RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 TBC1D2Q9BYX2 928 aa29.85■■■□□ 2.37
SHMT1-207ENST00000580002 PPARAQ07869 468 aa29.84■■■□□ 2.37
SHMT1-207ENST00000580002 ZFPM1Q8IX07 1006 aa29.84■■■□□ 2.37
SHMT1-207ENST00000580002 LARP6Q9BRS8 491 aaKnown RBP29.84■■■□□ 2.37
SHMT1-207ENST00000580002 FLT1P17948 1338 aa29.83■■■□□ 2.37
SHMT1-207ENST00000580002 GIMAP6Q6P9H5 292 aa29.83■■■□□ 2.37
SHMT1-207ENST00000580002 NEK1Q96PY6 1258 aa29.83■■■□□ 2.37
SHMT1-207ENST00000580002 PLCG2P16885 1265 aa29.82■■■□□ 2.36
SHMT1-207ENST00000580002 CHST3Q7LGC8 479 aa29.82■■■□□ 2.36
SHMT1-207ENST00000580002 OGFOD1Q8N543 542 aa29.82■■■□□ 2.36
SHMT1-207ENST00000580002 TM6SF1Q9BZW5 370 aa29.82■■■□□ 2.36
SHMT1-207ENST00000580002 CDK5RAP2Q96SN8 1893 aa29.82■■■□□ 2.36
SHMT1-207ENST00000580002 RBM26Q5T8P6 1007 aaKnown RBP29.82■■■□□ 2.36
SHMT1-207ENST00000580002 HDAC9Q9UKV0 1011 aa29.82■■■□□ 2.36
SHMT1-207ENST00000580002 NEDD4P46934 1319 aa29.81■■■□□ 2.36
SHMT1-207ENST00000580002 DICER1Q9UPY3 1922 aaKnown RBP29.81■■■□□ 2.36
SHMT1-207ENST00000580002 SPDYE2BA6NHP3 402 aa29.81■■■□□ 2.36
SHMT1-207ENST00000580002 SPDYE6P0CI01 402 aa29.81■■■□□ 2.36
SHMT1-207ENST00000580002 PLCD1P51178 756 aa29.81■■■□□ 2.36
SHMT1-207ENST00000580002 NOL8Q76FK4 1167 aaKnown RBP29.81■■■□□ 2.36
SHMT1-207ENST00000580002 RUFY3Q7L099 469 aa29.81■■■□□ 2.36
SHMT1-207ENST00000580002 TTC14Q96N46 770 aa29.81■■■□□ 2.36
SHMT1-207ENST00000580002 DDNO94850 711 aaPredicted RBP29.8■■■□□ 2.36
SHMT1-207ENST00000580002 DLGAP5Q15398 846 aa29.8■■■□□ 2.36
SHMT1-207ENST00000580002 MICALL2Q8IY33 904 aa29.8■■■□□ 2.36
SHMT1-207ENST00000580002 LRRC2Q9BYS8 371 aa29.8■■■□□ 2.36
SHMT1-207ENST00000580002 CNOT7Q9UIV1 285 aaKnown RBP29.8■■■□□ 2.36
SHMT1-207ENST00000580002 CLRN2A0PK11 232 aa29.8■■■□□ 2.36
SHMT1-207ENST00000580002 KRT32Q14532 448 aa29.8■■■□□ 2.36
SHMT1-207ENST00000580002 NBPF9Q3BBW0 867 aa29.8■■■□□ 2.36
SHMT1-207ENST00000580002 SAMD7Q7Z3H4 446 aa29.8■■■□□ 2.36
SHMT1-207ENST00000580002 SLURP2P0DP57 97 aa29.79■■■□□ 2.36
SHMT1-207ENST00000580002 RPS6KB1P23443 525 aa29.79■■■□□ 2.36
SHMT1-207ENST00000580002 BLOC1S2Q6QNY1 142 aa29.79■■■□□ 2.36
SHMT1-207ENST00000580002 DYNLL2Q96FJ2 89 aa29.79■■■□□ 2.36
SHMT1-207ENST00000580002 IPO9Q96P70 1041 aaKnown RBP29.79■■■□□ 2.36
SHMT1-207ENST00000580002 MYOZ2Q9NPC6 264 aa29.79■■■□□ 2.36
SHMT1-207ENST00000580002 FAM198AQ9UFP1 575 aa29.79■■■□□ 2.36
SHMT1-207ENST00000580002 CYP46A1Q9Y6A2 500 aa29.79■■■□□ 2.36
SHMT1-207ENST00000580002 PSMA5P28066 241 aa29.78■■■□□ 2.36
SHMT1-207ENST00000580002 TCP10Q12799 353 aa29.78■■■□□ 2.36
SHMT1-207ENST00000580002 SBK1Q52WX2 424 aa29.78■■■□□ 2.36
SHMT1-207ENST00000580002 C12orf60Q5U649 245 aa29.78■■■□□ 2.36
SHMT1-207ENST00000580002 CERS3Q8IU89 383 aa29.78■■■□□ 2.36
SHMT1-207ENST00000580002 ANAPC4Q9UJX5 808 aa29.78■■■□□ 2.36
SHMT1-207ENST00000580002 RPS12P25398 132 aaKnown RBP29.77■■■□□ 2.36
SHMT1-207ENST00000580002 ZNF280AP59817 542 aaPredicted RBP29.77■■■□□ 2.36
SHMT1-207ENST00000580002 AKNAD1Q5T1N1 836 aa29.77■■■□□ 2.36
SHMT1-207ENST00000580002 DDRGK1Q96HY6 314 aa29.77■■■□□ 2.36
SHMT1-207ENST00000580002 ZBED3Q96IU2 234 aaPredicted RBP29.77■■■□□ 2.36
SHMT1-207ENST00000580002 PDRG1Q9NUG6 133 aa29.77■■■□□ 2.36
SHMT1-207ENST00000580002 SCAF8Q9UPN6 1271 aaKnown RBP29.77■■■□□ 2.36
SHMT1-207ENST00000580002 B4E1Z4 1266 aa29.77■■■□□ 2.36
SHMT1-207ENST00000580002 PRDM1O75626 825 aa29.77■■■□□ 2.36
SHMT1-207ENST00000580002 DPF2Q92785 391 aa29.77■■■□□ 2.36
SHMT1-207ENST00000580002 SNX21Q969T3 373 aa29.77■■■□□ 2.36
SHMT1-207ENST00000580002 GPHNQ9NQX3 736 aaPredicted RBP29.77■■■□□ 2.36
SHMT1-207ENST00000580002 WNT10BO00744 389 aa29.76■■■□□ 2.35
SHMT1-207ENST00000580002 AK2P54819 239 aa29.76■■■□□ 2.35
SHMT1-207ENST00000580002 TBC1D10BQ4KMP7 808 aaPredicted RBP29.76■■■□□ 2.35
SHMT1-207ENST00000580002 CYB5R4Q7L1T6 521 aa29.76■■■□□ 2.35
SHMT1-207ENST00000580002 MB21D2Q8IYB1 491 aaPredicted RBP29.76■■■□□ 2.35
SHMT1-207ENST00000580002 ARPP21Q9UBL0 812 aaPredicted RBP29.76■■■□□ 2.35
SHMT1-207ENST00000580002 ZNF70Q9UC06 446 aaPredicted RBP29.76■■■□□ 2.35
SHMT1-207ENST00000580002 ASTN2O75129 1339 aaPredicted RBP29.76■■■□□ 2.35
SHMT1-207ENST00000580002 LAMA4Q16363 1823 aa29.75■■■□□ 2.35
SHMT1-207ENST00000580002 POLR3DP05423 398 aaPredicted RBP29.75■■■□□ 2.35
SHMT1-207ENST00000580002 ANTXR2P58335 489 aa29.75■■■□□ 2.35
SHMT1-207ENST00000580002 EXOSC10Q01780 885 aaKnown RBP29.75■■■□□ 2.35
SHMT1-207ENST00000580002 RRP12Q5JTH9 1297 aaKnown RBP29.75■■■□□ 2.35
SHMT1-207ENST00000580002 GPC2Q8N158 579 aa29.75■■■□□ 2.35
SHMT1-207ENST00000580002 STAG1Q8WVM7 1258 aa29.75■■■□□ 2.35
SHMT1-207ENST00000580002 GRIN3BO60391 1043 aa29.75■■■□□ 2.35
SHMT1-207ENST00000580002 SLC44A5Q8NCS7 719 aa29.75■■■□□ 2.35
SHMT1-207ENST00000580002 EPS15P42566 896 aa29.74■■■□□ 2.35
SHMT1-207ENST00000580002 MFSD6Q6ZSS7 791 aa29.74■■■□□ 2.35
SHMT1-207ENST00000580002 SH3BP5LQ7L8J4 393 aa29.74■■■□□ 2.35
SHMT1-207ENST00000580002 MTMR14Q8NCE2 650 aa29.74■■■□□ 2.35
SHMT1-207ENST00000580002 NCOA7Q8NI08 942 aa29.74■■■□□ 2.35
SHMT1-207ENST00000580002 IDI2Q9BXS1 227 aa29.74■■■□□ 2.35
SHMT1-207ENST00000580002 OSBPL5Q9H0X9 879 aaPredicted RBP29.74■■■□□ 2.35
SHMT1-207ENST00000580002 NAV1Q8NEY1 1877 aa29.73■■■□□ 2.35
SHMT1-207ENST00000580002 TCP10L2B9ZVM9 353 aa29.73■■■□□ 2.35
SHMT1-207ENST00000580002 ST18O60284 1047 aa29.73■■■□□ 2.35
SHMT1-207ENST00000580002 DHX32Q7L7V1 743 aaKnown RBP29.73■■■□□ 2.35
SHMT1-207ENST00000580002 TOMM22Q9NS69 142 aa29.73■■■□□ 2.35
SHMT1-207ENST00000580002 DDTLA6NHG4 134 aaPredicted RBP29.72■■■□□ 2.35
SHMT1-207ENST00000580002 TOB2Q14106 344 aaPredicted RBP29.72■■■□□ 2.35
SHMT1-207ENST00000580002 SPDYE2Q495Y8 402 aa29.72■■■□□ 2.35
SHMT1-207ENST00000580002 Q6ZUG5 572 aa29.72■■■□□ 2.35
SHMT1-207ENST00000580002 SPRYD3Q8NCJ5 442 aa29.72■■■□□ 2.35
SHMT1-207ENST00000580002 GPRC5DQ9NZD1 345 aa29.72■■■□□ 2.35
SHMT1-207ENST00000580002 TIAM2Q8IVF5 1701 aa29.72■■■□□ 2.35
SHMT1-207ENST00000580002 FOCADQ5VW36 1801 aa29.71■■■□□ 2.35
SHMT1-207ENST00000580002 ECM29Q5VYK3 1845 aa29.71■■■□□ 2.35
SHMT1-207ENST00000580002 KDM4AO75164 1064 aa29.71■■■□□ 2.35
SHMT1-207ENST00000580002 HSCBQ8IWL3 235 aa29.71■■■□□ 2.35
SHMT1-207ENST00000580002 TRPM4Q8TD43 1214 aa29.71■■■□□ 2.35
SHMT1-207ENST00000580002 ZSWIM5Q9P217 1185 aa29.71■■■□□ 2.35
SHMT1-207ENST00000580002 DDX52Q9Y2R4 599 aaKnown RBP eCLIP29.71■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms