RNA–Protein interactions for RNA: ENST00000589219.1

VPS25-202, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 2

Gene VPS25, Length 914 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-202ENST00000589219 L3MBTL3Q96JM7 780 aaPredicted RBP11.66□□□□□ -0.54
VPS25-202ENST00000589219 PSMD1Q99460 953 aa11.66□□□□□ -0.54
VPS25-202ENST00000589219 TMX4Q9H1E5 349 aaPredicted RBP11.66□□□□□ -0.54
VPS25-202ENST00000589219 DDX19AQ9NUU7 478 aaKnown RBP11.66□□□□□ -0.54
VPS25-202ENST00000589219 MAST2Q6P0Q8 1798 aa11.66□□□□□ -0.54
VPS25-202ENST00000589219 GOLGA8BA8MQT2 603 aa11.65□□□□□ -0.54
VPS25-202ENST00000589219 SEMA3EO15041 775 aa11.65□□□□□ -0.54
VPS25-202ENST00000589219 CTDNEP1O95476 244 aa11.65□□□□□ -0.54
VPS25-202ENST00000589219 IARSP41252 1262 aaKnown RBP11.65□□□□□ -0.54
VPS25-202ENST00000589219 TMED8Q6PL24 325 aaPredicted RBP11.65□□□□□ -0.54
VPS25-202ENST00000589219 FERMT3Q86UX7 667 aa11.65□□□□□ -0.54
VPS25-202ENST00000589219 HELBQ8NG08 1087 aaPredicted RBP11.65□□□□□ -0.54
VPS25-202ENST00000589219 LEO1Q8WVC0 666 aaPredicted RBP11.65□□□□□ -0.54
VPS25-202ENST00000589219 PDLIM2Q96JY6 352 aa11.65□□□□□ -0.54
VPS25-202ENST00000589219 TMEM87BQ96K49 555 aa11.65□□□□□ -0.54
VPS25-202ENST00000589219 SPATA32Q96LK8 384 aa11.65□□□□□ -0.54
VPS25-202ENST00000589219 NLRP3Q96P20 1036 aa11.65□□□□□ -0.54
VPS25-202ENST00000589219 CRAMP1Q96RY5 1269 aa11.65□□□□□ -0.54
VPS25-202ENST00000589219 STRBPQ96SI9 672 aaKnown RBP11.65□□□□□ -0.54
VPS25-202ENST00000589219 NACAP1Q9BZK3 213 aa11.65□□□□□ -0.54
VPS25-202ENST00000589219 CNNM2Q9H8M5 875 aa11.65□□□□□ -0.54
VPS25-202ENST00000589219 BSDC1Q9NW68 430 aaPredicted RBP11.65□□□□□ -0.54
VPS25-202ENST00000589219 CFAP45Q9UL16 551 aa11.65□□□□□ -0.54
VPS25-202ENST00000589219 NID2Q14112 1375 aa11.65□□□□□ -0.55
VPS25-202ENST00000589219 KLF18A0A0U1RQI7 1052 aa11.64□□□□□ -0.55
VPS25-202ENST00000589219 GOLGA6L4A6NEF3 574 aa11.64□□□□□ -0.55
VPS25-202ENST00000589219 IGSF3O75054 1194 aa11.64□□□□□ -0.55
VPS25-202ENST00000589219 CDKL5O76039 1030 aa11.64□□□□□ -0.55
VPS25-202ENST00000589219 MBD4O95243 580 aa11.64□□□□□ -0.55
VPS25-202ENST00000589219 ANTXR2P58335 489 aa11.64□□□□□ -0.55
VPS25-202ENST00000589219 OLFM4Q6UX06 510 aa11.64□□□□□ -0.55
VPS25-202ENST00000589219 LDHDQ86WU2 507 aa11.64□□□□□ -0.55
VPS25-202ENST00000589219 TBC1D10CQ8IV04 446 aa11.64□□□□□ -0.55
VPS25-202ENST00000589219 MAGEB6Q8N7X4 407 aa11.64□□□□□ -0.55
VPS25-202ENST00000589219 DDX11Q96FC9 970 aa11.64□□□□□ -0.55
VPS25-202ENST00000589219 ZNF396Q96N95 335 aaPredicted RBP11.64□□□□□ -0.55
VPS25-202ENST00000589219 MTA3Q9BTC8 594 aa11.64□□□□□ -0.55
VPS25-202ENST00000589219 NAPBQ9H115 298 aa11.64□□□□□ -0.55
VPS25-202ENST00000589219 TAF1DQ9H5J8 278 aaPredicted RBP11.64□□□□□ -0.55
VPS25-202ENST00000589219 NAP1L2Q9ULW6 460 aaPredicted RBP11.64□□□□□ -0.55
VPS25-202ENST00000589219 ANGEL1Q9UNK9 670 aaKnown RBP11.64□□□□□ -0.55
VPS25-202ENST00000589219 MYH15Q9Y2K3 1946 aa11.64□□□□□ -0.55
VPS25-202ENST00000589219 PCNTO95613 3336 aa11.63□□□□□ -0.55
VPS25-202ENST00000589219 DUOX1Q9NRD9 1551 aa11.63□□□□□ -0.55
VPS25-202ENST00000589219 COL4A1P02462 1669 aa11.63□□□□□ -0.55
VPS25-202ENST00000589219 PATL2C9JE40 543 aaKnown RBP11.63□□□□□ -0.55
VPS25-202ENST00000589219 FZD9O00144 591 aa11.63□□□□□ -0.55
VPS25-202ENST00000589219 SH2B2O14492 632 aaPredicted RBP11.63□□□□□ -0.55
VPS25-202ENST00000589219 PPEF1O14829 653 aaPredicted RBP11.63□□□□□ -0.55
VPS25-202ENST00000589219 APPP05067 770 aa11.63□□□□□ -0.55
VPS25-202ENST00000589219 EIF6P56537 245 aaKnown RBP11.63□□□□□ -0.55
VPS25-202ENST00000589219 CCT2P78371 535 aaKnown RBP11.63□□□□□ -0.55
VPS25-202ENST00000589219 CPLX2Q6PUV4 134 aaKnown RBP11.63□□□□□ -0.55
VPS25-202ENST00000589219 PNMA8AQ86V59 439 aaPredicted RBP11.63□□□□□ -0.55
VPS25-202ENST00000589219 GPC2Q8N158 579 aa11.63□□□□□ -0.55
VPS25-202ENST00000589219 KRT23Q9C075 422 aa11.63□□□□□ -0.55
VPS25-202ENST00000589219 NBPF3Q9H094 633 aa11.63□□□□□ -0.55
VPS25-202ENST00000589219 NUP62CLQ9H1M0 184 aa11.63□□□□□ -0.55
VPS25-202ENST00000589219 CREBZFQ9NS37 354 aa11.63□□□□□ -0.55
VPS25-202ENST00000589219 HACL1Q9UJ83 578 aa11.63□□□□□ -0.55
VPS25-202ENST00000589219 DENND2AQ9ULE3 1009 aa11.63□□□□□ -0.55
VPS25-202ENST00000589219 CPLX1O14810 134 aa11.62□□□□□ -0.55
VPS25-202ENST00000589219 CAVIN4Q5BKX8 364 aa11.62□□□□□ -0.55
VPS25-202ENST00000589219 FUCA2Q9BTY2 467 aa11.62□□□□□ -0.55
VPS25-202ENST00000589219 ANKRD2Q9GZV1 360 aa11.62□□□□□ -0.55
VPS25-202ENST00000589219 VPS33BQ9H267 617 aa11.62□□□□□ -0.55
VPS25-202ENST00000589219 RNF41Q9H4P4 317 aaPredicted RBP11.62□□□□□ -0.55
VPS25-202ENST00000589219 NCOA5Q9HCD5 579 aaKnown RBP11.62□□□□□ -0.55
VPS25-202ENST00000589219 EPB41L4AQ9HCS5 686 aaPredicted RBP11.62□□□□□ -0.55
VPS25-202ENST00000589219 HPS5Q9UPZ3 1129 aa11.62□□□□□ -0.55
VPS25-202ENST00000589219 COL1A1P02452 1464 aaPredicted RBP11.62□□□□□ -0.55
VPS25-202ENST00000589219 NEDD4P46934 1319 aa11.61□□□□□ -0.55
VPS25-202ENST00000589219 ZNF541Q9H0D2 1346 aa11.61□□□□□ -0.55
VPS25-202ENST00000589219 ESPNB1AK53 854 aa11.61□□□□□ -0.55
VPS25-202ENST00000589219 CCDC192P0DO97 292 aa11.61□□□□□ -0.55
VPS25-202ENST00000589219 EPHX2P34913 555 aa11.61□□□□□ -0.55
VPS25-202ENST00000589219 CLCN1P35523 988 aa11.61□□□□□ -0.55
VPS25-202ENST00000589219 TDO2P48775 406 aa11.61□□□□□ -0.55
VPS25-202ENST00000589219 METAP2P50579 478 aaKnown RBP eCLIP11.61□□□□□ -0.55
VPS25-202ENST00000589219 BCAMP50895 628 aa11.61□□□□□ -0.55
VPS25-202ENST00000589219 RCAN1P53805 252 aa11.61□□□□□ -0.55
VPS25-202ENST00000589219 MAP3K11Q16584 847 aa11.61□□□□□ -0.55
VPS25-202ENST00000589219 EAPPQ56P03 285 aaPredicted RBP11.61□□□□□ -0.55
VPS25-202ENST00000589219 CHST3Q7LGC8 479 aa11.61□□□□□ -0.55
VPS25-202ENST00000589219 BRAPQ7Z569 592 aa11.61□□□□□ -0.55
VPS25-202ENST00000589219 SGMS1Q86VZ5 419 aa11.61□□□□□ -0.55
VPS25-202ENST00000589219 IFNL3Q8IZI9 196 aa11.61□□□□□ -0.55
VPS25-202ENST00000589219 LARGE2Q8N3Y3 721 aa11.61□□□□□ -0.55
VPS25-202ENST00000589219 BICD2Q8TD16 824 aa11.61□□□□□ -0.55
VPS25-202ENST00000589219 STAG1Q8WVM7 1258 aa11.61□□□□□ -0.55
VPS25-202ENST00000589219 RTN4Q9NQC3 1192 aaKnown RBP11.61□□□□□ -0.55
VPS25-202ENST00000589219 LRP2BPQ9P2M1 347 aa11.61□□□□□ -0.55
VPS25-202ENST00000589219 CLEC11AQ9Y240 323 aa11.61□□□□□ -0.55
VPS25-202ENST00000589219 STK36Q9NRP7 1315 aa11.6□□□□□ -0.55
VPS25-202ENST00000589219 SNED1Q8TER0 1413 aa11.6□□□□□ -0.55
VPS25-202ENST00000589219 BBOX1O75936 387 aa11.6□□□□□ -0.55
VPS25-202ENST00000589219 POTEIP0CG38 1075 aa11.6□□□□□ -0.55
VPS25-202ENST00000589219 POTEJP0CG39 1038 aa11.6□□□□□ -0.55
VPS25-202ENST00000589219 LMOD1P29536 600 aaPredicted RBP11.6□□□□□ -0.55
VPS25-202ENST00000589219 LIFRP42702 1097 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms