RNA–Protein interactions for RNA: ENST00000571545.1

CIITA-207, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 3

Gene CIITA, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-207ENST00000571545 ZKSCAN4Q969J2 545 aaPredicted RBP11.97□□□□□ -0.49
CIITA-207ENST00000571545 PTPN18Q99952 460 aa11.97□□□□□ -0.49
CIITA-207ENST00000571545 CHMP4BQ9H444 224 aaKnown RBP11.97□□□□□ -0.49
CIITA-207ENST00000571545 EFCC1Q9HA90 598 aa11.97□□□□□ -0.49
CIITA-207ENST00000571545 FAM198AQ9UFP1 575 aa11.97□□□□□ -0.49
CIITA-207ENST00000571545 ZNF112Q9UJU3 913 aa11.97□□□□□ -0.49
CIITA-207ENST00000571545 DOCK1Q14185 1865 aa11.97□□□□□ -0.49
CIITA-207ENST00000571545 GPR75-ASB3A0A0A6YYF3 556 aa11.96□□□□□ -0.49
CIITA-207ENST00000571545 IRF6O14896 467 aa11.96□□□□□ -0.49
CIITA-207ENST00000571545 TLR2O60603 784 aa11.96□□□□□ -0.49
CIITA-207ENST00000571545 RGS3P49796 1198 aa11.96□□□□□ -0.49
CIITA-207ENST00000571545 ATP8B2P98198 1209 aa11.96□□□□□ -0.49
CIITA-207ENST00000571545 MECOMQ03112 1051 aa11.96□□□□□ -0.49
CIITA-207ENST00000571545 NFIAQ12857 509 aa11.96□□□□□ -0.49
CIITA-207ENST00000571545 TTC39AQ5SRH9 613 aa11.96□□□□□ -0.49
CIITA-207ENST00000571545 TMED8Q6PL24 325 aaPredicted RBP11.96□□□□□ -0.49
CIITA-207ENST00000571545 MIGA2Q7L4E1 593 aa11.96□□□□□ -0.49
CIITA-207ENST00000571545 CERS3Q8IU89 383 aa11.96□□□□□ -0.49
CIITA-207ENST00000571545 ERC1Q8IUD2 1116 aa11.96□□□□□ -0.49
CIITA-207ENST00000571545 R3HDMLQ9H3Y0 253 aa11.96□□□□□ -0.49
CIITA-207ENST00000571545 PICK1Q9NRD5 415 aa11.96□□□□□ -0.49
CIITA-207ENST00000571545 RAI14Q9P0K7 980 aa11.96□□□□□ -0.49
CIITA-207ENST00000571545 HMG20BQ9P0W2 317 aa11.96□□□□□ -0.49
CIITA-207ENST00000571545 LRP2BPQ9P2M1 347 aa11.96□□□□□ -0.49
CIITA-207ENST00000571545 KCNH4Q9UQ05 1017 aa11.96□□□□□ -0.49
CIITA-207ENST00000571545 RBBP6Q7Z6E9 1792 aaKnown RBP11.95□□□□□ -0.5
CIITA-207ENST00000571545 ATRNL1Q5VV63 1379 aa11.95□□□□□ -0.5
CIITA-207ENST00000571545 CXCL11O14625 94 aa11.95□□□□□ -0.5
CIITA-207ENST00000571545 SURF6O75683 361 aaKnown RBP11.95□□□□□ -0.5
CIITA-207ENST00000571545 BAG3O95817 575 aa11.95□□□□□ -0.5
CIITA-207ENST00000571545 INPP5BP32019 993 aa11.95□□□□□ -0.5
CIITA-207ENST00000571545 SOX10P56693 466 aa11.95□□□□□ -0.5
CIITA-207ENST00000571545 HSP90AB4PQ58FF6 505 aa11.95□□□□□ -0.5
CIITA-207ENST00000571545 TNNI3KQ59H18 835 aa11.95□□□□□ -0.5
CIITA-207ENST00000571545 ANKRD23Q86SG2 305 aa11.95□□□□□ -0.5
CIITA-207ENST00000571545 SCYL3Q8IZE3 742 aa11.95□□□□□ -0.5
CIITA-207ENST00000571545 CD99L2Q8TCZ2 262 aa11.95□□□□□ -0.5
CIITA-207ENST00000571545 ZNF512BQ96KM6 892 aaPredicted RBP11.95□□□□□ -0.5
CIITA-207ENST00000571545 TNNQ9UQP3 1299 aa11.95□□□□□ -0.5
CIITA-207ENST00000571545 NOP58Q9Y2X3 529 aaKnown RBP11.95□□□□□ -0.5
CIITA-207ENST00000571545 FPGT-TNNI3KV9GXZ4 949 aa11.95□□□□□ -0.5
CIITA-207ENST00000571545 BTBD19C9JJ37 291 aa11.94□□□□□ -0.5
CIITA-207ENST00000571545 CTNND1O60716 968 aaKnown RBP11.94□□□□□ -0.5
CIITA-207ENST00000571545 MCAMP43121 646 aa11.94□□□□□ -0.5
CIITA-207ENST00000571545 PRMT2P55345 433 aa11.94□□□□□ -0.5
CIITA-207ENST00000571545 FASTKD5Q7L8L6 764 aaKnown RBP11.94□□□□□ -0.5
CIITA-207ENST00000571545 FAM43AQ8N2R8 423 aa11.94□□□□□ -0.5
CIITA-207ENST00000571545 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.94□□□□□ -0.5
CIITA-207ENST00000571545 NSUN4Q96CB9 384 aaKnown RBP11.94□□□□□ -0.5
CIITA-207ENST00000571545 PARK7Q99497 189 aaKnown RBP11.94□□□□□ -0.5
CIITA-207ENST00000571545 TBC1D2Q9BYX2 928 aa11.94□□□□□ -0.5
CIITA-207ENST00000571545 PTPN22Q9Y2R2 807 aa11.94□□□□□ -0.5
CIITA-207ENST00000571545 ZBTB7BO15156 539 aaPredicted RBP11.93□□□□□ -0.5
CIITA-207ENST00000571545 TBC1D12O60347 775 aa11.93□□□□□ -0.5
CIITA-207ENST00000571545 MAP3K10Q02779 954 aa11.93□□□□□ -0.5
CIITA-207ENST00000571545 PICALMQ13492 652 aa11.93□□□□□ -0.5
CIITA-207ENST00000571545 NAA16Q6N069 864 aaPredicted RBP11.93□□□□□ -0.5
CIITA-207ENST00000571545 NBPF11Q86T75 865 aa11.93□□□□□ -0.5
CIITA-207ENST00000571545 DHX36Q9H2U1 1008 aaKnown RBP11.93□□□□□ -0.5
CIITA-207ENST00000571545 PDE4DIPQ5VU43 2346 aa11.93□□□□□ -0.5
CIITA-207ENST00000571545 HMMRO75330 724 aa11.92□□□□□ -0.5
CIITA-207ENST00000571545 RHBDL3P58872 404 aa11.92□□□□□ -0.5
CIITA-207ENST00000571545 ARMC5Q96C12 935 aa11.92□□□□□ -0.5
CIITA-207ENST00000571545 OSBPL5Q9H0X9 879 aaPredicted RBP11.92□□□□□ -0.5
CIITA-207ENST00000571545 HERC5Q9UII4 1024 aaKnown RBP11.92□□□□□ -0.5
CIITA-207ENST00000571545 DDX19BQ9UMR2 479 aa11.92□□□□□ -0.5
CIITA-207ENST00000571545 SLC45A1Q9Y2W3 748 aa11.92□□□□□ -0.5
CIITA-207ENST00000571545 FOCADQ5VW36 1801 aa11.92□□□□□ -0.5
CIITA-207ENST00000571545 PTPRFP10586 1907 aa11.92□□□□□ -0.5
CIITA-207ENST00000571545 ATAD5Q96QE3 1844 aa11.91□□□□□ -0.5
CIITA-207ENST00000571545 PHF20L1A8MW92 1017 aa11.91□□□□□ -0.5
CIITA-207ENST00000571545 PDHXO00330 501 aa11.91□□□□□ -0.5
CIITA-207ENST00000571545 RLBP1P12271 317 aa11.91□□□□□ -0.5
CIITA-207ENST00000571545 PTPRAP18433 802 aa11.91□□□□□ -0.5
CIITA-207ENST00000571545 HOXD10P28358 340 aa11.91□□□□□ -0.5
CIITA-207ENST00000571545 LACTBP83111 547 aaPredicted RBP11.91□□□□□ -0.5
CIITA-207ENST00000571545 SLC9C1Q4G0N8 1177 aa11.91□□□□□ -0.5
CIITA-207ENST00000571545 CEP85Q6P2H3 762 aa11.91□□□□□ -0.5
CIITA-207ENST00000571545 PI16Q6UXB8 463 aa11.91□□□□□ -0.5
CIITA-207ENST00000571545 TEX11Q8IYF3 940 aa11.91□□□□□ -0.5
CIITA-207ENST00000571545 DBNDD2Q9BQY9 259 aa11.91□□□□□ -0.5
CIITA-207ENST00000571545 C1orf115Q9H7X2 142 aa11.91□□□□□ -0.5
CIITA-207ENST00000571545 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.91□□□□□ -0.5
CIITA-207ENST00000571545 DDX4Q9NQI0 724 aaKnown RBP11.91□□□□□ -0.5
CIITA-207ENST00000571545 PNMA3Q9UL41 463 aa11.91□□□□□ -0.5
CIITA-207ENST00000571545 A0A0G2JLL6 359 aaPredicted RBP11.9□□□□□ -0.5
CIITA-207ENST00000571545 DDTLA6NHG4 134 aaPredicted RBP11.9□□□□□ -0.5
CIITA-207ENST00000571545 TBC1D9Q6ZT07 1266 aa11.9□□□□□ -0.5
CIITA-207ENST00000571545 PRRT2Q7Z6L0 340 aaPredicted RBP11.9□□□□□ -0.5
CIITA-207ENST00000571545 ZFPM1Q8IX07 1006 aa11.9□□□□□ -0.5
CIITA-207ENST00000571545 TRIM34Q9BYJ4 488 aa11.9□□□□□ -0.5
CIITA-207ENST00000571545 PI4KBQ9UBF8 816 aa11.9□□□□□ -0.5
CIITA-207ENST00000571545 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.9□□□□□ -0.5
CIITA-207ENST00000571545 ZHX2Q9Y6X8 837 aa11.9□□□□□ -0.5
CIITA-207ENST00000571545 CDK5RAP2Q96SN8 1893 aa11.89□□□□□ -0.51
CIITA-207ENST00000571545 PHIPQ8WWQ0 1821 aa11.89□□□□□ -0.51
CIITA-207ENST00000571545 HLA-DOAP06340 250 aa11.89□□□□□ -0.51
CIITA-207ENST00000571545 PPP4CP60510 307 aa11.89□□□□□ -0.51
CIITA-207ENST00000571545 PABPC4Q13310 644 aaKnown RBP eCLIP11.89□□□□□ -0.51
CIITA-207ENST00000571545 TTF1Q15361 905 aaPredicted RBP11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms