RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 CDK8P49336 464 aa10.55□□□□□ -0.72
VMP1-208ENST00000588617 AP3B2Q13367 1082 aa10.55□□□□□ -0.72
VMP1-208ENST00000588617 DALRD3Q5D0E6 543 aaKnown RBP10.55□□□□□ -0.72
VMP1-208ENST00000588617 MRM1Q6IN84 353 aaKnown RBP10.55□□□□□ -0.72
VMP1-208ENST00000588617 EEPD1Q7L9B9 569 aa10.55□□□□□ -0.72
VMP1-208ENST00000588617 ZSWIM2Q8NEG5 633 aa10.55□□□□□ -0.72
VMP1-208ENST00000588617 KIFC2Q96AC6 838 aa10.55□□□□□ -0.72
VMP1-208ENST00000588617 ZNF669Q96BR6 464 aaPredicted RBP10.55□□□□□ -0.72
VMP1-208ENST00000588617 SMG9Q9H0W8 520 aaKnown RBP10.55□□□□□ -0.72
VMP1-208ENST00000588617 TRIM33Q9UPN9 1127 aa10.55□□□□□ -0.72
VMP1-208ENST00000588617 HTR3BO95264 441 aa10.54□□□□□ -0.72
VMP1-208ENST00000588617 GSTP1P09211 210 aaKnown RBP10.54□□□□□ -0.72
VMP1-208ENST00000588617 VIL1P09327 827 aaKnown RBP10.54□□□□□ -0.72
VMP1-208ENST00000588617 CABP4P57796 275 aa10.54□□□□□ -0.72
VMP1-208ENST00000588617 MLECQ14165 292 aa10.54□□□□□ -0.72
VMP1-208ENST00000588617 HSP90AB2PQ58FF8 381 aa10.54□□□□□ -0.72
VMP1-208ENST00000588617 ELMSAN1Q6PJG2 1045 aa10.54□□□□□ -0.72
VMP1-208ENST00000588617 TMEM40Q8WWA1 233 aa10.54□□□□□ -0.72
VMP1-208ENST00000588617 ZC3H12CQ9C0D7 883 aaKnown RBP10.54□□□□□ -0.72
VMP1-208ENST00000588617 PCDHA4Q9UN74 947 aa10.54□□□□□ -0.72
VMP1-208ENST00000588617 PLAAQ9Y263 795 aa10.54□□□□□ -0.72
VMP1-208ENST00000588617 SLC12A7Q9Y666 1083 aa10.54□□□□□ -0.72
VMP1-208ENST00000588617 MEIS3P2A8K0S8 358 aa10.53□□□□□ -0.72
VMP1-208ENST00000588617 CNGA1P29973 690 aa10.53□□□□□ -0.72
VMP1-208ENST00000588617 PERM1Q5SV97 790 aa10.53□□□□□ -0.72
VMP1-208ENST00000588617 KRT26Q7Z3Y9 468 aa10.53□□□□□ -0.72
VMP1-208ENST00000588617 ACSBG1Q96GR2 724 aa10.53□□□□□ -0.72
VMP1-208ENST00000588617 TYW1Q9NV66 732 aaKnown RBP10.53□□□□□ -0.72
VMP1-208ENST00000588617 SUGT1Q9Y2Z0 365 aa10.53□□□□□ -0.72
VMP1-208ENST00000588617 UPK3BL1B0FP48 263 aa10.52□□□□□ -0.73
VMP1-208ENST00000588617 UPK3BL2E5RIL1 263 aa10.52□□□□□ -0.73
VMP1-208ENST00000588617 SOX1O00570 391 aaPredicted RBP10.52□□□□□ -0.73
VMP1-208ENST00000588617 FAM153BP0C7A2 387 aa10.52□□□□□ -0.73
VMP1-208ENST00000588617 NCAPHQ15003 741 aa10.52□□□□□ -0.73
VMP1-208ENST00000588617 WIPI1Q5MNZ9 446 aaPredicted RBP10.52□□□□□ -0.73
VMP1-208ENST00000588617 VHLLQ6RSH7 139 aa10.52□□□□□ -0.73
VMP1-208ENST00000588617 FERMT3Q86UX7 667 aa10.52□□□□□ -0.73
VMP1-208ENST00000588617 SPATA9Q9BWV2 254 aa10.52□□□□□ -0.73
VMP1-208ENST00000588617 SLC6A14Q9UN76 642 aa10.52□□□□□ -0.73
VMP1-208ENST00000588617 SIN3BO75182 1162 aa10.51□□□□□ -0.73
VMP1-208ENST00000588617 CDC27P30260 824 aa10.51□□□□□ -0.73
VMP1-208ENST00000588617 PCBP4P57723 403 aaKnown RBP10.51□□□□□ -0.73
VMP1-208ENST00000588617 HGSNATQ68CP4 663 aa10.51□□□□□ -0.73
VMP1-208ENST00000588617 GPBAR1Q8TDU6 330 aa10.51□□□□□ -0.73
VMP1-208ENST00000588617 CORINQ9Y5Q5 1042 aa10.51□□□□□ -0.73
VMP1-208ENST00000588617 PRR36Q9H6K5 1346 aa10.51□□□□□ -0.73
VMP1-208ENST00000588617 GFRA2O00451 464 aa10.5□□□□□ -0.73
VMP1-208ENST00000588617 WFS1O76024 890 aa10.5□□□□□ -0.73
VMP1-208ENST00000588617 GSTM4Q03013 218 aa10.5□□□□□ -0.73
VMP1-208ENST00000588617 TMEM67Q5HYA8 995 aa10.5□□□□□ -0.73
VMP1-208ENST00000588617 ZNF468Q5VIY5 522 aaPredicted RBP10.5□□□□□ -0.73
VMP1-208ENST00000588617 GDF6Q6KF10 455 aaPredicted RBP10.5□□□□□ -0.73
VMP1-208ENST00000588617 UNC5AQ6ZN44 842 aa10.5□□□□□ -0.73
VMP1-208ENST00000588617 TAB3Q8N5C8 712 aaPredicted RBP10.5□□□□□ -0.73
VMP1-208ENST00000588617 HOMER2Q9NSB8 354 aa10.5□□□□□ -0.73
VMP1-208ENST00000588617 REV1Q9UBZ9 1251 aa10.5□□□□□ -0.73
VMP1-208ENST00000588617 SELPP16109 830 aa10.49□□□□□ -0.73
VMP1-208ENST00000588617 PLCG1P19174 1290 aa10.49□□□□□ -0.73
VMP1-208ENST00000588617 EPHA1P21709 976 aa10.49□□□□□ -0.73
VMP1-208ENST00000588617 ITGA6P23229 1130 aa10.49□□□□□ -0.73
VMP1-208ENST00000588617 CDC25BP30305 580 aa10.49□□□□□ -0.73
VMP1-208ENST00000588617 INPP5AQ14642 412 aa10.49□□□□□ -0.73
VMP1-208ENST00000588617 ZYXQ15942 572 aaKnown RBP10.49□□□□□ -0.73
VMP1-208ENST00000588617 OVOS1Q6IE37 1185 aa10.49□□□□□ -0.73
VMP1-208ENST00000588617 FOXR1Q6PIV2 292 aa10.49□□□□□ -0.73
VMP1-208ENST00000588617 DHX37Q8IY37 1157 aaKnown RBP10.49□□□□□ -0.73
VMP1-208ENST00000588617 PRPF38AQ8NAV1 312 aaKnown RBP10.49□□□□□ -0.73
VMP1-208ENST00000588617 JDP2Q8WYK2 163 aa10.49□□□□□ -0.73
VMP1-208ENST00000588617 PLPPR2Q96GM1 343 aa10.49□□□□□ -0.73
VMP1-208ENST00000588617 SLC26A8Q96RN1 970 aa10.49□□□□□ -0.73
VMP1-208ENST00000588617 CEP89Q96ST8 783 aa10.49□□□□□ -0.73
VMP1-208ENST00000588617 IER2Q9BTL4 223 aa10.49□□□□□ -0.73
VMP1-208ENST00000588617 GMIPQ9P107 970 aa10.49□□□□□ -0.73
VMP1-208ENST00000588617 NAGPAQ9UK23 515 aa10.49□□□□□ -0.73
VMP1-208ENST00000588617 PCDHB10Q9UN67 800 aa10.49□□□□□ -0.73
VMP1-208ENST00000588617 FAN1Q9Y2M0 1017 aa10.49□□□□□ -0.73
VMP1-208ENST00000588617 SNCAIPQ9Y6H5 919 aa10.49□□□□□ -0.73
VMP1-208ENST00000588617 LTBP3Q9NS15 1303 aa10.49□□□□□ -0.73
VMP1-208ENST00000588617 MYCLP1P12525 358 aaPredicted RBP10.48□□□□□ -0.73
VMP1-208ENST00000588617 NME1P15531 152 aaKnown RBP10.48□□□□□ -0.73
VMP1-208ENST00000588617 EVA1CP58658 441 aa10.48□□□□□ -0.73
VMP1-208ENST00000588617 LCE2CQ5TA81 110 aa10.48□□□□□ -0.73
VMP1-208ENST00000588617 INTS3Q68E01 1043 aaKnown RBP10.48□□□□□ -0.73
VMP1-208ENST00000588617 LRFN4Q6PJG9 635 aa10.48□□□□□ -0.73
VMP1-208ENST00000588617 HDXQ7Z353 690 aa10.48□□□□□ -0.73
VMP1-208ENST00000588617 ATG4CQ96DT6 458 aa10.48□□□□□ -0.73
VMP1-208ENST00000588617 PHAXQ9H814 394 aaKnown RBP10.48□□□□□ -0.73
VMP1-208ENST00000588617 CACNA2D2Q9NY47 1150 aa10.48□□□□□ -0.73
VMP1-208ENST00000588617 FAM86C2PA6NEL3 165 aa10.47□□□□□ -0.73
VMP1-208ENST00000588617 SLC22A31A6NKX4 558 aa10.47□□□□□ -0.73
VMP1-208ENST00000588617 H3BRJ5 948 aa10.47□□□□□ -0.73
VMP1-208ENST00000588617 GPR25O00155 361 aa10.47□□□□□ -0.73
VMP1-208ENST00000588617 ACRP10323 421 aa10.47□□□□□ -0.73
VMP1-208ENST00000588617 BMP4P12644 408 aa10.47□□□□□ -0.73
VMP1-208ENST00000588617 LONRF2Q1L5Z9 754 aa10.47□□□□□ -0.73
VMP1-208ENST00000588617 ODR4Q5SWX8 454 aa10.47□□□□□ -0.73
VMP1-208ENST00000588617 KIAA1211LQ6NV74 962 aa10.47□□□□□ -0.73
VMP1-208ENST00000588617 JAMLQ86YT9 394 aa10.47□□□□□ -0.73
VMP1-208ENST00000588617 CERS3Q8IU89 383 aa10.47□□□□□ -0.73
VMP1-208ENST00000588617 NIM1KQ8IY84 436 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms