTKD5Q7L8L6 764 aaKnown RBP15.97■□□□□ 0.15
SCAF1-202ENST00000595242 DNAAF4Q8WXU2 420 aa15.97■□□□□ 0.15
SCAF1-202ENST00000595242 TSR2Q969E8 191 aaKnown RBP15.97■□□□□ 0.15
SCAF1-202ENST00000595242 COA7Q96BR5 231 aa15.97■□□□□ 0.15
SCAF1-202ENST00000595242 FAM161BQ96MY7 647 aa15.97■□□□□ 0.15
SCAF1-202ENST00000595242 MRIQ9BWK5 157 aa15.97■□□□□ 0.15
SCAF1-202ENST00000595242 C11orf49Q9H6J7 331 aa15.97■□□□□ 0.15
SCAF1-202ENST00000595242 TTC28Q96AY4 2481 aa15.97■□□□□ 0.15
SCAF1-202ENST00000595242 VPS37DQ86XT2 251 aa15.96■□□□□ 0.15
SCAF1-202ENST00000595242 FAM151AQ8WW52 585 aa15.96■□□□□ 0.15
SCAF1-202ENST00000595242 CDH23Q9H251 3354 aa15.96■□□□□ 0.15
SCAF1-202ENST00000595242 A0A0G2JLL6 359 aaPredicted RBP15.95■□□□□ 0.14
SCAF1-202ENST00000595242 FRAT2O75474 233 aaPredicted RBP15.95■□□□□ 0.14
SCAF1-202ENST00000595242 FKBP5Q13451 457 aaPredicted RBP15.95■□□□□ 0.14
SCAF1-202ENST00000595242 ALDH1L2Q3SY69 923 aa15.95■□□□□ 0.14
SCAF1-202ENST00000595242 PRRT2Q7Z6L0 340 aaPredicted RBP15.95■□□□□ 0.14
SCAF1-202ENST00000595242 SMCR8Q8TEV9 937 aaPredicted RBP15.95■□□□□ 0.14
SCAF1-202ENST00000595242 SLC45A1Q9Y2W3 748 aa15.95■□□□□ 0.14
SCAF1-202ENST00000595242 PLXNB2O15031 1838 aa15.95■□□□□ 0.14
SCAF1-202ENST00000595242 DOCK1Q14185 1865 aa15.95■□□□□ 0.14
SCAF1-202ENST00000595242 TCP10Q12799 353 aa15.94■□□□□ 0.14
SCAF1-202ENST00000595242 FLIIQ13045 1269 aa15.94■□□□□ 0.14
SCAF1-202ENST00000595242 EPHA10Q5JZY3 1008 aa15.94■□□□□ 0.14
SCAF1-202ENST00000595242 HHIPL2Q6UWX4 724 aa15.94■□□□□ 0.14
SCAF1-202ENST00000595242 GADL1Q6ZQY3 521 aa15.94■□□□□ 0.14
SCAF1-202ENST00000595242 FBXO33Q7Z6M2 555 aa15.94■□□□□ 0.14
SCAF1-202ENST00000595242 ANKRD13CQ8N6S4 541 aa15.94■□□□□ 0.14
SCAF1-202ENST00000595242 HMX1Q9NP08 348 aaPredicted RBP15.94■□□□□ 0.14
SCAF1-202ENST00000595242 ZHX2Q9Y6X8 837 aa15.94■□□□□ 0.14
SCAF1-202ENST00000595242 MAST3O60307 1309 aa15.94■□□□□ 0.14
SCAF1-202ENST00000595242 COL2A1P02458 1487 aaPredicted RBP15.93■□□□□ 0.14
SCAF1-202ENST00000595242 HMGCRP04035 888 aa15.93■□□□□ 0.14
SCAF1-202ENST00000595242 MS4A1P11836 297 aa15.93■□□□□ 0.14
SCAF1-202ENST00000595242 MDM2Q00987 491 aaPredicted RBP15.93■□□□□ 0.14
SCAF1-202ENST00000595242 TRIM32Q13049 653 aa15.92■□□□□ 0.14
SCAF1-202ENST00000595242 TWISTNBQ3B726 338 aaPredicted RBP15.92■□□□□ 0.14
SCAF1-202ENST00000595242 PUS3Q9BZE2 481 aaKnown RBP15.92■□□□□ 0.14
SCAF1-202ENST00000595242 OGDHLQ9ULD0 1010 aa15.92■□□□□ 0.14
SCAF1-202ENST00000595242 AFG3L2Q9Y4W6 797 aa15.92■□□□□ 0.14
SCAF1-202ENST00000595242 PFASO15067 1338 aa15.92■□□□□ 0.14
SCAF1-202ENST00000595242 KIF16BQ96L93 1317 aa15.92■□□□□ 0.14
SCAF1-202ENST00000595242 PTPRAP18433 802 aa15.91■□□□□ 0.14
SCAF1-202ENST00000595242 COL9A1P20849 921 aa15.91■□□□□ 0.14
SCAF1-202ENST00000595242 CAVIN4Q5BKX8 364 aa15.91■□□□□ 0.14
SCAF1-202ENST00000595242 ZNF697Q5TEC3 545 aa15.91■□□□□ 0.14
SCAF1-202ENST00000595242 ZKSCAN2Q63HK3 967 aa15.91■□□□□ 0.14
SCAF1-202ENST00000595242 CENPQQ7L2Z9 268 aaPredicted RBP15.91■□□□□ 0.14
SCAF1-202ENST00000595242 PICK1Q9NRD5 415 aa15.91■□□□□ 0.14
SCAF1-202ENST00000595242 SUGT1Q9Y2Z0 365 aa15.91■□□□□ 0.14
SCAF1-202ENST00000595242 MYH2Q9UKX2 1941 aa15.91■□□□□ 0.14
SCAF1-202ENST00000595242 FRMPD3Q5JV73 1810 aa15.91■□□□□ 0.14
SCAF1-202ENST00000595242 NFIAQ12857 509 aa15.9■□□□□ 0.14
SCAF1-202ENST00000595242 SCYL3Q8IZE3 742 aa15.9■□□□□ 0.14
SCAF1-202ENST00000595242 SSH1Q8WYL5 1049 aa15.9■□□□□ 0.14
SCAF1-202ENST00000595242 CDX2Q99626 313 aaPredicted RBP15.9■□□□□ 0.14
SCAF1-202ENST00000595242 PHF20L1A8MW92 1017 aa15.89■□□□□ 0.13
SCAF1-202ENST00000595242 FAM110CQ1W6H9 321 aa15.89■□□□□ 0.13
SCAF1-202ENST00000595242 CDC42EP5Q6NZY7 148 aa15.89■□□□□ 0.13
SCAF1-202ENST00000595242 MAFAQ8NHW3 353 aaPredicted RBP15.89■□□□□ 0.13
SCAF1-202ENST00000595242 SMC4Q9NTJ3 1288 aa15.89■□□□□ 0.13
SCAF1-202ENST00000595242 MROH5Q6ZUA9 1318 aa15.89■□□□□ 0.13
SCAF1-202ENST00000595242 ATAD5Q96QE3 1844 aa15.89■□□□□ 0.13
SCAF1-202ENST00000595242 PANK1Q8TE04 598 aa15.88■□□□□ 0.13
SCAF1-202ENST00000595242 SYMPKQ92797 1274 aaKnown RBP15.88■□□□□ 0.13
SCAF1-202ENST00000595242 CLUAP1Q96AJ1 413 aa15.88■□□□□ 0.13
SCAF1-202ENST00000595242 FAM198AQ9UFP1 575 aa15.88■□□□□ 0.13
SCAF1-202ENST00000595242 GJD2Q9UKL4 321 aa15.88■□□□□ 0.13
SCAF1-202ENST00000595242 AGTPBP1Q9UPW5 1226 aa15.88■□□□□ 0.13
SCAF1-202ENST00000595242 LOC285556D6RIA3 1793 aa15.87■□□□□ 0.13
SCAF1-202ENST00000595242 MAST2Q6P0Q8 1798 aa15.87■□□□□ 0.13
SCAF1-202ENST00000595242 TRIM75PA6NK02 468 aa15.87■□□□□ 0.13
SCAF1-202ENST00000595242 F6X3S4 739 aa15.87■□□□□ 0.13
SCAF1-202ENST00000595242 GRM8O00222 908 aa15.87■□□□□ 0.13
SCAF1-202ENST00000595242 VAMP4O75379 141 aa15.87■□□□□ 0.13
SCAF1-202ENST00000595242 COL6A1P12109 1028 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms