RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 ATRNL1Q5VV63 1379 aa21.84■■□□□ 1.09
CCDC40-213ENST00000574933 LAMB1P07942 1786 aa21.84■■□□□ 1.09
CCDC40-213ENST00000574933 FSTL1Q12841 308 aa21.83■■□□□ 1.09
CCDC40-213ENST00000574933 RASA3Q14644 834 aa21.83■■□□□ 1.09
CCDC40-213ENST00000574933 CWC27Q6UX04 472 aaKnown RBP21.83■■□□□ 1.09
CCDC40-213ENST00000574933 TGFBRAP1Q8WUH2 860 aa21.83■■□□□ 1.09
CCDC40-213ENST00000574933 TEPSINQ96N21 525 aa21.83■■□□□ 1.09
CCDC40-213ENST00000574933 GLIS2Q9BZE0 524 aaPredicted RBP21.83■■□□□ 1.09
CCDC40-213ENST00000574933 FLT1P17948 1338 aa21.82■■□□□ 1.08
CCDC40-213ENST00000574933 CCDC171Q6TFL3 1326 aa21.82■■□□□ 1.08
CCDC40-213ENST00000574933 MYH8P13535 1937 aa21.82■■□□□ 1.08
CCDC40-213ENST00000574933 CDC45O75419 566 aa21.82■■□□□ 1.08
CCDC40-213ENST00000574933 MFAP1P55081 439 aaKnown RBP21.82■■□□□ 1.08
CCDC40-213ENST00000574933 GIMAP6Q6P9H5 292 aa21.82■■□□□ 1.08
CCDC40-213ENST00000574933 USP48Q86UV5 1035 aa21.82■■□□□ 1.08
CCDC40-213ENST00000574933 OSBPL5Q9H0X9 879 aaPredicted RBP21.82■■□□□ 1.08
CCDC40-213ENST00000574933 GSG1L2A8MUP6 293 aa21.81■■□□□ 1.08
CCDC40-213ENST00000574933 ADM5C9JUS6 153 aa21.81■■□□□ 1.08
CCDC40-213ENST00000574933 CCDC129Q6ZRS4 1044 aa21.81■■□□□ 1.08
CCDC40-213ENST00000574933 ZNF589Q86UQ0 364 aaPredicted RBP21.81■■□□□ 1.08
CCDC40-213ENST00000574933 DCP1AQ9NPI6 582 aaPredicted RBP21.81■■□□□ 1.08
CCDC40-213ENST00000574933 SLC4A4Q9Y6R1 1079 aa21.81■■□□□ 1.08
CCDC40-213ENST00000574933 PASKQ96RG2 1323 aa21.8■■□□□ 1.08
CCDC40-213ENST00000574933 LAMA4Q16363 1823 aa21.8■■□□□ 1.08
CCDC40-213ENST00000574933 PATL2C9JE40 543 aaKnown RBP21.8■■□□□ 1.08
CCDC40-213ENST00000574933 SGSM2O43147 1006 aa21.8■■□□□ 1.08
CCDC40-213ENST00000574933 PRKAB2O43741 272 aa21.8■■□□□ 1.08
CCDC40-213ENST00000574933 USP5P45974 858 aa21.8■■□□□ 1.08
CCDC40-213ENST00000574933 PICALMQ13492 652 aa21.8■■□□□ 1.08
CCDC40-213ENST00000574933 MAPKAPK5Q8IW41 473 aa21.8■■□□□ 1.08
CCDC40-213ENST00000574933 ZFPM1Q8IX07 1006 aa21.8■■□□□ 1.08
CCDC40-213ENST00000574933 SDR42E1Q8WUS8 393 aa21.8■■□□□ 1.08
CCDC40-213ENST00000574933 TMEM39BQ9GZU3 492 aa21.8■■□□□ 1.08
CCDC40-213ENST00000574933 IL25Q9H293 177 aa21.8■■□□□ 1.08
CCDC40-213ENST00000574933 SCAF8Q9UPN6 1271 aaKnown RBP21.8■■□□□ 1.08
CCDC40-213ENST00000574933 FOXP2O15409 715 aa21.79■■□□□ 1.08
CCDC40-213ENST00000574933 TCP10Q12799 353 aa21.79■■□□□ 1.08
CCDC40-213ENST00000574933 SH3BP5LQ7L8J4 393 aa21.79■■□□□ 1.08
CCDC40-213ENST00000574933 DHX36Q9H2U1 1008 aaKnown RBP21.79■■□□□ 1.08
CCDC40-213ENST00000574933 ALX1Q15699 326 aa21.78■■□□□ 1.08
CCDC40-213ENST00000574933 CDCA5Q96FF9 252 aa21.78■■□□□ 1.08
CCDC40-213ENST00000574933 ESYT1Q9BSJ8 1104 aa21.78■■□□□ 1.08
CCDC40-213ENST00000574933 SSC5DA1L4H1 1573 aa21.78■■□□□ 1.08
CCDC40-213ENST00000574933 ZMYM6O95789 1325 aa21.78■■□□□ 1.08
CCDC40-213ENST00000574933 PAPPA2Q9BXP8 1791 aa21.77■■□□□ 1.08
CCDC40-213ENST00000574933 DDTLA6NHG4 134 aaPredicted RBP21.77■■□□□ 1.08
CCDC40-213ENST00000574933 HSPD1P10809 573 aaKnown RBP21.77■■□□□ 1.08
CCDC40-213ENST00000574933 MAP3K10Q02779 954 aa21.77■■□□□ 1.08
CCDC40-213ENST00000574933 SUPT20HL1Q3ZLR7 823 aa21.77■■□□□ 1.08
CCDC40-213ENST00000574933 CASC1Q6TDU7 716 aa21.77■■□□□ 1.08
CCDC40-213ENST00000574933 EPB41L4AQ9HCS5 686 aaPredicted RBP21.77■■□□□ 1.08
CCDC40-213ENST00000574933 TRAF5O00463 557 aa21.76■■□□□ 1.07
CCDC40-213ENST00000574933 SBK1Q52WX2 424 aa21.76■■□□□ 1.07
CCDC40-213ENST00000574933 NBPF12Q5TAG4 269 aaPredicted RBP21.76■■□□□ 1.07
CCDC40-213ENST00000574933 VPS53Q5VIR6 699 aa21.76■■□□□ 1.07
CCDC40-213ENST00000574933 METTL16Q86W50 562 aaKnown RBP21.76■■□□□ 1.07
CCDC40-213ENST00000574933 CDAN1Q8IWY9 1227 aa21.76■■□□□ 1.07
CCDC40-213ENST00000574933 IFNL3Q8IZI9 196 aa21.76■■□□□ 1.07
CCDC40-213ENST00000574933 HOOK2Q96ED9 719 aa21.76■■□□□ 1.07
CCDC40-213ENST00000574933 DDRGK1Q96HY6 314 aa21.76■■□□□ 1.07
CCDC40-213ENST00000574933 DSCC1Q9BVC3 393 aa21.76■■□□□ 1.07
CCDC40-213ENST00000574933 TAOK2Q9UL54 1235 aa21.76■■□□□ 1.07
CCDC40-213ENST00000574933 OTOFQ9HC10 1997 aa21.76■■□□□ 1.07
CCDC40-213ENST00000574933 DLK2Q6UY11 383 aa21.75■■□□□ 1.07
CCDC40-213ENST00000574933 NACAP1Q9BZK3 213 aa21.75■■□□□ 1.07
CCDC40-213ENST00000574933 PI4KBQ9UBF8 816 aa21.75■■□□□ 1.07
CCDC40-213ENST00000574933 TBC1D12O60347 775 aa21.74■■□□□ 1.07
CCDC40-213ENST00000574933 PRAMEF18Q5VWM3 479 aa21.74■■□□□ 1.07
CCDC40-213ENST00000574933 TTC6Q86TZ1 520 aa21.74■■□□□ 1.07
CCDC40-213ENST00000574933 CSRNP1Q96S65 589 aa21.74■■□□□ 1.07
CCDC40-213ENST00000574933 EHD4Q9H223 541 aa21.74■■□□□ 1.07
CCDC40-213ENST00000574933 MCM9Q9NXL9 1143 aa21.74■■□□□ 1.07
CCDC40-213ENST00000574933 ARPP21Q9UBL0 812 aaPredicted RBP21.74■■□□□ 1.07
CCDC40-213ENST00000574933 PALD1Q9ULE6 856 aa21.74■■□□□ 1.07
CCDC40-213ENST00000574933 ATAD5Q96QE3 1844 aa21.73■■□□□ 1.07
CCDC40-213ENST00000574933 NF2P35240 595 aa21.73■■□□□ 1.07
CCDC40-213ENST00000574933 FMR1Q06787 632 aaKnown RBP eCLIP21.73■■□□□ 1.07
CCDC40-213ENST00000574933 C12orf60Q5U649 245 aa21.73■■□□□ 1.07
CCDC40-213ENST00000574933 CTR9Q6PD62 1173 aa21.73■■□□□ 1.07
CCDC40-213ENST00000574933 FOXP4Q8IVH2 680 aaPredicted RBP21.73■■□□□ 1.07
CCDC40-213ENST00000574933 ZSCAN29Q8IWY8 852 aaPredicted RBP21.73■■□□□ 1.07
CCDC40-213ENST00000574933 SAP30BPQ9UHR5 308 aaKnown RBP21.73■■□□□ 1.07
CCDC40-213ENST00000574933 USP17L12C9JPN9 530 aa21.72■■□□□ 1.07
CCDC40-213ENST00000574933 USP17L21D6R901 530 aa21.72■■□□□ 1.07
CCDC40-213ENST00000574933 APPP05067 770 aa21.72■■□□□ 1.07
CCDC40-213ENST00000574933 HLA-DOAP06340 250 aa21.72■■□□□ 1.07
CCDC40-213ENST00000574933 FGAP02671 866 aa21.71■■□□□ 1.07
CCDC40-213ENST00000574933 POLR3DP05423 398 aaPredicted RBP21.71■■□□□ 1.07
CCDC40-213ENST00000574933 TDO2P48775 406 aa21.71■■□□□ 1.07
CCDC40-213ENST00000574933 PLCD1P51178 756 aa21.71■■□□□ 1.07
CCDC40-213ENST00000574933 FKBP1BP68106 108 aa21.71■■□□□ 1.07
CCDC40-213ENST00000574933 GABPAQ06546 454 aa21.71■■□□□ 1.07
CCDC40-213ENST00000574933 MAP3K11Q16584 847 aa21.71■■□□□ 1.07
CCDC40-213ENST00000574933 CST9Q5W186 159 aa21.71■■□□□ 1.07
CCDC40-213ENST00000574933 DCAF15Q66K64 600 aa21.71■■□□□ 1.07
CCDC40-213ENST00000574933 NAPBQ9H115 298 aa21.71■■□□□ 1.07
CCDC40-213ENST00000574933 HERC5Q9UII4 1024 aaKnown RBP21.71■■□□□ 1.07
CCDC40-213ENST00000574933 ROBO3Q96MS0 1386 aa21.71■■□□□ 1.07
CCDC40-213ENST00000574933 AMOTL1Q8IY63 956 aa21.7■■□□□ 1.06
CCDC40-213ENST00000574933 MAP4K1Q92918 833 aa21.7■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms