RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 MED23Q9ULK4 1368 aa9.11□□□□□ -0.95
CHD3-213ENST00000571249 GRXCR1A8MXD5 290 aa9.1□□□□□ -0.95
CHD3-213ENST00000571249 PRKAR2AP13861 404 aaKnown RBP9.1□□□□□ -0.95
CHD3-213ENST00000571249 EIF2S2P20042 333 aaKnown RBP9.1□□□□□ -0.95
CHD3-213ENST00000571249 ITGB8P26012 769 aa9.1□□□□□ -0.95
CHD3-213ENST00000571249 RTP1P59025 263 aa9.1□□□□□ -0.95
CHD3-213ENST00000571249 NEUROD2Q15784 382 aa9.1□□□□□ -0.95
CHD3-213ENST00000571249 XAGE3Q8WTP9 111 aa9.1□□□□□ -0.95
CHD3-213ENST00000571249 TRIB2Q92519 343 aa9.1□□□□□ -0.95
CHD3-213ENST00000571249 JAG2Q9Y219 1238 aa9.1□□□□□ -0.95
CHD3-213ENST00000571249 ATP11BQ9Y2G3 1177 aa9.1□□□□□ -0.95
CHD3-213ENST00000571249 ZNF318Q5VUA4 2279 aa9.1□□□□□ -0.95
CHD3-213ENST00000571249 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.09□□□□□ -0.95
CHD3-213ENST00000571249 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.09□□□□□ -0.95
CHD3-213ENST00000571249 TRIM43BA6NCK2 446 aa9.09□□□□□ -0.95
CHD3-213ENST00000571249 CCND3P30281 292 aaPredicted RBP9.09□□□□□ -0.95
CHD3-213ENST00000571249 INPP5BP32019 993 aa9.09□□□□□ -0.95
CHD3-213ENST00000571249 PPATQ06203 517 aa9.09□□□□□ -0.95
CHD3-213ENST00000571249 MAP3K21Q5TCX8 1036 aa9.09□□□□□ -0.95
CHD3-213ENST00000571249 PNISRQ8TF01 805 aaKnown RBP9.09□□□□□ -0.95
CHD3-213ENST00000571249 JARID2Q92833 1246 aaPredicted RBP9.09□□□□□ -0.95
CHD3-213ENST00000571249 TRIM43Q96BQ3 446 aaPredicted RBP9.09□□□□□ -0.95
CHD3-213ENST00000571249 TSPYL2Q9H2G4 693 aaPredicted RBP9.09□□□□□ -0.95
CHD3-213ENST00000571249 KCNH4Q9UQ05 1017 aa9.09□□□□□ -0.95
CHD3-213ENST00000571249 UNC79Q9P2D8 2635 aa9.09□□□□□ -0.95
CHD3-213ENST00000571249 DNAH14Q0VDD8 3507 aa9.09□□□□□ -0.95
CHD3-213ENST00000571249 PRRC2BQ5JSZ5 2229 aaKnown RBP9.08□□□□□ -0.96
CHD3-213ENST00000571249 ACACBO00763 2458 aa9.08□□□□□ -0.96
CHD3-213ENST00000571249 HTATSF1O43719 755 aaKnown RBP9.08□□□□□ -0.96
CHD3-213ENST00000571249 CCT4P50991 539 aaKnown RBP9.08□□□□□ -0.96
CHD3-213ENST00000571249 SKIV2LQ15477 1246 aaKnown RBP9.08□□□□□ -0.96
CHD3-213ENST00000571249 AAK1Q2M2I8 961 aa9.08□□□□□ -0.96
CHD3-213ENST00000571249 ANKRD13CQ8N6S4 541 aa9.08□□□□□ -0.96
CHD3-213ENST00000571249 PBX4Q9BYU1 374 aa9.08□□□□□ -0.96
CHD3-213ENST00000571249 RSPH6AQ9H0K4 717 aa9.08□□□□□ -0.96
CHD3-213ENST00000571249 MINPP1Q9UNW1 487 aa9.08□□□□□ -0.96
CHD3-213ENST00000571249 SETXQ7Z333 2677 aaKnown RBP9.08□□□□□ -0.96
CHD3-213ENST00000571249 FASNP49327 2511 aaKnown RBP9.08□□□□□ -0.96
CHD3-213ENST00000571249 CACNA1HO95180 2353 aa9.08□□□□□ -0.96
CHD3-213ENST00000571249 ERC2O15083 957 aa9.07□□□□□ -0.96
CHD3-213ENST00000571249 CACNB3P54284 484 aa9.07□□□□□ -0.96
CHD3-213ENST00000571249 CACNB2Q08289 660 aaPredicted RBP9.07□□□□□ -0.96
CHD3-213ENST00000571249 TNFAIP1Q13829 316 aa9.07□□□□□ -0.96
CHD3-213ENST00000571249 MIGA2Q7L4E1 593 aa9.07□□□□□ -0.96
CHD3-213ENST00000571249 ANKRD18AQ8IVF6 992 aa9.07□□□□□ -0.96
CHD3-213ENST00000571249 ISCA1Q9BUE6 129 aa9.07□□□□□ -0.96
CHD3-213ENST00000571249 BSDC1Q9NW68 430 aaPredicted RBP9.07□□□□□ -0.96
CHD3-213ENST00000571249 MAST2Q6P0Q8 1798 aa9.07□□□□□ -0.96
CHD3-213ENST00000571249 ECM29Q5VYK3 1845 aa9.06□□□□□ -0.96
CHD3-213ENST00000571249 WDR87Q6ZQQ6 2873 aa9.06□□□□□ -0.96
CHD3-213ENST00000571249 CYP2B6P20813 491 aa9.06□□□□□ -0.96
CHD3-213ENST00000571249 PDLIM7Q9NR12 457 aa9.06□□□□□ -0.96
CHD3-213ENST00000571249 DAGLAQ9Y4D2 1042 aa9.06□□□□□ -0.96
CHD3-213ENST00000571249 BRWD1Q9NSI6 2320 aa9.06□□□□□ -0.96
CHD3-213ENST00000571249 TRIOO75962 3097 aa9.06□□□□□ -0.96
CHD3-213ENST00000571249 GFRA3O60609 400 aa9.05□□□□□ -0.96
CHD3-213ENST00000571249 TRIM60Q495X7 471 aa9.05□□□□□ -0.96
CHD3-213ENST00000571249 CCDC129Q6ZRS4 1044 aa9.05□□□□□ -0.96
CHD3-213ENST00000571249 KCNH6Q9H252 994 aa9.05□□□□□ -0.96
CHD3-213ENST00000571249 CD209Q9NNX6 404 aa9.05□□□□□ -0.96
CHD3-213ENST00000571249 FAM186AA6NE01 2351 aa9.05□□□□□ -0.96
CHD3-213ENST00000571249 SNAP23O00161 211 aa9.04□□□□□ -0.96
CHD3-213ENST00000571249 RGS20O76081 388 aa9.04□□□□□ -0.96
CHD3-213ENST00000571249 CSPP1Q1MSJ5 1256 aa9.04□□□□□ -0.96
CHD3-213ENST00000571249 CCDC152Q4G0S7 254 aa9.04□□□□□ -0.96
CHD3-213ENST00000571249 DZIP1LQ8IYY4 767 aaKnown RBP9.04□□□□□ -0.96
CHD3-213ENST00000571249 SMCR8Q8TEV9 937 aaPredicted RBP9.04□□□□□ -0.96
CHD3-213ENST00000571249 TRANK1O15050 2925 aa9.03□□□□□ -0.96
CHD3-213ENST00000571249 PLXNA1Q9UIW2 1896 aa9.03□□□□□ -0.96
CHD3-213ENST00000571249 ABCB7O75027 752 aa9.03□□□□□ -0.96
CHD3-213ENST00000571249 CCL14Q16627 93 aa9.03□□□□□ -0.96
CHD3-213ENST00000571249 CC2D1BQ5T0F9 858 aaKnown RBP9.03□□□□□ -0.96
CHD3-213ENST00000571249 SLC39A5Q6ZMH5 540 aa9.03□□□□□ -0.96
CHD3-213ENST00000571249 GADL1Q6ZQY3 521 aa9.03□□□□□ -0.96
CHD3-213ENST00000571249 ERMP1Q7Z2K6 904 aa9.03□□□□□ -0.96
CHD3-213ENST00000571249 PRSS33Q8NF86 280 aa9.03□□□□□ -0.96
CHD3-213ENST00000571249 KCNV2Q8TDN2 545 aa9.03□□□□□ -0.96
CHD3-213ENST00000571249 GVINP1Q7Z2Y8 2422 aa9.03□□□□□ -0.96
CHD3-213ENST00000571249 LRRC37A2A6NM11 1700 aa9.02□□□□□ -0.96
CHD3-213ENST00000571249 PEX10O60683 326 aa9.02□□□□□ -0.97
CHD3-213ENST00000571249 COL9A2Q14055 689 aaPredicted RBP9.02□□□□□ -0.97
CHD3-213ENST00000571249 KCTD2Q14681 263 aa9.02□□□□□ -0.97
CHD3-213ENST00000571249 IER5LQ5T953 404 aa9.02□□□□□ -0.97
CHD3-213ENST00000571249 KRT40Q6A162 431 aa9.02□□□□□ -0.97
CHD3-213ENST00000571249 HFE2Q6ZVN8 426 aa9.02□□□□□ -0.97
CHD3-213ENST00000571249 NKX2-4Q9H2Z4 354 aa9.02□□□□□ -0.97
CHD3-213ENST00000571249 FAM86C1Q9NVL1 165 aa9.02□□□□□ -0.97
CHD3-213ENST00000571249 CLSPNQ9HAW4 1339 aa9.02□□□□□ -0.97
CHD3-213ENST00000571249 RFXAPO00287 272 aa9.01□□□□□ -0.97
CHD3-213ENST00000571249 CXCL11O14625 94 aa9.01□□□□□ -0.97
CHD3-213ENST00000571249 TNNI2P48788 182 aa9.01□□□□□ -0.97
CHD3-213ENST00000571249 CNGB1Q14028 1251 aaPredicted RBP9.01□□□□□ -0.97
CHD3-213ENST00000571249 GJC2Q5T442 439 aaPredicted RBP9.01□□□□□ -0.97
CHD3-213ENST00000571249 PLBD2Q8NHP8 589 aa9.01□□□□□ -0.97
CHD3-213ENST00000571249 CCER1Q8TC90 406 aaPredicted RBP9.01□□□□□ -0.97
CHD3-213ENST00000571249 HERVK_113Q902F9 699 aa9.01□□□□□ -0.97
CHD3-213ENST00000571249 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.01□□□□□ -0.979e-7■■■■■ 27.7
CHD3-213ENST00000571249 RALYQ9UKM9 306 aaKnown RBP9.01□□□□□ -0.97
CHD3-213ENST00000571249 LEMD3Q9Y2U8 911 aa9.01□□□□□ -0.97
CHD3-213ENST00000571249 STK24Q9Y6E0 443 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms