RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 COL2A1P02458 1487 aaPredicted RBP19.21■□□□□ 0.67
SS18-211ENST00000578954 WNT10BO00744 389 aa19.2■□□□□ 0.66
SS18-211ENST00000578954 ZNF213O14771 459 aa19.2■□□□□ 0.66
SS18-211ENST00000578954 KRT32Q14532 448 aa19.2■□□□□ 0.66
SS18-211ENST00000578954 FKBP1CQ5VVH2 108 aa19.2■□□□□ 0.66
SS18-211ENST00000578954 MAPKAPK5Q8IW41 473 aa19.2■□□□□ 0.66
SS18-211ENST00000578954 IL27Q8NEV9 243 aa19.2■□□□□ 0.66
SS18-211ENST00000578954 TDRD3Q9H7E2 651 aaKnown RBP19.2■□□□□ 0.66
SS18-211ENST00000578954 RBM19Q9Y4C8 960 aaKnown RBP19.2■□□□□ 0.66
SS18-211ENST00000578954 ROBO3Q96MS0 1386 aa19.19■□□□□ 0.66
SS18-211ENST00000578954 USP17L12C9JPN9 530 aa19.19■□□□□ 0.66
SS18-211ENST00000578954 USP17L21D6R901 530 aa19.19■□□□□ 0.66
SS18-211ENST00000578954 H7C1D1 291 aa19.19■□□□□ 0.66
SS18-211ENST00000578954 ENTPD3O75355 529 aa19.19■□□□□ 0.66
SS18-211ENST00000578954 PPARAQ07869 468 aa19.19■□□□□ 0.66
SS18-211ENST00000578954 NFIAQ12857 509 aa19.19■□□□□ 0.66
SS18-211ENST00000578954 DPY19L2Q6NUT2 758 aa19.19■□□□□ 0.66
SS18-211ENST00000578954 STOX1Q6ZVD7 989 aa19.19■□□□□ 0.66
SS18-211ENST00000578954 MCM9Q9NXL9 1143 aa19.19■□□□□ 0.66
SS18-211ENST00000578954 ZNF70Q9UC06 446 aaPredicted RBP19.19■□□□□ 0.66
SS18-211ENST00000578954 FAM198AQ9UFP1 575 aa19.19■□□□□ 0.66
SS18-211ENST00000578954 MYH1P12882 1939 aa19.18■□□□□ 0.66
SS18-211ENST00000578954 GLTPD2A6NH11 291 aa19.18■□□□□ 0.66
SS18-211ENST00000578954 EGFRP00533 1210 aa19.18■□□□□ 0.66
SS18-211ENST00000578954 HAND2P61296 217 aa19.18■□□□□ 0.66
SS18-211ENST00000578954 RABEP1Q15276 862 aa19.18■□□□□ 0.66
SS18-211ENST00000578954 KIF4BQ2VIQ3 1234 aa19.18■□□□□ 0.66
SS18-211ENST00000578954 C12orf60Q5U649 245 aa19.18■□□□□ 0.66
SS18-211ENST00000578954 TBC1D10CQ8IV04 446 aa19.18■□□□□ 0.66
SS18-211ENST00000578954 OSBPL5Q9H0X9 879 aaPredicted RBP19.18■□□□□ 0.66
SS18-211ENST00000578954 UTRNP46939 3433 aa19.18■□□□□ 0.66
SS18-211ENST00000578954 ATRNL1Q5VV63 1379 aa19.18■□□□□ 0.66
SS18-211ENST00000578954 E7EWF7 191 aa19.17■□□□□ 0.66
SS18-211ENST00000578954 FGRP09769 529 aa19.17■□□□□ 0.66
SS18-211ENST00000578954 PCP11498 1178 aaKnown RBP19.17■□□□□ 0.66
SS18-211ENST00000578954 NBPF9Q3BBW0 867 aa19.17■□□□□ 0.66
SS18-211ENST00000578954 ADCK5Q3MIX3 580 aa19.17■□□□□ 0.66
SS18-211ENST00000578954 SAMD7Q7Z3H4 446 aa19.17■□□□□ 0.66
SS18-211ENST00000578954 STAG1Q8WVM7 1258 aa19.17■□□□□ 0.66
SS18-211ENST00000578954 TMOD2Q9NZR1 351 aa19.17■□□□□ 0.66
SS18-211ENST00000578954 WDR90Q96KV7 1748 aa19.17■□□□□ 0.66
SS18-211ENST00000578954 MYO1BO43795 1136 aa19.16■□□□□ 0.66
SS18-211ENST00000578954 PSMA5P28066 241 aa19.16■□□□□ 0.66
SS18-211ENST00000578954 LMOD1P29536 600 aaPredicted RBP19.16■□□□□ 0.66
SS18-211ENST00000578954 EPS15P42566 896 aa19.16■□□□□ 0.66
SS18-211ENST00000578954 AMOTL1Q8IY63 956 aa19.16■□□□□ 0.66
SS18-211ENST00000578954 ZSWIM6Q9HCJ5 1215 aa19.16■□□□□ 0.66
SS18-211ENST00000578954 TAOK2Q9UL54 1235 aa19.16■□□□□ 0.66
SS18-211ENST00000578954 CYP2D7A0A087X1C5 515 aa19.15■□□□□ 0.66
SS18-211ENST00000578954 DCAF8L1A6NGE4 600 aa19.15■□□□□ 0.66
SS18-211ENST00000578954 CYP2D6P10635 497 aa19.15■□□□□ 0.66
SS18-211ENST00000578954 NT5C2P49902 561 aa19.15■□□□□ 0.66
SS18-211ENST00000578954 CACNB3P54284 484 aa19.15■□□□□ 0.66
SS18-211ENST00000578954 PICALMQ13492 652 aa19.15■□□□□ 0.66
SS18-211ENST00000578954 TBC1D10BQ4KMP7 808 aaPredicted RBP19.15■□□□□ 0.66
SS18-211ENST00000578954 AKNAD1Q5T1N1 836 aa19.15■□□□□ 0.66
SS18-211ENST00000578954 FAM83AQ86UY5 434 aa19.15■□□□□ 0.66
SS18-211ENST00000578954 TRPM4Q8TD43 1214 aa19.15■□□□□ 0.66
SS18-211ENST00000578954 JAKMIP1Q96N16 626 aaKnown RBP19.15■□□□□ 0.66
SS18-211ENST00000578954 DHX36Q9H2U1 1008 aaKnown RBP19.15■□□□□ 0.66
SS18-211ENST00000578954 RNF41Q9H4P4 317 aaPredicted RBP19.15■□□□□ 0.66
SS18-211ENST00000578954 ADARB2Q9NS39 739 aaKnown RBP19.15■□□□□ 0.66
SS18-211ENST00000578954 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.15■□□□□ 0.66
SS18-211ENST00000578954 TACC3Q9Y6A5 838 aa19.15■□□□□ 0.66
SS18-211ENST00000578954 SCN4AP35499 1836 aa19.15■□□□□ 0.66
SS18-211ENST00000578954 CLRN2A0PK11 232 aa19.14■□□□□ 0.65
SS18-211ENST00000578954 MINDY4BA8MYZ0 360 aa19.14■□□□□ 0.65
SS18-211ENST00000578954 CTDSPL2Q05D32 466 aa19.14■□□□□ 0.65
SS18-211ENST00000578954 TTC6Q86TZ1 520 aa19.14■□□□□ 0.65
SS18-211ENST00000578954 NEK1Q96PY6 1258 aa19.14■□□□□ 0.65
SS18-211ENST00000578954 SAP30BPQ9UHR5 308 aaKnown RBP19.14■□□□□ 0.65
SS18-211ENST00000578954 CNTNAP1P78357 1384 aa19.14■□□□□ 0.65
SS18-211ENST00000578954 SMIM22K7EJ46 135 aa19.13■□□□□ 0.65
SS18-211ENST00000578954 ORC4O43929 436 aa19.13■□□□□ 0.65
SS18-211ENST00000578954 POLR3DP05423 398 aaPredicted RBP19.13■□□□□ 0.65
SS18-211ENST00000578954 HMGB1P09429 215 aaKnown RBP19.13■□□□□ 0.65
SS18-211ENST00000578954 CASTP20810 708 aaKnown RBP19.13■□□□□ 0.65
SS18-211ENST00000578954 PLCD1P51178 756 aa19.13■□□□□ 0.65
SS18-211ENST00000578954 EVX2Q03828 476 aa19.13■□□□□ 0.65
SS18-211ENST00000578954 GABPAQ06546 454 aa19.13■□□□□ 0.65
SS18-211ENST00000578954 ZFPM1Q8IX07 1006 aa19.13■□□□□ 0.65
SS18-211ENST00000578954 MB21D2Q8IYB1 491 aaPredicted RBP19.13■□□□□ 0.65
SS18-211ENST00000578954 NCOA7Q8NI08 942 aa19.13■□□□□ 0.65
SS18-211ENST00000578954 FAM151AQ8WW52 585 aa19.13■□□□□ 0.65
SS18-211ENST00000578954 EHD4Q9H223 541 aa19.13■□□□□ 0.65
SS18-211ENST00000578954 CNNM2Q9H8M5 875 aa19.13■□□□□ 0.65
SS18-211ENST00000578954 SIPA1L1O43166 1804 aa19.13■□□□□ 0.65
SS18-211ENST00000578954 NEDD4P46934 1319 aa19.12■□□□□ 0.65
SS18-211ENST00000578954 WDR19Q8NEZ3 1342 aa19.12■□□□□ 0.65
SS18-211ENST00000578954 SLC3A2P08195 630 aaKnown RBP19.12■□□□□ 0.65
SS18-211ENST00000578954 HIRAP54198 1017 aaPredicted RBP19.12■□□□□ 0.65
SS18-211ENST00000578954 RBM26Q5T8P6 1007 aaKnown RBP19.12■□□□□ 0.65
SS18-211ENST00000578954 BLOC1S2Q6QNY1 142 aa19.12■□□□□ 0.65
SS18-211ENST00000578954 MFSD6Q6ZSS7 791 aa19.12■□□□□ 0.65
SS18-211ENST00000578954 C16orf86Q6ZW13 317 aa19.12■□□□□ 0.65
SS18-211ENST00000578954 RUFY3Q7L099 469 aa19.12■□□□□ 0.65
SS18-211ENST00000578954 SH3BP5LQ7L8J4 393 aa19.12■□□□□ 0.65
SS18-211ENST00000578954 PGAP2Q9UHJ9 254 aa19.12■□□□□ 0.65
SS18-211ENST00000578954 HACL1Q9UJ83 578 aa19.12■□□□□ 0.65
SS18-211ENST00000578954 PITPNM2Q9BZ72 1349 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms