RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 SSU72Q9NP77 194 aaKnown RBP4.44□□□□□ -1.7
VPS35-208ENST00000568612 KRT82Q9NSB4 513 aa4.44□□□□□ -1.7
VPS35-208ENST00000568612 ATG3Q9NT62 314 aa4.44□□□□□ -1.7
VPS35-208ENST00000568612 BCCIPQ9P287 314 aaKnown RBP eCLIP4.44□□□□□ -1.7
VPS35-208ENST00000568612 CSADQ9Y600 493 aa4.44□□□□□ -1.7
VPS35-208ENST00000568612 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP4.43□□□□□ -1.7
VPS35-208ENST00000568612 HCLS1P14317 486 aaPredicted RBP4.43□□□□□ -1.7
VPS35-208ENST00000568612 ERCC3P19447 782 aa4.43□□□□□ -1.7
VPS35-208ENST00000568612 TTLL4Q14679 1199 aa4.43□□□□□ -1.7
VPS35-208ENST00000568612 KIF4BQ2VIQ3 1234 aa4.43□□□□□ -1.7
VPS35-208ENST00000568612 PCNX4Q63HM2 1172 aa4.43□□□□□ -1.7
VPS35-208ENST00000568612 DIEXFQ68CQ4 756 aaKnown RBP4.43□□□□□ -1.7
VPS35-208ENST00000568612 FANCD2OSQ96PS1 177 aa4.43□□□□□ -1.7
VPS35-208ENST00000568612 BCL2L13Q9BXK5 485 aa4.43□□□□□ -1.7
VPS35-208ENST00000568612 OSBPL1AQ9BXW6 950 aa4.43□□□□□ -1.7
VPS35-208ENST00000568612 SEMA6CQ9H3T2 930 aa4.43□□□□□ -1.7
VPS35-208ENST00000568612 PCMTD2Q9NV79 361 aa4.43□□□□□ -1.7
VPS35-208ENST00000568612 CRIM1Q9NZV1 1036 aa4.43□□□□□ -1.7
VPS35-208ENST00000568612 VTI1BQ9UEU0 232 aa4.43□□□□□ -1.7
VPS35-208ENST00000568612 RNF112Q9ULX5 631 aa4.43□□□□□ -1.7
VPS35-208ENST00000568612 PCDHA4Q9UN74 947 aa4.43□□□□□ -1.7
VPS35-208ENST00000568612 SHROOM4Q9ULL8 1493 aa4.43□□□□□ -1.7
VPS35-208ENST00000568612 DCDC2CA8MYV0 355 aa4.42□□□□□ -1.7
VPS35-208ENST00000568612 SORBS3O60504 671 aa4.42□□□□□ -1.7
VPS35-208ENST00000568612 CDK11BP21127 795 aaKnown RBP4.42□□□□□ -1.7
VPS35-208ENST00000568612 BMP6P22004 513 aa4.42□□□□□ -1.7
VPS35-208ENST00000568612 GRIK1P39086 918 aa4.42□□□□□ -1.7
VPS35-208ENST00000568612 DAB2P98082 770 aa4.42□□□□□ -1.7
VPS35-208ENST00000568612 MEI1Q5TIA1 1274 aa4.42□□□□□ -1.7
VPS35-208ENST00000568612 TTBK2Q6IQ55 1244 aa4.42□□□□□ -1.7
VPS35-208ENST00000568612 SV2BQ7L1I2 683 aa4.42□□□□□ -1.7
VPS35-208ENST00000568612 FBXO33Q7Z6M2 555 aa4.42□□□□□ -1.7
VPS35-208ENST00000568612 NBPF11Q86T75 865 aa4.42□□□□□ -1.7
VPS35-208ENST00000568612 SLC51AQ86UW1 340 aa4.42□□□□□ -1.7
VPS35-208ENST00000568612 ZDHHC13Q8IUH4 622 aa4.42□□□□□ -1.7
VPS35-208ENST00000568612 ELMO3Q96BJ8 720 aa4.42□□□□□ -1.7
VPS35-208ENST00000568612 ACSS3Q9H6R3 686 aa4.42□□□□□ -1.7
VPS35-208ENST00000568612 ZFP64Q9NPA5 681 aa4.42□□□□□ -1.7
VPS35-208ENST00000568612 PRKAG2Q9UGJ0 569 aa4.42□□□□□ -1.7
VPS35-208ENST00000568612 LEMD3Q9Y2U8 911 aa4.42□□□□□ -1.7
VPS35-208ENST00000568612 PRAMEF27A3QJZ7 478 aa4.41□□□□□ -1.7
VPS35-208ENST00000568612 COBLO75128 1261 aa4.41□□□□□ -1.7
VPS35-208ENST00000568612 TRIM37O94972 964 aa4.41□□□□□ -1.7
VPS35-208ENST00000568612 F13BP05160 661 aa4.41□□□□□ -1.7
VPS35-208ENST00000568612 ADMP35318 185 aa4.41□□□□□ -1.7
VPS35-208ENST00000568612 ZNF252P-AS1Q0IIN9 211 aa4.41□□□□□ -1.7
VPS35-208ENST00000568612 LRP8Q14114 963 aa4.41□□□□□ -1.7
VPS35-208ENST00000568612 ARTNQ5T4W7 220 aa4.41□□□□□ -1.7
VPS35-208ENST00000568612 RASIP1Q5U651 963 aa4.41□□□□□ -1.7
VPS35-208ENST00000568612 TMC4Q7Z404 712 aa4.41□□□□□ -1.7
VPS35-208ENST00000568612 C12orf40Q86WS4 652 aa4.41□□□□□ -1.7
VPS35-208ENST00000568612 SMYD4Q8IYR2 804 aaPredicted RBP4.41□□□□□ -1.7
VPS35-208ENST00000568612 GIPC2Q8TF65 315 aa4.41□□□□□ -1.7
VPS35-208ENST00000568612 EZH1Q92800 747 aaPredicted RBP4.41□□□□□ -1.7
VPS35-208ENST00000568612 LRRC4CQ9HCJ2 640 aa4.41□□□□□ -1.7
VPS35-208ENST00000568612 DISC1Q9NRI5 854 aa4.41□□□□□ -1.7
VPS35-208ENST00000568612 CYP8B1Q9UNU6 501 aa4.41□□□□□ -1.7
VPS35-208ENST00000568612 SYNGAP1Q96PV0 1343 aa4.41□□□□□ -1.7
VPS35-208ENST00000568612 FAM170BA6NMN3 283 aa4.4□□□□□ -1.71
VPS35-208ENST00000568612 F6X3S4 739 aa4.4□□□□□ -1.71
VPS35-208ENST00000568612 DYNC1LI2O43237 492 aaPredicted RBP4.4□□□□□ -1.71
VPS35-208ENST00000568612 HYAL3O43820 417 aaPredicted RBP4.4□□□□□ -1.71
VPS35-208ENST00000568612 ITGAEP38570 1179 aa4.4□□□□□ -1.71
VPS35-208ENST00000568612 CDK5R2Q13319 367 aa4.4□□□□□ -1.71
VPS35-208ENST00000568612 TAF1CQ15572 869 aaPredicted RBP4.4□□□□□ -1.71
VPS35-208ENST00000568612 ZC3H12AQ5D1E8 599 aaKnown RBP4.4□□□□□ -1.71
VPS35-208ENST00000568612 PPM1JQ5JR12 505 aa4.4□□□□□ -1.71
VPS35-208ENST00000568612 DUSP27Q5VZP5 1158 aa4.4□□□□□ -1.71
VPS35-208ENST00000568612 ZAR1Q86SH2 424 aa4.4□□□□□ -1.71
VPS35-208ENST00000568612 PHF6Q8IWS0 365 aaKnown RBP eCLIP4.4□□□□□ -1.71
VPS35-208ENST00000568612 SHISA5Q8N114 240 aa4.4□□□□□ -1.71
VPS35-208ENST00000568612 IPO4Q8TEX9 1081 aaKnown RBP4.4□□□□□ -1.71
VPS35-208ENST00000568612 METTL22Q9BUU2 404 aaPredicted RBP4.4□□□□□ -1.71
VPS35-208ENST00000568612 PIM2Q9P1W9 311 aa4.4□□□□□ -1.71
VPS35-208ENST00000568612 NAP1L2Q9ULW6 460 aaPredicted RBP4.4□□□□□ -1.71
VPS35-208ENST00000568612 PCDHGC5Q9Y5F6 944 aa4.4□□□□□ -1.71
VPS35-208ENST00000568612 PRR19A6NJB7 356 aa4.39□□□□□ -1.71
VPS35-208ENST00000568612 CYP26A1O43174 497 aa4.39□□□□□ -1.71
VPS35-208ENST00000568612 LIG3P49916 1009 aa4.39□□□□□ -1.71
VPS35-208ENST00000568612 MFAP1P55081 439 aaKnown RBP4.39□□□□□ -1.71
VPS35-208ENST00000568612 SEPT6Q14141 434 aa4.39□□□□□ -1.71
VPS35-208ENST00000568612 ZNF765Q7L2R6 523 aa4.39□□□□□ -1.71
VPS35-208ENST00000568612 CDC37L1Q7L3B6 337 aa4.39□□□□□ -1.71
VPS35-208ENST00000568612 ANKRD24Q8TF21 1146 aa4.39□□□□□ -1.71
VPS35-208ENST00000568612 ISL2Q96A47 359 aa4.39□□□□□ -1.71
VPS35-208ENST00000568612 CRELD1Q96HD1 420 aa4.39□□□□□ -1.71
VPS35-208ENST00000568612 GSX1Q9H4S2 264 aaPredicted RBP4.39□□□□□ -1.71
VPS35-208ENST00000568612 PCOLCE2Q9UKZ9 415 aa4.39□□□□□ -1.71
VPS35-208ENST00000568612 MED26O95402 600 aa4.38□□□□□ -1.71
VPS35-208ENST00000568612 NEFMP07197 916 aa4.38□□□□□ -1.71
VPS35-208ENST00000568612 CTSHP09668 335 aa4.38□□□□□ -1.71
VPS35-208ENST00000568612 FAM87AP0C7U9 286 aa4.38□□□□□ -1.71
VPS35-208ENST00000568612 HOXA10P31260 410 aaPredicted RBP4.38□□□□□ -1.71
VPS35-208ENST00000568612 CD97P48960 835 aa4.38□□□□□ -1.71
VPS35-208ENST00000568612 ERVK-24P63145 666 aa4.38□□□□□ -1.71
VPS35-208ENST00000568612 CYP27A1Q02318 531 aa4.38□□□□□ -1.71
VPS35-208ENST00000568612 PTPN11Q06124 597 aaPredicted RBP4.38□□□□□ -1.71
VPS35-208ENST00000568612 INTS5Q6P9B9 1019 aaKnown RBP4.38□□□□□ -1.71
VPS35-208ENST00000568612 LRFN4Q6PJG9 635 aa4.38□□□□□ -1.71
VPS35-208ENST00000568612 ARHGAP27Q6ZUM4 889 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms