RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 ARMC5Q96C12 935 aa24.94■■□□□ 1.58
VPS53-210ENST00000571456 NSUN4Q96CB9 384 aaKnown RBP24.94■■□□□ 1.58
VPS53-210ENST00000571456 MYH7P12883 1935 aa24.94■■□□□ 1.58
VPS53-210ENST00000571456 GAKO14976 1311 aa24.93■■□□□ 1.58
VPS53-210ENST00000571456 DLL1O00548 723 aa24.93■■□□□ 1.58
VPS53-210ENST00000571456 MECOMQ03112 1051 aa24.93■■□□□ 1.58
VPS53-210ENST00000571456 ZSCAN25Q6NSZ9 544 aa24.93■■□□□ 1.58
VPS53-210ENST00000571456 TBC1D9Q6ZT07 1266 aa24.93■■□□□ 1.58
VPS53-210ENST00000571456 PTPN22Q9Y2R2 807 aa24.93■■□□□ 1.58
VPS53-210ENST00000571456 MYO5AQ9Y4I1 1855 aaKnown RBP24.93■■□□□ 1.58
VPS53-210ENST00000571456 GOLIM4O00461 696 aa24.92■■□□□ 1.58
VPS53-210ENST00000571456 GRIK5Q16478 980 aa24.92■■□□□ 1.58
VPS53-210ENST00000571456 NBPF9Q3BBW0 867 aa24.92■■□□□ 1.58
VPS53-210ENST00000571456 SPRYD7Q5W111 196 aa24.92■■□□□ 1.58
VPS53-210ENST00000571456 OTUD7AQ8TE49 926 aaPredicted RBP24.92■■□□□ 1.58
VPS53-210ENST00000571456 RANBP2P49792 3224 aaKnown RBP24.92■■□□□ 1.58
VPS53-210ENST00000571456 MROH7-TTC4A0A0A0MT08 1334 aa24.91■■□□□ 1.58
VPS53-210ENST00000571456 IDH1O75874 414 aaKnown RBP24.91■■□□□ 1.58
VPS53-210ENST00000571456 NAA16Q6N069 864 aaPredicted RBP24.91■■□□□ 1.58
VPS53-210ENST00000571456 ARMC9Q7Z3E5 817 aa24.91■■□□□ 1.58
VPS53-210ENST00000571456 APOBEC3FQ8IUX4 373 aaKnown RBP24.91■■□□□ 1.58
VPS53-210ENST00000571456 PLEKHM2Q8IWE5 1019 aa24.91■■□□□ 1.58
VPS53-210ENST00000571456 NOL10Q9BSC4 688 aaKnown RBP24.91■■□□□ 1.58
VPS53-210ENST00000571456 PIH1D3Q9NQM4 214 aaKnown RBP24.91■■□□□ 1.58
VPS53-210ENST00000571456 INHBEP58166 350 aa24.9■■□□□ 1.58
VPS53-210ENST00000571456 TNFAIP1Q13829 316 aa24.9■■□□□ 1.58
VPS53-210ENST00000571456 IFNL1Q8IU54 200 aa24.9■■□□□ 1.58
VPS53-210ENST00000571456 ERO1AQ96HE7 468 aa24.9■■□□□ 1.58
VPS53-210ENST00000571456 TMOD2Q9NZR1 351 aa24.9■■□□□ 1.58
VPS53-210ENST00000571456 DAGLAQ9Y4D2 1042 aa24.9■■□□□ 1.58
VPS53-210ENST00000571456 MANSC4A6NHS7 340 aaPredicted RBP24.89■■□□□ 1.58
VPS53-210ENST00000571456 BAG3O95817 575 aa24.89■■□□□ 1.58
VPS53-210ENST00000571456 PLCG2P16885 1265 aa24.89■■□□□ 1.58
VPS53-210ENST00000571456 FKBP1CQ5VVH2 108 aa24.89■■□□□ 1.58
VPS53-210ENST00000571456 KBTBD3Q8NAB2 608 aa24.89■■□□□ 1.58
VPS53-210ENST00000571456 PRMT6Q96LA8 375 aaPredicted RBP24.89■■□□□ 1.58
VPS53-210ENST00000571456 TMEM106CQ9BVX2 250 aa24.89■■□□□ 1.58
VPS53-210ENST00000571456 ANTXR1Q9H6X2 564 aa24.89■■□□□ 1.58
VPS53-210ENST00000571456 GPR75-ASB3A0A0A6YYF3 556 aa24.88■■□□□ 1.57
VPS53-210ENST00000571456 ZFYP08048 801 aaPredicted RBP24.88■■□□□ 1.57
VPS53-210ENST00000571456 DIXDC1Q155Q3 683 aa24.88■■□□□ 1.57
VPS53-210ENST00000571456 SPDYE2Q495Y8 402 aa24.88■■□□□ 1.57
VPS53-210ENST00000571456 LDLRAD1Q5T700 205 aa24.88■■□□□ 1.57
VPS53-210ENST00000571456 APOBEC3HQ6NTF7 200 aaKnown RBP24.88■■□□□ 1.57
VPS53-210ENST00000571456 EVI5LQ96CN4 794 aa24.88■■□□□ 1.57
VPS53-210ENST00000571456 PRKG1Q13976 671 aa24.87■■□□□ 1.57
VPS53-210ENST00000571456 PPP2R3BQ9Y5P8 575 aa24.87■■□□□ 1.57
VPS53-210ENST00000571456 LAMB1P07942 1786 aa24.87■■□□□ 1.57
VPS53-210ENST00000571456 H0YGN5 161 aa24.86■■□□□ 1.57
VPS53-210ENST00000571456 TNNI2P48788 182 aa24.86■■□□□ 1.57
VPS53-210ENST00000571456 PPP4CP60510 307 aa24.86■■□□□ 1.57
VPS53-210ENST00000571456 UBE3CQ15386 1083 aa24.86■■□□□ 1.57
VPS53-210ENST00000571456 SLC9C2Q5TAH2 1124 aa24.86■■□□□ 1.57
VPS53-210ENST00000571456 TSHZ3Q63HK5 1081 aa24.86■■□□□ 1.57
VPS53-210ENST00000571456 CD99L2Q8TCZ2 262 aa24.86■■□□□ 1.57
VPS53-210ENST00000571456 OTUD5Q96G74 571 aa24.86■■□□□ 1.57
VPS53-210ENST00000571456 EFCC1Q9HA90 598 aa24.86■■□□□ 1.57
VPS53-210ENST00000571456 NDUFB9Q9Y6M9 179 aa24.86■■□□□ 1.57
VPS53-210ENST00000571456 COL6A3P12111 3177 aa24.85■■□□□ 1.57
VPS53-210ENST00000571456 RFX7Q2KHR2 1363 aa24.85■■□□□ 1.57
VPS53-210ENST00000571456 MAGEB6Q8N7X4 407 aa24.85■■□□□ 1.57
VPS53-210ENST00000571456 SLC17A8Q8NDX2 589 aa24.85■■□□□ 1.57
VPS53-210ENST00000571456 ZNF384Q8TF68 577 aa24.85■■□□□ 1.57
VPS53-210ENST00000571456 ZNF70Q9UC06 446 aaPredicted RBP24.85■■□□□ 1.57
VPS53-210ENST00000571456 AK9Q5TCS8 1911 aa24.84■■□□□ 1.57
VPS53-210ENST00000571456 PDE6AP16499 860 aa24.84■■□□□ 1.57
VPS53-210ENST00000571456 CYP7A1P22680 504 aa24.84■■□□□ 1.57
VPS53-210ENST00000571456 PDE4AP27815 886 aa24.84■■□□□ 1.57
VPS53-210ENST00000571456 ANGEL1Q9UNK9 670 aaKnown RBP24.84■■□□□ 1.57
VPS53-210ENST00000571456 IGF2BP3O00425 579 aaKnown RBP eCLIP24.83■■□□□ 1.57
VPS53-210ENST00000571456 NPM3O75607 178 aaKnown RBP24.83■■□□□ 1.57
VPS53-210ENST00000571456 ADD2P35612 726 aa24.83■■□□□ 1.57
VPS53-210ENST00000571456 BTDP43251 543 aa24.83■■□□□ 1.57
VPS53-210ENST00000571456 FAM83AQ86UY5 434 aa24.83■■□□□ 1.57
VPS53-210ENST00000571456 SLC10A4Q96EP9 437 aa24.83■■□□□ 1.57
VPS53-210ENST00000571456 ZNF333Q96JL9 665 aa24.83■■□□□ 1.57
VPS53-210ENST00000571456 TDRD3Q9H7E2 651 aaKnown RBP24.83■■□□□ 1.57
VPS53-210ENST00000571456 ZBTB48P10074 688 aaPredicted RBP24.82■■□□□ 1.56
VPS53-210ENST00000571456 EDC3Q96F86 508 aaKnown RBP24.82■■□□□ 1.56
VPS53-210ENST00000571456 CDC42EP5Q6NZY7 148 aa24.81■■□□□ 1.56
VPS53-210ENST00000571456 FSD1Q9BTV5 496 aa24.81■■□□□ 1.56
VPS53-210ENST00000571456 IDI2Q9BXS1 227 aa24.81■■□□□ 1.56
VPS53-210ENST00000571456 USP40Q9NVE5 1235 aa24.81■■□□□ 1.56
VPS53-210ENST00000571456 ZNF532Q9HCE3 1301 aa24.81■■□□□ 1.56
VPS53-210ENST00000571456 CRHR2Q13324 411 aa24.8■■□□□ 1.56
VPS53-210ENST00000571456 TTC22Q5TAA0 569 aa24.8■■□□□ 1.56
VPS53-210ENST00000571456 VEZTQ9HBM0 779 aa24.8■■□□□ 1.56
VPS53-210ENST00000571456 PCDHAC2Q9Y5I4 1007 aa24.8■■□□□ 1.56
VPS53-210ENST00000571456 RPAP1Q9BWH6 1393 aaPredicted RBP24.8■■□□□ 1.56
VPS53-210ENST00000571456 TCRBV5S4A2TA0A5A2 114 aa24.79■■□□□ 1.56
VPS53-210ENST00000571456 TRIM6-TRIM34B2RNG4 842 aa24.79■■□□□ 1.56
VPS53-210ENST00000571456 HIP1O00291 1037 aa24.79■■□□□ 1.56
VPS53-210ENST00000571456 RNF113AO15541 343 aaKnown RBP24.79■■□□□ 1.56
VPS53-210ENST00000571456 ENTPD3O75355 529 aa24.79■■□□□ 1.56
VPS53-210ENST00000571456 SP3Q02447 781 aa24.79■■□□□ 1.56
VPS53-210ENST00000571456 OTUD7BQ6GQQ9 843 aa24.79■■□□□ 1.56
VPS53-210ENST00000571456 CHRDL2Q6WN34 429 aa24.79■■□□□ 1.56
VPS53-210ENST00000571456 HOOK2Q96ED9 719 aa24.79■■□□□ 1.56
VPS53-210ENST00000571456 WNK4Q96J92 1243 aa24.79■■□□□ 1.56
VPS53-210ENST00000571456 CLRN2A0PK11 232 aa24.78■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms