RNA–Protein interactions for RNA: ENST00000568291.2

SF3B3-211, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,067 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-211ENST00000568291 SUGT1Q9Y2Z0 365 aa11.66□□□□□ -0.54
SF3B3-211ENST00000568291 CSADQ9Y600 493 aa11.66□□□□□ -0.54
SF3B3-211ENST00000568291 SALL1Q9NSC2 1324 aa11.65□□□□□ -0.54
SF3B3-211ENST00000568291 TESPA1A2RU30 521 aaPredicted RBP11.65□□□□□ -0.54
SF3B3-211ENST00000568291 POTEFA5A3E0 1075 aa11.65□□□□□ -0.54
SF3B3-211ENST00000568291 CYP2E1P05181 493 aaPredicted RBP11.65□□□□□ -0.54
SF3B3-211ENST00000568291 BTDP43251 543 aa11.65□□□□□ -0.54
SF3B3-211ENST00000568291 SP3Q02447 781 aa11.65□□□□□ -0.54
SF3B3-211ENST00000568291 TAF1CQ15572 869 aaPredicted RBP11.65□□□□□ -0.54
SF3B3-211ENST00000568291 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.65□□□□□ -0.54
SF3B3-211ENST00000568291 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.65□□□□□ -0.54
SF3B3-211ENST00000568291 BRI3BPQ8WY22 251 aa11.65□□□□□ -0.54
SF3B3-211ENST00000568291 OTUD5Q96G74 571 aa11.65□□□□□ -0.54
SF3B3-211ENST00000568291 MRIQ9BWK5 157 aa11.65□□□□□ -0.54
SF3B3-211ENST00000568291 ANTXR1Q9H6X2 564 aa11.65□□□□□ -0.54
SF3B3-211ENST00000568291 EFCC1Q9HA90 598 aa11.65□□□□□ -0.54
SF3B3-211ENST00000568291 PIH1D3Q9NQM4 214 aaKnown RBP11.65□□□□□ -0.54
SF3B3-211ENST00000568291 PCDH10Q9P2E7 1040 aa11.65□□□□□ -0.54
SF3B3-211ENST00000568291 LRP2BPQ9P2M1 347 aa11.65□□□□□ -0.54
SF3B3-211ENST00000568291 FAM198AQ9UFP1 575 aa11.65□□□□□ -0.54
SF3B3-211ENST00000568291 PTPN22Q9Y2R2 807 aa11.65□□□□□ -0.54
SF3B3-211ENST00000568291 PCDHB15Q9Y5E8 787 aa11.65□□□□□ -0.54
SF3B3-211ENST00000568291 MAST3O60307 1309 aa11.64□□□□□ -0.55
SF3B3-211ENST00000568291 CCL15-CCL14A0A0B4J2E2 113 aa11.64□□□□□ -0.55
SF3B3-211ENST00000568291 HMMRO75330 724 aa11.64□□□□□ -0.55
SF3B3-211ENST00000568291 UQCRFS1P1P0C7P4 283 aa11.64□□□□□ -0.55
SF3B3-211ENST00000568291 CAP1Q01518 475 aa11.64□□□□□ -0.55
SF3B3-211ENST00000568291 PICALMQ13492 652 aa11.64□□□□□ -0.55
SF3B3-211ENST00000568291 CCL15Q16663 113 aa11.64□□□□□ -0.55
SF3B3-211ENST00000568291 SPTY2D1Q68D10 685 aaPredicted RBP11.64□□□□□ -0.55
SF3B3-211ENST00000568291 NSUN4Q96CB9 384 aaKnown RBP11.64□□□□□ -0.55
SF3B3-211ENST00000568291 MS4A4AQ96JQ5 239 aa11.64□□□□□ -0.55
SF3B3-211ENST00000568291 TMOD2Q9NZR1 351 aa11.64□□□□□ -0.55
SF3B3-211ENST00000568291 RPAP1Q9BWH6 1393 aaPredicted RBP11.64□□□□□ -0.55
SF3B3-211ENST00000568291 MYH2Q9UKX2 1941 aa11.64□□□□□ -0.55
SF3B3-211ENST00000568291 GTF2A2P52657 109 aa11.63□□□□□ -0.55
SF3B3-211ENST00000568291 MAP3K9P80192 1104 aa11.63□□□□□ -0.55
SF3B3-211ENST00000568291 ADGRA1Q86SQ6 560 aa11.63□□□□□ -0.55
SF3B3-211ENST00000568291 ERC1Q8IUD2 1116 aa11.63□□□□□ -0.55
SF3B3-211ENST00000568291 ZGPATQ8N5A5 531 aaKnown RBP11.63□□□□□ -0.55
SF3B3-211ENST00000568291 ZKSCAN4Q969J2 545 aaPredicted RBP11.63□□□□□ -0.55
SF3B3-211ENST00000568291 ARMC5Q96C12 935 aa11.63□□□□□ -0.55
SF3B3-211ENST00000568291 EDC3Q96F86 508 aaKnown RBP11.63□□□□□ -0.55
SF3B3-211ENST00000568291 WRNIP1Q96S55 665 aa11.63□□□□□ -0.55
SF3B3-211ENST00000568291 ZFYVE28Q9HCC9 887 aa11.63□□□□□ -0.55
SF3B3-211ENST00000568291 DDX4Q9NQI0 724 aaKnown RBP11.63□□□□□ -0.55
SF3B3-211ENST00000568291 SNCAIPQ9Y6H5 919 aa11.63□□□□□ -0.55
SF3B3-211ENST00000568291 PTPRFP10586 1907 aa11.62□□□□□ -0.55
SF3B3-211ENST00000568291 MGAMO43451 1857 aa11.62□□□□□ -0.55
SF3B3-211ENST00000568291 SPDYE5A6NIY4 337 aa11.62□□□□□ -0.55
SF3B3-211ENST00000568291 IFIT2P09913 472 aaKnown RBP11.62□□□□□ -0.55
SF3B3-211ENST00000568291 RGS3P49796 1198 aa11.62□□□□□ -0.55
SF3B3-211ENST00000568291 HSP90AB4PQ58FF6 505 aa11.62□□□□□ -0.55
SF3B3-211ENST00000568291 SH3BP5LQ7L8J4 393 aa11.62□□□□□ -0.55
SF3B3-211ENST00000568291 FAM43AQ8N2R8 423 aa11.62□□□□□ -0.55
SF3B3-211ENST00000568291 KIF1BPQ96EK5 621 aa11.62□□□□□ -0.55
SF3B3-211ENST00000568291 CHMP4BQ9H444 224 aaKnown RBP11.62□□□□□ -0.55
SF3B3-211ENST00000568291 MROH7-TTC4A0A0A0MT08 1334 aa11.61□□□□□ -0.55
SF3B3-211ENST00000568291 GAKO14976 1311 aa11.61□□□□□ -0.55
SF3B3-211ENST00000568291 PDS5AQ29RF7 1337 aaKnown RBP11.61□□□□□ -0.55
SF3B3-211ENST00000568291 CEP290O15078 2479 aa11.61□□□□□ -0.55
SF3B3-211ENST00000568291 GPR75-ASB3A0A0A6YYF3 556 aa11.61□□□□□ -0.55
SF3B3-211ENST00000568291 DDTLA6NHG4 134 aaPredicted RBP11.61□□□□□ -0.55
SF3B3-211ENST00000568291 WDHD1O75717 1129 aaPredicted RBP11.61□□□□□ -0.55
SF3B3-211ENST00000568291 IDH1O75874 414 aaKnown RBP11.61□□□□□ -0.55
SF3B3-211ENST00000568291 RHBDL3P58872 404 aa11.61□□□□□ -0.55
SF3B3-211ENST00000568291 DYNLL1P63167 89 aaKnown RBP11.61□□□□□ -0.55
SF3B3-211ENST00000568291 IRX6P78412 446 aaPredicted RBP11.61□□□□□ -0.55
SF3B3-211ENST00000568291 SLFNL1Q499Z3 407 aa11.61□□□□□ -0.55
SF3B3-211ENST00000568291 TSHZ3Q63HK5 1081 aa11.61□□□□□ -0.55
SF3B3-211ENST00000568291 NAA16Q6N069 864 aaPredicted RBP11.61□□□□□ -0.55
SF3B3-211ENST00000568291 CLASRPQ8N2M8 674 aaKnown RBP11.61□□□□□ -0.55
SF3B3-211ENST00000568291 SH3RF3Q8TEJ3 882 aaPredicted RBP11.61□□□□□ -0.55
SF3B3-211ENST00000568291 FAM151AQ8WW52 585 aa11.61□□□□□ -0.55
SF3B3-211ENST00000568291 GCC1Q96CN9 775 aa11.61□□□□□ -0.55
SF3B3-211ENST00000568291 HOOK2Q96ED9 719 aa11.61□□□□□ -0.55
SF3B3-211ENST00000568291 DNAJC2Q99543 621 aaKnown RBP11.61□□□□□ -0.55
SF3B3-211ENST00000568291 AATFQ9NY61 560 aaKnown RBP eCLIP11.61□□□□□ -0.55
SF3B3-211ENST00000568291 PTCH2Q9Y6C5 1203 aa11.61□□□□□ -0.55
SF3B3-211ENST00000568291 DOCK1Q14185 1865 aa11.61□□□□□ -0.55
SF3B3-211ENST00000568291 FAM196BA6NMK8 535 aa11.6□□□□□ -0.55
SF3B3-211ENST00000568291 RAB11FIP3O75154 756 aa11.6□□□□□ -0.55
SF3B3-211ENST00000568291 CHGBP05060 677 aa11.6□□□□□ -0.55
SF3B3-211ENST00000568291 CETPP11597 493 aa11.6□□□□□ -0.55
SF3B3-211ENST00000568291 CYP7A1P22680 504 aa11.6□□□□□ -0.55
SF3B3-211ENST00000568291 INPP5BP32019 993 aa11.6□□□□□ -0.55
SF3B3-211ENST00000568291 PPIL2Q13356 520 aa11.6□□□□□ -0.55
SF3B3-211ENST00000568291 ARHGEF6Q15052 776 aa11.6□□□□□ -0.55
SF3B3-211ENST00000568291 SLC4A8Q2Y0W8 1093 aa11.6□□□□□ -0.55
SF3B3-211ENST00000568291 SLC9C1Q4G0N8 1177 aa11.6□□□□□ -0.55
SF3B3-211ENST00000568291 FKBP1CQ5VVH2 108 aa11.6□□□□□ -0.55
SF3B3-211ENST00000568291 DCAF15Q66K64 600 aa11.6□□□□□ -0.55
SF3B3-211ENST00000568291 FAM83AQ86UY5 434 aa11.6□□□□□ -0.55
SF3B3-211ENST00000568291 ERO1BQ86YB8 467 aa11.6□□□□□ -0.55
SF3B3-211ENST00000568291 ZSCAN29Q8IWY8 852 aaPredicted RBP11.6□□□□□ -0.55
SF3B3-211ENST00000568291 MIGA1Q8NAN2 632 aa11.6□□□□□ -0.55
SF3B3-211ENST00000568291 FAM163AQ96GL9 167 aaPredicted RBP11.6□□□□□ -0.55
SF3B3-211ENST00000568291 ZNF333Q96JL9 665 aa11.6□□□□□ -0.55
SF3B3-211ENST00000568291 ZNF512BQ96KM6 892 aaPredicted RBP11.6□□□□□ -0.55
SF3B3-211ENST00000568291 BOLA2Q9H3K6 86 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms