RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 PLD6Q8N2A8 252 aaKnown RBP7.93□□□□□ -1.14
SMCHD1-208ENST00000583344 BCL7CQ8WUZ0 217 aaPredicted RBP7.93□□□□□ -1.14
SMCHD1-208ENST00000583344 FBXO24O75426 580 aa7.92□□□□□ -1.14
SMCHD1-208ENST00000583344 NME2P22392 152 aa7.92□□□□□ -1.14
SMCHD1-208ENST00000583344 MAPK8P45983 427 aa7.92□□□□□ -1.14
SMCHD1-208ENST00000583344 HNRNPUQ00839 825 aaKnown RBP eCLIP7.92□□□□□ -1.14
SMCHD1-208ENST00000583344 SPRED2Q7Z698 418 aa7.92□□□□□ -1.14
SMCHD1-208ENST00000583344 AGBL5Q8NDL9 886 aa7.92□□□□□ -1.14
SMCHD1-208ENST00000583344 GPBAR1Q8TDU6 330 aa7.92□□□□□ -1.14
SMCHD1-208ENST00000583344 ISL2Q96A47 359 aa7.92□□□□□ -1.14
SMCHD1-208ENST00000583344 NECAB3Q96P71 396 aaPredicted RBP7.92□□□□□ -1.14
SMCHD1-208ENST00000583344 CBX8Q9HC52 389 aa7.92□□□□□ -1.14
SMCHD1-208ENST00000583344 SLC5A6Q9Y289 635 aa7.92□□□□□ -1.14
SMCHD1-208ENST00000583344 ZNF252P-AS1Q0IIN9 211 aa7.91□□□□□ -1.14
SMCHD1-208ENST00000583344 BNIP3Q12983 259 aa7.91□□□□□ -1.14
SMCHD1-208ENST00000583344 ZC3H12AQ5D1E8 599 aaKnown RBP7.91□□□□□ -1.14
SMCHD1-208ENST00000583344 ACSBG1Q96GR2 724 aa7.91□□□□□ -1.14
SMCHD1-208ENST00000583344 IVNS1ABPQ9Y6Y0 642 aa7.91□□□□□ -1.14
SMCHD1-208ENST00000583344 PAGE1O75459 146 aa7.9□□□□□ -1.14
SMCHD1-208ENST00000583344 GRIN3AQ8TCU5 1115 aa7.9□□□□□ -1.14
SMCHD1-208ENST00000583344 DUSP23Q9BVJ7 150 aa7.9□□□□□ -1.14
SMCHD1-208ENST00000583344 OSBPL7Q9BZF2 842 aa7.9□□□□□ -1.14
SMCHD1-208ENST00000583344 SSU72Q9NP77 194 aaKnown RBP7.9□□□□□ -1.14
SMCHD1-208ENST00000583344 PCOLCE2Q9UKZ9 415 aa7.9□□□□□ -1.14
SMCHD1-208ENST00000583344 WWC3Q9ULE0 1092 aa7.9□□□□□ -1.14
SMCHD1-208ENST00000583344 ENC1O14682 589 aa7.89□□□□□ -1.15
SMCHD1-208ENST00000583344 GSTT1P30711 240 aa7.89□□□□□ -1.15
SMCHD1-208ENST00000583344 CD96P40200 585 aa7.89□□□□□ -1.15
SMCHD1-208ENST00000583344 FMR1Q06787 632 aaKnown RBP eCLIP7.89□□□□□ -1.15
SMCHD1-208ENST00000583344 PLCL1Q15111 1095 aa7.89□□□□□ -1.15
SMCHD1-208ENST00000583344 TOP6BLQ8N6T0 577 aa7.89□□□□□ -1.15
SMCHD1-208ENST00000583344 NETO1Q8TDF5 533 aa7.89□□□□□ -1.15
SMCHD1-208ENST00000583344 EMILIN2Q9BXX0 1053 aa7.89□□□□□ -1.15
SMCHD1-208ENST00000583344 CSADQ9Y600 493 aa7.89□□□□□ -1.15
SMCHD1-208ENST00000583344 ITGB5P18084 799 aa7.88□□□□□ -1.15
SMCHD1-208ENST00000583344 ERVK-24P63145 666 aa7.88□□□□□ -1.15
SMCHD1-208ENST00000583344 RASIP1Q5U651 963 aa7.88□□□□□ -1.15
SMCHD1-208ENST00000583344 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.88□□□□□ -1.15
SMCHD1-208ENST00000583344 STK11IPQ8N1F8 1099 aa7.88□□□□□ -1.15
SMCHD1-208ENST00000583344 RNF214Q8ND24 703 aa7.88□□□□□ -1.15
SMCHD1-208ENST00000583344 KRTAP9-9Q9BYP9 154 aa7.88□□□□□ -1.15
SMCHD1-208ENST00000583344 KRTAP9-4Q9BYQ2 154 aa7.88□□□□□ -1.15
SMCHD1-208ENST00000583344 DCDC2CA8MYV0 355 aa7.87□□□□□ -1.15
SMCHD1-208ENST00000583344 BMP6P22004 513 aa7.87□□□□□ -1.15
SMCHD1-208ENST00000583344 PPM1JQ5JR12 505 aa7.87□□□□□ -1.15
SMCHD1-208ENST00000583344 UBE3DQ7Z6J8 389 aa7.87□□□□□ -1.15
SMCHD1-208ENST00000583344 FBF1Q8TES7 1133 aa7.87□□□□□ -1.15
SMCHD1-208ENST00000583344 CACNA2D2Q9NY47 1150 aa7.87□□□□□ -1.15
SMCHD1-208ENST00000583344 CD8BP10966 210 aa7.86□□□□□ -1.15
SMCHD1-208ENST00000583344 NTF4P34130 210 aa7.86□□□□□ -1.15
SMCHD1-208ENST00000583344 OXCT1P55809 520 aa7.86□□□□□ -1.15
SMCHD1-208ENST00000583344 ZNF792Q3KQV3 632 aa7.86□□□□□ -1.15
SMCHD1-208ENST00000583344 ARHGAP27Q6ZUM4 889 aa7.86□□□□□ -1.15
SMCHD1-208ENST00000583344 ZSCAN29Q8IWY8 852 aaPredicted RBP7.86□□□□□ -1.15
SMCHD1-208ENST00000583344 MISP3Q96FF7 219 aa7.86□□□□□ -1.15
SMCHD1-208ENST00000583344 ASB16Q96NS5 453 aa7.86□□□□□ -1.15
SMCHD1-208ENST00000583344 CEACAM5P06731 702 aa7.85□□□□□ -1.15
SMCHD1-208ENST00000583344 CELA3AP09093 270 aa7.85□□□□□ -1.15
SMCHD1-208ENST00000583344 ITIH2P19823 946 aa7.85□□□□□ -1.15
SMCHD1-208ENST00000583344 OGFOD2Q6N063 350 aa7.85□□□□□ -1.15
SMCHD1-208ENST00000583344 C12orf40Q86WS4 652 aa7.85□□□□□ -1.15
SMCHD1-208ENST00000583344 CEP44Q9C0F1 390 aa7.85□□□□□ -1.15
SMCHD1-208ENST00000583344 PPM1HQ9ULR3 514 aa7.85□□□□□ -1.15
SMCHD1-208ENST00000583344 PLAGL2Q9UPG8 496 aa7.85□□□□□ -1.15
SMCHD1-208ENST00000583344 PAPLNO95428 1278 aa7.84□□□□□ -1.15
SMCHD1-208ENST00000583344 YBX3P16989 372 aaKnown RBP eCLIP7.84□□□□□ -1.15
SMCHD1-208ENST00000583344 IFI16Q16666 785 aaKnown RBP7.84□□□□□ -1.15
SMCHD1-208ENST00000583344 ALG1LQ6GMV1 187 aa7.84□□□□□ -1.15
SMCHD1-208ENST00000583344 LLGL2Q6P1M3 1020 aa7.84□□□□□ -1.15
SMCHD1-208ENST00000583344 ASIC4Q96FT7 647 aa7.84□□□□□ -1.15
SMCHD1-208ENST00000583344 HEXIM2Q96MH2 286 aaKnown RBP7.84□□□□□ -1.15
SMCHD1-208ENST00000583344 SRCIN1Q9C0H9 1055 aa7.84□□□□□ -1.15
SMCHD1-208ENST00000583344 PICK1Q9NRD5 415 aa7.84□□□□□ -1.15
SMCHD1-208ENST00000583344 BTBD11A6QL63 1104 aa7.83□□□□□ -1.16
SMCHD1-208ENST00000583344 TRIM37O94972 964 aa7.83□□□□□ -1.16
SMCHD1-208ENST00000583344 JUNBP17275 347 aaPredicted RBP7.83□□□□□ -1.16
SMCHD1-208ENST00000583344 FUT4P22083 530 aa7.83□□□□□ -1.16
SMCHD1-208ENST00000583344 PRKCQQ04759 706 aa7.83□□□□□ -1.16
SMCHD1-208ENST00000583344 AOC3Q16853 763 aa7.83□□□□□ -1.16
SMCHD1-208ENST00000583344 ADAMTS6Q9UKP5 1117 aa7.83□□□□□ -1.16
SMCHD1-208ENST00000583344 PCDHA4Q9UN74 947 aa7.83□□□□□ -1.16
SMCHD1-208ENST00000583344 SAMM50Q9Y512 469 aa7.83□□□□□ -1.16
SMCHD1-208ENST00000583344 P4HBP07237 508 aaKnown RBP7.82□□□□□ -1.16
SMCHD1-208ENST00000583344 USP17L7P0C7H9 530 aa7.82□□□□□ -1.16
SMCHD1-208ENST00000583344 ATP2B2Q01814 1243 aa7.82□□□□□ -1.16
SMCHD1-208ENST00000583344 PCNX4Q63HM2 1172 aa7.82□□□□□ -1.16
SMCHD1-208ENST00000583344 HRASLS5Q96KN8 279 aa7.82□□□□□ -1.16
SMCHD1-208ENST00000583344 C12orf49Q9H741 205 aa7.82□□□□□ -1.16
SMCHD1-208ENST00000583344 MKNK2Q9HBH9 465 aa7.82□□□□□ -1.16
SMCHD1-208ENST00000583344 MBNL3Q9NUK0 354 aaKnown RBP7.82□□□□□ -1.16
SMCHD1-208ENST00000583344 VAV3Q9UKW4 847 aa7.82□□□□□ -1.16
SMCHD1-208ENST00000583344 RNASE1P07998 156 aaKnown RBP7.81□□□□□ -1.16
SMCHD1-208ENST00000583344 RING1Q06587 406 aa7.81□□□□□ -1.16
SMCHD1-208ENST00000583344 KCNA1Q09470 495 aa7.81□□□□□ -1.16
SMCHD1-208ENST00000583344 ZBTB37Q5TC79 503 aa7.81□□□□□ -1.16
SMCHD1-208ENST00000583344 FAM214BQ7L5A3 538 aa7.81□□□□□ -1.16
SMCHD1-208ENST00000583344 RC3H2Q9HBD1 1191 aaKnown RBP7.81□□□□□ -1.16
SMCHD1-208ENST00000583344 PRDM10Q9NQV6 1147 aa7.81□□□□□ -1.16
SMCHD1-208ENST00000583344 SPG7Q9UQ90 795 aa7.81□□□□□ -1.16
SMCHD1-208ENST00000583344 TMEM265A0A087WTH1 108 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms