RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 CCL15Q16663 113 aa13.41□□□□□ -0.26
LIG3-214ENST00000592244 PI16Q6UXB8 463 aa13.41□□□□□ -0.26
LIG3-214ENST00000592244 ZKSCAN4Q969J2 545 aaPredicted RBP13.41□□□□□ -0.26
LIG3-214ENST00000592244 CCDC8Q9H0W5 538 aaPredicted RBP13.41□□□□□ -0.26
LIG3-214ENST00000592244 ZCCHC17Q9NP64 241 aaKnown RBP13.41□□□□□ -0.26
LIG3-214ENST00000592244 SNRKQ9NRH2 765 aa13.41□□□□□ -0.26
LIG3-214ENST00000592244 DBNLQ9UJU6 430 aaKnown RBP13.41□□□□□ -0.26
LIG3-214ENST00000592244 AKAP11Q9UKA4 1901 aa13.41□□□□□ -0.26
LIG3-214ENST00000592244 MYH13Q9UKX3 1938 aa13.41□□□□□ -0.26
LIG3-214ENST00000592244 GJA5P36382 358 aa13.4□□□□□ -0.26
LIG3-214ENST00000592244 TTF1Q15361 905 aaPredicted RBP13.4□□□□□ -0.26
LIG3-214ENST00000592244 TEX11Q8IYF3 940 aa13.4□□□□□ -0.26
LIG3-214ENST00000592244 RHPN1Q8TCX5 695 aa13.4□□□□□ -0.26
LIG3-214ENST00000592244 EAF2Q96CJ1 260 aaPredicted RBP13.4□□□□□ -0.26
LIG3-214ENST00000592244 ERO1AQ96HE7 468 aa13.4□□□□□ -0.26
LIG3-214ENST00000592244 ZFYVE28Q9HCC9 887 aa13.4□□□□□ -0.26
LIG3-214ENST00000592244 ZNF112Q9UJU3 913 aa13.4□□□□□ -0.26
LIG3-214ENST00000592244 SNCAIPQ9Y6H5 919 aa13.4□□□□□ -0.26
LIG3-214ENST00000592244 IGF2BP3O00425 579 aaKnown RBP eCLIP13.39□□□□□ -0.27
LIG3-214ENST00000592244 CYP2E1P05181 493 aaPredicted RBP13.39□□□□□ -0.27
LIG3-214ENST00000592244 ZAP70P43403 619 aa13.39□□□□□ -0.27
LIG3-214ENST00000592244 MAP3K12Q12852 859 aa13.39□□□□□ -0.27
LIG3-214ENST00000592244 NOL9Q5SY16 702 aaKnown RBP13.39□□□□□ -0.27
LIG3-214ENST00000592244 MS4A4AQ96JQ5 239 aa13.39□□□□□ -0.27
LIG3-214ENST00000592244 DHX36Q9H2U1 1008 aaKnown RBP13.39□□□□□ -0.27
LIG3-214ENST00000592244 APBB1O00213 710 aa13.38□□□□□ -0.27
LIG3-214ENST00000592244 IRF6O14896 467 aa13.38□□□□□ -0.27
LIG3-214ENST00000592244 CTNND1O60716 968 aaKnown RBP13.38□□□□□ -0.27
LIG3-214ENST00000592244 IDH1O75874 414 aaKnown RBP13.38□□□□□ -0.27
LIG3-214ENST00000592244 INPP5BP32019 993 aa13.38□□□□□ -0.27
LIG3-214ENST00000592244 RHBDL3P58872 404 aa13.38□□□□□ -0.27
LIG3-214ENST00000592244 CRHR2Q13324 411 aa13.38□□□□□ -0.27
LIG3-214ENST00000592244 TAF1CQ15572 869 aaPredicted RBP13.38□□□□□ -0.27
LIG3-214ENST00000592244 CNKSR2Q8WXI2 1034 aa13.38□□□□□ -0.27
LIG3-214ENST00000592244 BRI3BPQ8WY22 251 aa13.38□□□□□ -0.27
LIG3-214ENST00000592244 TRIM34Q9BYJ4 488 aa13.38□□□□□ -0.27
LIG3-214ENST00000592244 IL1RAPL2Q9NP60 686 aa13.38□□□□□ -0.27
LIG3-214ENST00000592244 RFX7Q2KHR2 1363 aa13.37□□□□□ -0.27
LIG3-214ENST00000592244 CXCL11O14625 94 aa13.37□□□□□ -0.27
LIG3-214ENST00000592244 TBC1D12O60347 775 aa13.37□□□□□ -0.27
LIG3-214ENST00000592244 PPP4CP60510 307 aa13.37□□□□□ -0.27
LIG3-214ENST00000592244 ZFPM1Q8IX07 1006 aa13.37□□□□□ -0.27
LIG3-214ENST00000592244 SCYL3Q8IZE3 742 aa13.37□□□□□ -0.27
LIG3-214ENST00000592244 OSBPL5Q9H0X9 879 aaPredicted RBP13.37□□□□□ -0.27
LIG3-214ENST00000592244 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.37□□□□□ -0.27
LIG3-214ENST00000592244 AATFQ9NY61 560 aaKnown RBP eCLIP13.37□□□□□ -0.27
LIG3-214ENST00000592244 TLR7Q9NYK1 1049 aaKnown RBP13.37□□□□□ -0.27
LIG3-214ENST00000592244 HERC5Q9UII4 1024 aaKnown RBP13.37□□□□□ -0.27
LIG3-214ENST00000592244 ATRNL1Q5VV63 1379 aa13.36□□□□□ -0.27
LIG3-214ENST00000592244 DDTLA6NHG4 134 aaPredicted RBP13.36□□□□□ -0.27
LIG3-214ENST00000592244 CYP7A1P22680 504 aa13.36□□□□□ -0.27
LIG3-214ENST00000592244 SP3Q02447 781 aa13.36□□□□□ -0.27
LIG3-214ENST00000592244 MAP3K10Q02779 954 aa13.36□□□□□ -0.27
LIG3-214ENST00000592244 KIF22Q14807 665 aa13.36□□□□□ -0.27
LIG3-214ENST00000592244 FBXO46Q6PJ61 603 aaPredicted RBP13.36□□□□□ -0.27
LIG3-214ENST00000592244 FASTKD5Q7L8L6 764 aaKnown RBP13.36□□□□□ -0.27
LIG3-214ENST00000592244 ZNF384Q8TF68 577 aa13.36□□□□□ -0.27
LIG3-214ENST00000592244 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.36□□□□□ -0.27
LIG3-214ENST00000592244 PTPN18Q99952 460 aa13.36□□□□□ -0.27
LIG3-214ENST00000592244 TBC1D2Q9BYX2 928 aa13.36□□□□□ -0.27
LIG3-214ENST00000592244 DDX4Q9NQI0 724 aaKnown RBP13.36□□□□□ -0.27
LIG3-214ENST00000592244 PI4KBQ9UBF8 816 aa13.36□□□□□ -0.27
LIG3-214ENST00000592244 KCNH4Q9UQ05 1017 aa13.36□□□□□ -0.27
LIG3-214ENST00000592244 CASP8AP2Q9UKL3 1982 aa13.36□□□□□ -0.27
LIG3-214ENST00000592244 COL2A1P02458 1487 aaPredicted RBP13.36□□□□□ -0.27
LIG3-214ENST00000592244 PHF20L1A8MW92 1017 aa13.35□□□□□ -0.27
LIG3-214ENST00000592244 HLA-DOAP06340 250 aa13.35□□□□□ -0.27
LIG3-214ENST00000592244 SH3BP5LQ7L8J4 393 aa13.35□□□□□ -0.27
LIG3-214ENST00000592244 ANKRD23Q86SG2 305 aa13.35□□□□□ -0.27
LIG3-214ENST00000592244 SH3RF3Q8TEJ3 882 aaPredicted RBP13.35□□□□□ -0.27
LIG3-214ENST00000592244 GPATCH3Q96I76 525 aa13.35□□□□□ -0.27
LIG3-214ENST00000592244 LRRCC1Q9C099 1032 aa13.35□□□□□ -0.27
LIG3-214ENST00000592244 BCL11AQ9H165 835 aa13.35□□□□□ -0.27
LIG3-214ENST00000592244 PIH1D3Q9NQM4 214 aaKnown RBP13.35□□□□□ -0.27
LIG3-214ENST00000592244 ZHX2Q9Y6X8 837 aa13.35□□□□□ -0.27
LIG3-214ENST00000592244 BTBD19C9JJ37 291 aa13.34□□□□□ -0.27
LIG3-214ENST00000592244 PTPRAP18433 802 aa13.34□□□□□ -0.27
LIG3-214ENST00000592244 USP5P45974 858 aa13.34□□□□□ -0.27
LIG3-214ENST00000592244 C20orf194Q5TEA3 1177 aa13.34□□□□□ -0.27
LIG3-214ENST00000592244 FOXP4Q8IVH2 680 aaPredicted RBP13.34□□□□□ -0.27
LIG3-214ENST00000592244 SIRT2Q8IXJ6 389 aa13.34□□□□□ -0.27
LIG3-214ENST00000592244 FAM43AQ8N2R8 423 aa13.34□□□□□ -0.27
LIG3-214ENST00000592244 CRACR2BQ8N4Y2 399 aaPredicted RBP13.34□□□□□ -0.27
LIG3-214ENST00000592244 MAGEB6Q8N7X4 407 aa13.34□□□□□ -0.27
LIG3-214ENST00000592244 TGFBRAP1Q8WUH2 860 aa13.34□□□□□ -0.27
LIG3-214ENST00000592244 R3HDMLQ9H3Y0 253 aa13.34□□□□□ -0.27
LIG3-214ENST00000592244 EFCC1Q9HA90 598 aa13.34□□□□□ -0.27
LIG3-214ENST00000592244 TRIM17Q9Y577 477 aa13.34□□□□□ -0.27
LIG3-214ENST00000592244 MYH2Q9UKX2 1941 aa13.34□□□□□ -0.27
LIG3-214ENST00000592244 TLR2O60603 784 aa13.33□□□□□ -0.28
LIG3-214ENST00000592244 PARK7Q99497 189 aaKnown RBP13.33□□□□□ -0.28
LIG3-214ENST00000592244 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.33□□□□□ -0.28
LIG3-214ENST00000592244 GINM1Q9NU53 330 aa13.33□□□□□ -0.28
LIG3-214ENST00000592244 HPS5Q9UPZ3 1129 aa13.33□□□□□ -0.28
LIG3-214ENST00000592244 PDHXO00330 501 aa13.32□□□□□ -0.28
LIG3-214ENST00000592244 GNRH1P01148 92 aa13.32□□□□□ -0.28
LIG3-214ENST00000592244 SLC9C2Q5TAH2 1124 aa13.32□□□□□ -0.28
LIG3-214ENST00000592244 MAPKAPK5Q8IW41 473 aa13.32□□□□□ -0.28
LIG3-214ENST00000592244 DNAJC2Q99543 621 aaKnown RBP13.32□□□□□ -0.28
LIG3-214ENST00000592244 AS3MTQ9HBK9 375 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms