RNA–Protein interactions for RNA: ENST00000570023.1

VPS39-212, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 337 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-212ENST00000570023 STK35Q8TDR2 534 aa5.39□□□□□ -1.55
VPS39-212ENST00000570023 WDR18Q9BV38 432 aa5.39□□□□□ -1.55
VPS39-212ENST00000570023 EMILIN2Q9BXX0 1053 aa5.39□□□□□ -1.55
VPS39-212ENST00000570023 YY1AP1Q9H869 796 aa5.39□□□□□ -1.55
VPS39-212ENST00000570023 KCNG1Q9UIX4 513 aa5.39□□□□□ -1.55
VPS39-212ENST00000570023 HDAC5Q9UQL6 1122 aa5.39□□□□□ -1.55
VPS39-212ENST00000570023 GAS2O43903 313 aaKnown RBP5.38□□□□□ -1.55
VPS39-212ENST00000570023 ZNF862O60290 1169 aa5.38□□□□□ -1.55
VPS39-212ENST00000570023 LETM1O95202 739 aaPredicted RBP5.38□□□□□ -1.55
VPS39-212ENST00000570023 APPP05067 770 aa5.38□□□□□ -1.55
VPS39-212ENST00000570023 MAP4P27816 1152 aaKnown RBP5.38□□□□□ -1.55
VPS39-212ENST00000570023 ITGAEP38570 1179 aa5.38□□□□□ -1.55
VPS39-212ENST00000570023 KIF4BQ2VIQ3 1234 aa5.38□□□□□ -1.55
VPS39-212ENST00000570023 SCARA3Q6AZY7 606 aa5.38□□□□□ -1.55
VPS39-212ENST00000570023 TPTE2Q6XPS3 522 aa5.38□□□□□ -1.55
VPS39-212ENST00000570023 BEND4Q6ZU67 534 aa5.38□□□□□ -1.55
VPS39-212ENST00000570023 SV2BQ7L1I2 683 aa5.38□□□□□ -1.55
VPS39-212ENST00000570023 TMC4Q7Z404 712 aa5.38□□□□□ -1.55
VPS39-212ENST00000570023 TRIM42Q8IWZ5 723 aa5.38□□□□□ -1.55
VPS39-212ENST00000570023 EZH1Q92800 747 aaPredicted RBP5.38□□□□□ -1.55
VPS39-212ENST00000570023 DNAJC2Q99543 621 aaKnown RBP5.38□□□□□ -1.55
VPS39-212ENST00000570023 C7orf69Q9H7B7 122 aa5.38□□□□□ -1.55
VPS39-212ENST00000570023 RAD18Q9NS91 495 aa5.38□□□□□ -1.55
VPS39-212ENST00000570023 PCDHGC5Q9Y5F6 944 aa5.38□□□□□ -1.55
VPS39-212ENST00000570023 HMX2A2RU54 273 aa5.37□□□□□ -1.55
VPS39-212ENST00000570023 FBXO24O75426 580 aa5.37□□□□□ -1.55
VPS39-212ENST00000570023 PAGE1O75459 146 aa5.37□□□□□ -1.55
VPS39-212ENST00000570023 SLFN14P0C7P3 912 aa5.37□□□□□ -1.55
VPS39-212ENST00000570023 PDE3AQ14432 1141 aa5.37□□□□□ -1.55
VPS39-212ENST00000570023 SGO2Q562F6 1265 aa5.37□□□□□ -1.55
VPS39-212ENST00000570023 AKAP4Q5JQC9 854 aa5.37□□□□□ -1.55
VPS39-212ENST00000570023 TMCO4Q5TGY1 634 aa5.37□□□□□ -1.55
VPS39-212ENST00000570023 RNF43Q68DV7 783 aa5.37□□□□□ -1.55
VPS39-212ENST00000570023 WDR89Q96FK6 387 aaPredicted RBP5.37□□□□□ -1.55
VPS39-212ENST00000570023 PRDM10Q9NQV6 1147 aa5.37□□□□□ -1.55
VPS39-212ENST00000570023 CRIM1Q9NZV1 1036 aa5.37□□□□□ -1.55
VPS39-212ENST00000570023 PPP1R9AQ9ULJ8 1098 aa5.37□□□□□ -1.55
VPS39-212ENST00000570023 SAMM50Q9Y512 469 aa5.37□□□□□ -1.55
VPS39-212ENST00000570023 ACTL7BQ9Y614 415 aa5.37□□□□□ -1.55
VPS39-212ENST00000570023 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP5.36□□□□□ -1.55
VPS39-212ENST00000570023 IGLV1-40P01703 118 aa5.36□□□□□ -1.55
VPS39-212ENST00000570023 LIG1P18858 919 aa5.36□□□□□ -1.55
VPS39-212ENST00000570023 USP11P51784 963 aa5.36□□□□□ -1.55
VPS39-212ENST00000570023 HNRNPUQ00839 825 aaKnown RBP eCLIP5.36□□□□□ -1.55
VPS39-212ENST00000570023 TAGLNQ01995 201 aaKnown RBP5.36□□□□□ -1.55
VPS39-212ENST00000570023 NFIAQ12857 509 aa5.36□□□□□ -1.55
VPS39-212ENST00000570023 PSMD2Q13200 908 aa5.36□□□□□ -1.55
VPS39-212ENST00000570023 CDPF1Q6NVV7 123 aa5.36□□□□□ -1.55
VPS39-212ENST00000570023 KCNF1Q9H3M0 494 aa5.36□□□□□ -1.55
VPS39-212ENST00000570023 RRAGDQ9NQL2 400 aaPredicted RBP5.36□□□□□ -1.55
VPS39-212ENST00000570023 CYP8B1Q9UNU6 501 aa5.36□□□□□ -1.55
VPS39-212ENST00000570023 EEA1Q15075 1411 aa5.35□□□□□ -1.55
VPS39-212ENST00000570023 TMPRSS2O15393 492 aa5.35□□□□□ -1.55
VPS39-212ENST00000570023 MAFGO15525 162 aa5.35□□□□□ -1.55
VPS39-212ENST00000570023 TRIM37O94972 964 aa5.35□□□□□ -1.55
VPS39-212ENST00000570023 CTSHP09668 335 aa5.35□□□□□ -1.55
VPS39-212ENST00000570023 XPCQ01831 940 aaPredicted RBP5.35□□□□□ -1.55
VPS39-212ENST00000570023 ID3Q02535 119 aa5.35□□□□□ -1.55
VPS39-212ENST00000570023 LRRC14Q15048 493 aa5.35□□□□□ -1.55
VPS39-212ENST00000570023 RASIP1Q5U651 963 aa5.35□□□□□ -1.55
VPS39-212ENST00000570023 DYMQ7RTS9 669 aa5.35□□□□□ -1.55
VPS39-212ENST00000570023 GRIN3AQ8TCU5 1115 aa5.35□□□□□ -1.55
VPS39-212ENST00000570023 FBLIM1Q8WUP2 373 aa5.35□□□□□ -1.55
VPS39-212ENST00000570023 KCNB2Q92953 911 aa5.35□□□□□ -1.55
VPS39-212ENST00000570023 DBNDD2Q9BQY9 259 aa5.35□□□□□ -1.55
VPS39-212ENST00000570023 YIPF2Q9BWQ6 316 aa5.35□□□□□ -1.55
VPS39-212ENST00000570023 ZC3H12CQ9C0D7 883 aaKnown RBP5.35□□□□□ -1.55
VPS39-212ENST00000570023 ACSS3Q9H6R3 686 aa5.35□□□□□ -1.55
VPS39-212ENST00000570023 FAM105AQ9NUU6 356 aa5.35□□□□□ -1.55
VPS39-212ENST00000570023 GEMIN8Q9NWZ8 242 aaKnown RBP5.35□□□□□ -1.55
VPS39-212ENST00000570023 RNF112Q9ULX5 631 aa5.35□□□□□ -1.55
VPS39-212ENST00000570023 TTF2Q9UNY4 1162 aaKnown RBP5.35□□□□□ -1.55
VPS39-212ENST00000570023 USP31Q70CQ4 1352 aa5.34□□□□□ -1.55
VPS39-212ENST00000570023 FAM95CA0A1B0GW59 222 aa5.34□□□□□ -1.55
VPS39-212ENST00000570023 CCER2I3L3R5 266 aa5.34□□□□□ -1.55
VPS39-212ENST00000570023 TCERG1O14776 1098 aaKnown RBP5.34□□□□□ -1.55
VPS39-212ENST00000570023 CELA3AP09093 270 aa5.34□□□□□ -1.55
VPS39-212ENST00000570023 ASPAP45381 313 aa5.34□□□□□ -1.55
VPS39-212ENST00000570023 ST13P50502 369 aaKnown RBP5.34□□□□□ -1.55
VPS39-212ENST00000570023 ZC3H12AQ5D1E8 599 aaKnown RBP5.34□□□□□ -1.55
VPS39-212ENST00000570023 DNTTIP2Q5QJE6 756 aaKnown RBP5.34□□□□□ -1.55
VPS39-212ENST00000570023 ZMYM1Q5SVZ6 1142 aa5.34□□□□□ -1.55
VPS39-212ENST00000570023 CC2D1BQ5T0F9 858 aaKnown RBP5.34□□□□□ -1.55
VPS39-212ENST00000570023 PCNX4Q63HM2 1172 aa5.34□□□□□ -1.55
VPS39-212ENST00000570023 MAP1SQ66K74 1059 aaPredicted RBP5.34□□□□□ -1.55
VPS39-212ENST00000570023 PAOXQ6QHF9 649 aa5.34□□□□□ -1.55
VPS39-212ENST00000570023 GPBAR1Q8TDU6 330 aa5.34□□□□□ -1.55
VPS39-212ENST00000570023 FRAT1Q92837 279 aaPredicted RBP5.34□□□□□ -1.55
VPS39-212ENST00000570023 FAM161BQ96MY7 647 aa5.34□□□□□ -1.55
VPS39-212ENST00000570023 DISC1Q9NRI5 854 aa5.34□□□□□ -1.55
VPS39-212ENST00000570023 LOC100996750A0A140TA64 210 aa5.33□□□□□ -1.56
VPS39-212ENST00000570023 SORBS3O60504 671 aa5.33□□□□□ -1.56
VPS39-212ENST00000570023 RXRBP28702 533 aa5.33□□□□□ -1.56
VPS39-212ENST00000570023 RPS26P62854 115 aaKnown RBP5.33□□□□□ -1.56
VPS39-212ENST00000570023 ERVK-24P63145 666 aa5.33□□□□□ -1.56
VPS39-212ENST00000570023 MAP7Q14244 749 aa5.33□□□□□ -1.56
VPS39-212ENST00000570023 RALBP1Q15311 655 aa5.33□□□□□ -1.56
VPS39-212ENST00000570023 TAF1CQ15572 869 aaPredicted RBP5.33□□□□□ -1.56
VPS39-212ENST00000570023 CCDC85BQ15834 202 aaPredicted RBP5.33□□□□□ -1.56
VPS39-212ENST00000570023 LLGL2Q6P1M3 1020 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms