RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 DISC1Q9NRI5 854 aa7.93□□□□□ -1.14
NUP88-208ENST00000574087 HIF3AQ9Y2N7 669 aa7.93□□□□□ -1.14
NUP88-208ENST00000574087 FAM221AA4D161 298 aa7.92□□□□□ -1.14
NUP88-208ENST00000574087 GAS2O43903 313 aaKnown RBP7.92□□□□□ -1.14
NUP88-208ENST00000574087 EIF4A3P38919 411 aaKnown RBP7.92□□□□□ -1.14
NUP88-208ENST00000574087 RING1Q06587 406 aa7.92□□□□□ -1.14
NUP88-208ENST00000574087 INPP5AQ14642 412 aa7.92□□□□□ -1.14
NUP88-208ENST00000574087 ZNF394Q53GI3 561 aa7.92□□□□□ -1.14
NUP88-208ENST00000574087 FBXL19Q6PCT2 694 aa7.92□□□□□ -1.14
NUP88-208ENST00000574087 LRFN4Q6PJG9 635 aa7.92□□□□□ -1.14
NUP88-208ENST00000574087 BNC2Q6ZN30 1099 aaPredicted RBP7.92□□□□□ -1.14
NUP88-208ENST00000574087 USP48Q86UV5 1035 aa7.92□□□□□ -1.14
NUP88-208ENST00000574087 FAM20CQ8IXL6 584 aa7.92□□□□□ -1.14
NUP88-208ENST00000574087 FAM105AQ9NUU6 356 aa7.92□□□□□ -1.14
NUP88-208ENST00000574087 DDX41Q9UJV9 622 aaKnown RBP7.92□□□□□ -1.14
NUP88-208ENST00000574087 DCDC2CA8MYV0 355 aa7.91□□□□□ -1.14
NUP88-208ENST00000574087 GREM1O60565 184 aa7.91□□□□□ -1.14
NUP88-208ENST00000574087 BMP3P12645 472 aa7.91□□□□□ -1.14
NUP88-208ENST00000574087 TCF3P15923 654 aa7.91□□□□□ -1.14
NUP88-208ENST00000574087 ASPAP45381 313 aa7.91□□□□□ -1.14
NUP88-208ENST00000574087 CDK8P49336 464 aa7.91□□□□□ -1.14
NUP88-208ENST00000574087 RACK1P63244 317 aaKnown RBP7.91□□□□□ -1.14
NUP88-208ENST00000574087 FAM160A1Q05DH4 1040 aa7.91□□□□□ -1.14
NUP88-208ENST00000574087 SGO2Q562F6 1265 aa7.91□□□□□ -1.14
NUP88-208ENST00000574087 NKAPLQ5M9Q1 402 aa7.91□□□□□ -1.14
NUP88-208ENST00000574087 C9orf131Q5VYM1 1079 aa7.91□□□□□ -1.14
NUP88-208ENST00000574087 CDPF1Q6NVV7 123 aa7.91□□□□□ -1.14
NUP88-208ENST00000574087 NT5DC4Q86YG4 428 aa7.91□□□□□ -1.14
NUP88-208ENST00000574087 GATAD2BQ8WXI9 593 aa7.91□□□□□ -1.14
NUP88-208ENST00000574087 JARID2Q92833 1246 aaPredicted RBP7.91□□□□□ -1.14
NUP88-208ENST00000574087 ATXN3LQ9H3M9 355 aa7.91□□□□□ -1.14
NUP88-208ENST00000574087 ADAMTS1Q9UHI8 967 aa7.91□□□□□ -1.14
NUP88-208ENST00000574087 PCDHGB7Q9Y5F8 929 aa7.91□□□□□ -1.14
NUP88-208ENST00000574087 SNCAIPQ9Y6H5 919 aa7.91□□□□□ -1.14
NUP88-208ENST00000574087 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.9□□□□□ -1.14
NUP88-208ENST00000574087 GFRA2O00451 464 aa7.9□□□□□ -1.14
NUP88-208ENST00000574087 DHX15O43143 795 aaKnown RBP7.9□□□□□ -1.14
NUP88-208ENST00000574087 CILPO75339 1184 aa7.9□□□□□ -1.14
NUP88-208ENST00000574087 F13A1P00488 732 aa7.9□□□□□ -1.14
NUP88-208ENST00000574087 H2AFB1P0C5Y9 115 aa7.9□□□□□ -1.14
NUP88-208ENST00000574087 H2AFB2P0C5Z0 115 aa7.9□□□□□ -1.14
NUP88-208ENST00000574087 RSPO4Q2I0M5 234 aaPredicted RBP7.9□□□□□ -1.14
NUP88-208ENST00000574087 PRR23CQ6ZRP0 262 aa7.9□□□□□ -1.14
NUP88-208ENST00000574087 CYFIP1Q7L576 1253 aa7.9□□□□□ -1.14
NUP88-208ENST00000574087 C12orf40Q86WS4 652 aa7.9□□□□□ -1.14
NUP88-208ENST00000574087 GOLM1Q8NBJ4 401 aa7.9□□□□□ -1.14
NUP88-208ENST00000574087 ZNF296Q8WUU4 475 aaPredicted RBP7.9□□□□□ -1.14
NUP88-208ENST00000574087 EZH1Q92800 747 aaPredicted RBP7.9□□□□□ -1.14
NUP88-208ENST00000574087 PLPPR2Q96GM1 343 aa7.9□□□□□ -1.14
NUP88-208ENST00000574087 ACSS3Q9H6R3 686 aa7.9□□□□□ -1.14
NUP88-208ENST00000574087 MAP4P27816 1152 aaKnown RBP7.89□□□□□ -1.15
NUP88-208ENST00000574087 USP11P51784 963 aa7.89□□□□□ -1.15
NUP88-208ENST00000574087 RPL6Q02878 288 aaKnown RBP7.89□□□□□ -1.15
NUP88-208ENST00000574087 RAD51AP2Q09MP3 1159 aa7.89□□□□□ -1.15
NUP88-208ENST00000574087 PPM1JQ5JR12 505 aa7.89□□□□□ -1.15
NUP88-208ENST00000574087 SNAP47Q5SQN1 464 aa7.89□□□□□ -1.15
NUP88-208ENST00000574087 RNF214Q8ND24 703 aa7.89□□□□□ -1.15
NUP88-208ENST00000574087 SUPT16HQ9Y5B9 1047 aaKnown RBP7.89□□□□□ -1.15
NUP88-208ENST00000574087 CSADQ9Y600 493 aa7.89□□□□□ -1.15
NUP88-208ENST00000574087 NEFMP07197 916 aa7.88□□□□□ -1.15
NUP88-208ENST00000574087 NTF4P34130 210 aa7.88□□□□□ -1.15
NUP88-208ENST00000574087 TTLL4Q14679 1199 aa7.88□□□□□ -1.15
NUP88-208ENST00000574087 WIPI1Q5MNZ9 446 aaPredicted RBP7.88□□□□□ -1.15
NUP88-208ENST00000574087 FAM196AQ6ZSG2 479 aa7.88□□□□□ -1.15
NUP88-208ENST00000574087 HDXQ7Z353 690 aa7.88□□□□□ -1.15
NUP88-208ENST00000574087 CLEC10AQ8IUN9 316 aa7.88□□□□□ -1.15
NUP88-208ENST00000574087 FBLIM1Q8WUP2 373 aa7.88□□□□□ -1.15
NUP88-208ENST00000574087 ELMO3Q96BJ8 720 aa7.88□□□□□ -1.15
NUP88-208ENST00000574087 FAM83CQ9BQN1 747 aa7.88□□□□□ -1.15
NUP88-208ENST00000574087 RAXQ9Y2V3 346 aa7.88□□□□□ -1.15
NUP88-208ENST00000574087 ROBO2Q9HCK4 1378 aa7.87□□□□□ -1.15
NUP88-208ENST00000574087 FANCGO15287 622 aa7.87□□□□□ -1.15
NUP88-208ENST00000574087 MPP2Q14168 576 aa7.87□□□□□ -1.15
NUP88-208ENST00000574087 BEND4Q6ZU67 534 aa7.87□□□□□ -1.15
NUP88-208ENST00000574087 ZNF654Q8IZM8 581 aa7.87□□□□□ -1.15
NUP88-208ENST00000574087 LRRC3Q9BY71 257 aa7.87□□□□□ -1.15
NUP88-208ENST00000574087 SEMA6CQ9H3T2 930 aa7.87□□□□□ -1.15
NUP88-208ENST00000574087 TACC3Q9Y6A5 838 aa7.87□□□□□ -1.15
NUP88-208ENST00000574087 NFICP08651 508 aa7.86□□□□□ -1.15
NUP88-208ENST00000574087 HCLS1P14317 486 aaPredicted RBP7.86□□□□□ -1.15
NUP88-208ENST00000574087 RAB6AP20340 208 aa7.86□□□□□ -1.15
NUP88-208ENST00000574087 ZBTB37Q5TC79 503 aa7.86□□□□□ -1.15
NUP88-208ENST00000574087 KIAA0825Q8IV33 1275 aa7.86□□□□□ -1.15
NUP88-208ENST00000574087 FBXO27Q8NI29 283 aa7.86□□□□□ -1.15
NUP88-208ENST00000574087 EAF1Q96JC9 268 aaPredicted RBP7.86□□□□□ -1.15
NUP88-208ENST00000574087 SPON2Q9BUD6 331 aa7.86□□□□□ -1.15
NUP88-208ENST00000574087 YIPF2Q9BWQ6 316 aa7.86□□□□□ -1.15
NUP88-208ENST00000574087 NT5C1AQ9BXI3 368 aa7.86□□□□□ -1.15
NUP88-208ENST00000574087 TGIF2Q9GZN2 237 aa7.86□□□□□ -1.15
NUP88-208ENST00000574087 KCNF1Q9H3M0 494 aa7.86□□□□□ -1.15
NUP88-208ENST00000574087 PIDD1Q9HB75 910 aa7.86□□□□□ -1.15
NUP88-208ENST00000574087 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.86□□□□□ -1.15
NUP88-208ENST00000574087 FAM95CA0A1B0GW59 222 aa7.85□□□□□ -1.15
NUP88-208ENST00000574087 HMX2A2RU54 273 aa7.85□□□□□ -1.15
NUP88-208ENST00000574087 RXRBP28702 533 aa7.85□□□□□ -1.15
NUP88-208ENST00000574087 DIEXFQ68CQ4 756 aaKnown RBP7.85□□□□□ -1.15
NUP88-208ENST00000574087 SEZ6L2Q6UXD5 910 aa7.85□□□□□ -1.15
NUP88-208ENST00000574087 SMYD4Q8IYR2 804 aaPredicted RBP7.85□□□□□ -1.15
NUP88-208ENST00000574087 ISL2Q96A47 359 aa7.85□□□□□ -1.15
NUP88-208ENST00000574087 WNT10AQ9GZT5 417 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms