RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 PPP2R2CQ9Y2T4 447 aa17.08■□□□□ 0.32
SMARCA4-219ENST00000592604 URI1O94763 535 aaPredicted RBP17.07■□□□□ 0.32
SMARCA4-219ENST00000592604 TCIRG1Q13488 830 aa17.07■□□□□ 0.32
SMARCA4-219ENST00000592604 NKX2-3Q8TAU0 364 aa17.07■□□□□ 0.32
SMARCA4-219ENST00000592604 TMEM87BQ96K49 555 aa17.07■□□□□ 0.32
SMARCA4-219ENST00000592604 GOLGA6L9A6NEM1 432 aa17.07■□□□□ 0.32
SMARCA4-219ENST00000592604 BMP6P22004 513 aa17.07■□□□□ 0.32
SMARCA4-219ENST00000592604 PI16Q6UXB8 463 aa17.07■□□□□ 0.32
SMARCA4-219ENST00000592604 CNNM3Q8NE01 707 aa17.07■□□□□ 0.32
SMARCA4-219ENST00000592604 ZNF512BQ96KM6 892 aaPredicted RBP17.07■□□□□ 0.32
SMARCA4-219ENST00000592604 GNL2Q13823 731 aaKnown RBP17.07■□□□□ 0.32
SMARCA4-219ENST00000592604 CHRNA2Q15822 529 aa17.07■□□□□ 0.32
SMARCA4-219ENST00000592604 SGMS1Q86VZ5 419 aa17.07■□□□□ 0.32
SMARCA4-219ENST00000592604 IGDCC4Q8TDY8 1250 aa17.07■□□□□ 0.32
SMARCA4-219ENST00000592604 CARD6Q9BX69 1037 aa17.07■□□□□ 0.32
SMARCA4-219ENST00000592604 PHKBQ93100 1093 aa17.06■□□□□ 0.32
SMARCA4-219ENST00000592604 STX10O60499 249 aa17.06■□□□□ 0.32
SMARCA4-219ENST00000592604 CYP2C19P33261 490 aa17.06■□□□□ 0.32
SMARCA4-219ENST00000592604 IARSP41252 1262 aaKnown RBP17.06■□□□□ 0.32
SMARCA4-219ENST00000592604 MCAMP43121 646 aa17.06■□□□□ 0.32
SMARCA4-219ENST00000592604 PDE4BQ07343 736 aa17.06■□□□□ 0.32
SMARCA4-219ENST00000592604 UBE3CQ15386 1083 aa17.06■□□□□ 0.32
SMARCA4-219ENST00000592604 FAM217BQ9NTX9 383 aaPredicted RBP17.06■□□□□ 0.32
SMARCA4-219ENST00000592604 PAPPAQ13219 1627 aa17.06■□□□□ 0.32
SMARCA4-219ENST00000592604 ZBTB43O43298 467 aa17.05■□□□□ 0.32
SMARCA4-219ENST00000592604 PCCAP05165 728 aaPredicted RBP17.05■□□□□ 0.32
SMARCA4-219ENST00000592604 MAP3K9P80192 1104 aa17.05■□□□□ 0.32
SMARCA4-219ENST00000592604 GOLGA8FQ08AF8 430 aa17.05■□□□□ 0.32
SMARCA4-219ENST00000592604 GOLGA8DPQ0D2H9 430 aa17.05■□□□□ 0.32
SMARCA4-219ENST00000592604 NT5DC1Q5TFE4 455 aa17.05■□□□□ 0.32
SMARCA4-219ENST00000592604 KRI1Q8N9T8 703 aaKnown RBP17.05■□□□□ 0.32
SMARCA4-219ENST00000592604 BAG1Q99933 345 aaPredicted RBP17.05■□□□□ 0.32
SMARCA4-219ENST00000592604 STK36Q9NRP7 1315 aa17.05■□□□□ 0.32
SMARCA4-219ENST00000592604 RANBP6O60518 1105 aaKnown RBP17.05■□□□□ 0.32
SMARCA4-219ENST00000592604 ZNF18P17022 549 aa17.05■□□□□ 0.32
SMARCA4-219ENST00000592604 RXRAP19793 462 aa17.05■□□□□ 0.32
SMARCA4-219ENST00000592604 TRIM29Q14134 588 aa17.05■□□□□ 0.32
SMARCA4-219ENST00000592604 UBXN6Q9BZV1 441 aa17.05■□□□□ 0.32
SMARCA4-219ENST00000592604 SENP2Q9HC62 589 aa17.05■□□□□ 0.32
SMARCA4-219ENST00000592604 HOOK1Q9UJC3 728 aaKnown RBP17.05■□□□□ 0.32
SMARCA4-219ENST00000592604 IFIT5Q13325 482 aaKnown RBP17.04■□□□□ 0.32
SMARCA4-219ENST00000592604 MAPK8IP2Q13387 824 aaPredicted RBP17.04■□□□□ 0.32
SMARCA4-219ENST00000592604 TTF1Q15361 905 aaPredicted RBP17.04■□□□□ 0.32
SMARCA4-219ENST00000592604 RIC1Q4ADV7 1423 aa17.04■□□□□ 0.32
SMARCA4-219ENST00000592604 CABLES1Q8TDN4 633 aa17.04■□□□□ 0.32
SMARCA4-219ENST00000592604 RIPOR2Q9Y4F9 1068 aa17.04■□□□□ 0.32
SMARCA4-219ENST00000592604 UBN2Q6ZU65 1347 aa17.04■□□□□ 0.32
SMARCA4-219ENST00000592604 PCDH11XQ9BZA7 1347 aa17.04■□□□□ 0.32
SMARCA4-219ENST00000592604 PCDH11YQ9BZA8 1340 aa17.04■□□□□ 0.32
SMARCA4-219ENST00000592604 SLC9C2Q5TAH2 1124 aa17.04■□□□□ 0.32
SMARCA4-219ENST00000592604 TC2NQ8N9U0 490 aa17.04■□□□□ 0.32
SMARCA4-219ENST00000592604 LY9Q9HBG7 655 aa17.04■□□□□ 0.32
SMARCA4-219ENST00000592604 SARSP49591 514 aaKnown RBP17.03■□□□□ 0.32
SMARCA4-219ENST00000592604 MICU3Q86XE3 530 aa17.03■□□□□ 0.32
SMARCA4-219ENST00000592604 ENOX1Q8TC92 643 aaKnown RBP17.03■□□□□ 0.32
SMARCA4-219ENST00000592604 B4E1Z4 1266 aa17.03■□□□□ 0.32
SMARCA4-219ENST00000592604 LIFRP42702 1097 aa17.03■□□□□ 0.32
SMARCA4-219ENST00000592604 NKX1-1Q15270 411 aaPredicted RBP17.03■□□□□ 0.32
SMARCA4-219ENST00000592604 ALX1Q15699 326 aa17.03■□□□□ 0.32
SMARCA4-219ENST00000592604 STK11IPQ8N1F8 1099 aa17.03■□□□□ 0.32
SMARCA4-219ENST00000592604 GPR161Q8N6U8 529 aaKnown RBP17.03■□□□□ 0.32
SMARCA4-219ENST00000592604 MLKLQ8NB16 471 aa17.03■□□□□ 0.32
SMARCA4-219ENST00000592604 ZCRB1Q8TBF4 217 aaKnown RBP17.03■□□□□ 0.32
SMARCA4-219ENST00000592604 MAN1B1Q9UKM7 699 aa17.03■□□□□ 0.32
SMARCA4-219ENST00000592604 TNS2Q63HR2 1409 aa17.03■□□□□ 0.32
SMARCA4-219ENST00000592604 GOLGA8AA7E2F4 631 aa17.03■□□□□ 0.32
SMARCA4-219ENST00000592604 FOXN1O15353 648 aa17.03■□□□□ 0.32
SMARCA4-219ENST00000592604 CASQ1P31415 396 aa17.03■□□□□ 0.32
SMARCA4-219ENST00000592604 SPECC1LQ69YQ0 1117 aa17.03■□□□□ 0.32
SMARCA4-219ENST00000592604 CALCOCO1Q9P1Z2 691 aa17.03■□□□□ 0.32
SMARCA4-219ENST00000592604 MYO5AQ9Y4I1 1855 aaKnown RBP17.03■□□□□ 0.32
SMARCA4-219ENST00000592604 RSRC2Q7L4I2 434 aaKnown RBP17.02■□□□□ 0.32
SMARCA4-219ENST00000592604 NOSTRINQ8IVI9 506 aa17.02■□□□□ 0.32
SMARCA4-219ENST00000592604 ZBTB38Q8NAP3 1195 aaPredicted RBP17.02■□□□□ 0.32
SMARCA4-219ENST00000592604 ZKSCAN7Q9P0L1 754 aaPredicted RBP17.02■□□□□ 0.32
SMARCA4-219ENST00000592604 MRFAP1Q9Y605 127 aa17.02■□□□□ 0.32
SMARCA4-219ENST00000592604 PTPREP23469 700 aa17.02■□□□□ 0.31
SMARCA4-219ENST00000592604 SSRP1Q08945 709 aaKnown RBP17.02■□□□□ 0.31
SMARCA4-219ENST00000592604 POSTNQ15063 836 aa17.02■□□□□ 0.31
SMARCA4-219ENST00000592604 PTPN21Q16825 1174 aa17.02■□□□□ 0.31
SMARCA4-219ENST00000592604 DDX17Q92841 729 aaKnown RBP17.02■□□□□ 0.31
SMARCA4-219ENST00000592604 FAM89AQ96GI7 184 aa17.02■□□□□ 0.31
SMARCA4-219ENST00000592604 WDR24Q96S15 920 aa17.02■□□□□ 0.31
SMARCA4-219ENST00000592604 DACH1Q9UI36 760 aa17.02■□□□□ 0.31
SMARCA4-219ENST00000592604 FMNL1O95466 1100 aaPredicted RBP17.01■□□□□ 0.31
SMARCA4-219ENST00000592604 TOB1P50616 345 aaPredicted RBP17.01■□□□□ 0.31
SMARCA4-219ENST00000592604 GNG11P61952 73 aa17.01■□□□□ 0.31
SMARCA4-219ENST00000592604 MORC3Q14149 939 aa17.01■□□□□ 0.31
SMARCA4-219ENST00000592604 METTL24Q5JXM2 366 aa17.01■□□□□ 0.31
SMARCA4-219ENST00000592604 TRIML1Q8N9V2 468 aa17.01■□□□□ 0.31
SMARCA4-219ENST00000592604 WASF1Q92558 559 aa17.01■□□□□ 0.31
SMARCA4-219ENST00000592604 CCDC85AQ96PX6 553 aaPredicted RBP17.01■□□□□ 0.31
SMARCA4-219ENST00000592604 PIH1D3Q9NQM4 214 aaKnown RBP17.01■□□□□ 0.31
SMARCA4-219ENST00000592604 NFE2L3Q9Y4A8 694 aa17.01■□□□□ 0.31
SMARCA4-219ENST00000592604 NID2Q14112 1375 aa17.01■□□□□ 0.31
SMARCA4-219ENST00000592604 APPP05067 770 aa17.01■□□□□ 0.31
SMARCA4-219ENST00000592604 IFNAR1P17181 557 aa17.01■□□□□ 0.31
SMARCA4-219ENST00000592604 FMR1Q06787 632 aaKnown RBP eCLIP17.01■□□□□ 0.313e-7■■■□□ 18.3
SMARCA4-219ENST00000592604 NFXL1Q6ZNB6 911 aa17.01■□□□□ 0.31
SMARCA4-219ENST00000592604 KIFC2Q96AC6 838 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms