RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 ZSWIM8A7E2V4 1837 aa13.32□□□□□ -0.28
VPS39-208ENST00000564994 PHIPQ8WWQ0 1821 aa13.32□□□□□ -0.28
VPS39-208ENST00000564994 DDTLA6NHG4 134 aaPredicted RBP13.32□□□□□ -0.28
VPS39-208ENST00000564994 SOX10P56693 466 aa13.32□□□□□ -0.28
VPS39-208ENST00000564994 FBXO46Q6PJ61 603 aaPredicted RBP13.32□□□□□ -0.28
VPS39-208ENST00000564994 SNRKQ9NRH2 765 aa13.32□□□□□ -0.28
VPS39-208ENST00000564994 TLR7Q9NYK1 1049 aaKnown RBP13.32□□□□□ -0.28
VPS39-208ENST00000564994 DBNLQ9UJU6 430 aaKnown RBP13.32□□□□□ -0.28
VPS39-208ENST00000564994 PTPRFP10586 1907 aa13.32□□□□□ -0.28
VPS39-208ENST00000564994 DOCK1Q14185 1865 aa13.31□□□□□ -0.28
VPS39-208ENST00000564994 PHF20L1A8MW92 1017 aa13.31□□□□□ -0.28
VPS39-208ENST00000564994 BTBD19C9JJ37 291 aa13.31□□□□□ -0.28
VPS39-208ENST00000564994 CETPP11597 493 aa13.31□□□□□ -0.28
VPS39-208ENST00000564994 MAP3K10Q02779 954 aa13.31□□□□□ -0.28
VPS39-208ENST00000564994 MLLT1Q03111 559 aaPredicted RBP13.31□□□□□ -0.28
VPS39-208ENST00000564994 PPATQ06203 517 aa13.31□□□□□ -0.28
VPS39-208ENST00000564994 SNAPC2Q13487 334 aa13.31□□□□□ -0.28
VPS39-208ENST00000564994 PICALMQ13492 652 aa13.31□□□□□ -0.28
VPS39-208ENST00000564994 TAF1CQ15572 869 aaPredicted RBP13.31□□□□□ -0.28
VPS39-208ENST00000564994 TTC39AQ5SRH9 613 aa13.31□□□□□ -0.28
VPS39-208ENST00000564994 NOL9Q5SY16 702 aaKnown RBP13.31□□□□□ -0.28
VPS39-208ENST00000564994 OTOP1Q7RTM1 612 aa13.31□□□□□ -0.28
VPS39-208ENST00000564994 CD99L2Q8TCZ2 262 aa13.31□□□□□ -0.28
VPS39-208ENST00000564994 EAF2Q96CJ1 260 aaPredicted RBP13.31□□□□□ -0.28
VPS39-208ENST00000564994 RAI14Q9P0K7 980 aa13.31□□□□□ -0.28
VPS39-208ENST00000564994 TRIM17Q9Y577 477 aa13.31□□□□□ -0.28
VPS39-208ENST00000564994 FOCADQ5VW36 1801 aa13.31□□□□□ -0.28
VPS39-208ENST00000564994 BRCA2P51587 3418 aa13.3□□□□□ -0.28
VPS39-208ENST00000564994 PDE4DIPQ5VU43 2346 aa13.3□□□□□ -0.28
VPS39-208ENST00000564994 SIPA1L1O43166 1804 aa13.3□□□□□ -0.28
VPS39-208ENST00000564994 CYP2E1P05181 493 aaPredicted RBP13.3□□□□□ -0.28
VPS39-208ENST00000564994 GSTO1P78417 241 aa13.3□□□□□ -0.28
VPS39-208ENST00000564994 SP3Q02447 781 aa13.3□□□□□ -0.28
VPS39-208ENST00000564994 CCDC158Q5M9N0 1113 aa13.3□□□□□ -0.28
VPS39-208ENST00000564994 ZSCAN29Q8IWY8 852 aaPredicted RBP13.3□□□□□ -0.28
VPS39-208ENST00000564994 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.3□□□□□ -0.28
VPS39-208ENST00000564994 ERO1AQ96HE7 468 aa13.3□□□□□ -0.28
VPS39-208ENST00000564994 ZNF512BQ96KM6 892 aaPredicted RBP13.3□□□□□ -0.28
VPS39-208ENST00000564994 CCDC8Q9H0W5 538 aaPredicted RBP13.3□□□□□ -0.28
VPS39-208ENST00000564994 LRP2BPQ9P2M1 347 aa13.3□□□□□ -0.28
VPS39-208ENST00000564994 KCNH4Q9UQ05 1017 aa13.3□□□□□ -0.28
VPS39-208ENST00000564994 EXOC6BQ9Y2D4 811 aa13.3□□□□□ -0.28
VPS39-208ENST00000564994 ATAD5Q96QE3 1844 aa13.29□□□□□ -0.28
VPS39-208ENST00000564994 LDHCP07864 332 aa13.29□□□□□ -0.28
VPS39-208ENST00000564994 MOGSQ13724 837 aa13.29□□□□□ -0.28
VPS39-208ENST00000564994 ZFYVE28Q9HCC9 887 aa13.29□□□□□ -0.28
VPS39-208ENST00000564994 COG6Q9Y2V7 657 aa13.29□□□□□ -0.28
VPS39-208ENST00000564994 NPM3O75607 178 aaKnown RBP13.28□□□□□ -0.28
VPS39-208ENST00000564994 ZAP70P43403 619 aa13.28□□□□□ -0.28
VPS39-208ENST00000564994 ADGRA1Q86SQ6 560 aa13.28□□□□□ -0.28
VPS39-208ENST00000564994 SCYL3Q8IZE3 742 aa13.28□□□□□ -0.28
VPS39-208ENST00000564994 SH3RF3Q8TEJ3 882 aaPredicted RBP13.28□□□□□ -0.28
VPS39-208ENST00000564994 ZCCHC17Q9NP64 241 aaKnown RBP13.28□□□□□ -0.28
VPS39-208ENST00000564994 PIH1D3Q9NQM4 214 aaKnown RBP13.28□□□□□ -0.28
VPS39-208ENST00000564994 RCAN3Q9UKA8 241 aa13.28□□□□□ -0.28
VPS39-208ENST00000564994 KIAA0100Q14667 2235 aaKnown RBP13.28□□□□□ -0.28
VPS39-208ENST00000564994 FAM196BA6NMK8 535 aa13.27□□□□□ -0.29
VPS39-208ENST00000564994 TLR2O60603 784 aa13.27□□□□□ -0.29
VPS39-208ENST00000564994 MAP4K4O95819 1239 aaPredicted RBP13.27□□□□□ -0.29
VPS39-208ENST00000564994 MS4A1P11836 297 aa13.27□□□□□ -0.29
VPS39-208ENST00000564994 NAA16Q6N069 864 aaPredicted RBP13.27□□□□□ -0.29
VPS39-208ENST00000564994 SIRT2Q8IXJ6 389 aa13.27□□□□□ -0.29
VPS39-208ENST00000564994 TEX11Q8IYF3 940 aa13.27□□□□□ -0.29
VPS39-208ENST00000564994 OSBPL5Q9H0X9 879 aaPredicted RBP13.27□□□□□ -0.29
VPS39-208ENST00000564994 EFCC1Q9HA90 598 aa13.27□□□□□ -0.29
VPS39-208ENST00000564994 ZBTB40Q9NUA8 1239 aa13.27□□□□□ -0.29
VPS39-208ENST00000564994 AATFQ9NY61 560 aaKnown RBP eCLIP13.27□□□□□ -0.29
VPS39-208ENST00000564994 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.27□□□□□ -0.29
VPS39-208ENST00000564994 PTPN22Q9Y2R2 807 aa13.27□□□□□ -0.29
VPS39-208ENST00000564994 NDUFB9Q9Y6M9 179 aa13.27□□□□□ -0.29
VPS39-208ENST00000564994 COL2A1P02458 1487 aaPredicted RBP13.27□□□□□ -0.29
VPS39-208ENST00000564994 TBC1D12O60347 775 aa13.26□□□□□ -0.29
VPS39-208ENST00000564994 PTPRAP18433 802 aa13.26□□□□□ -0.29
VPS39-208ENST00000564994 GPAT2Q6NUI2 795 aa13.26□□□□□ -0.29
VPS39-208ENST00000564994 ANKRD23Q86SG2 305 aa13.26□□□□□ -0.29
VPS39-208ENST00000564994 IL1RAPL2Q9NP60 686 aa13.26□□□□□ -0.29
VPS39-208ENST00000564994 DDX19BQ9UMR2 479 aa13.26□□□□□ -0.29
VPS39-208ENST00000564994 AFG3L2Q9Y4W6 797 aa13.26□□□□□ -0.29
VPS39-208ENST00000564994 ZHX2Q9Y6X8 837 aa13.26□□□□□ -0.29
VPS39-208ENST00000564994 MYH1P12882 1939 aa13.25□□□□□ -0.29
VPS39-208ENST00000564994 MKI67P46013 3256 aaKnown RBP13.25□□□□□ -0.29
VPS39-208ENST00000564994 ADGRA2Q96PE1 1338 aa13.25□□□□□ -0.29
VPS39-208ENST00000564994 PDHXO00330 501 aa13.25□□□□□ -0.29
VPS39-208ENST00000564994 CXCL11O14625 94 aa13.25□□□□□ -0.29
VPS39-208ENST00000564994 CTNND1O60716 968 aaKnown RBP13.25□□□□□ -0.29
VPS39-208ENST00000564994 PPP4CP60510 307 aa13.25□□□□□ -0.29
VPS39-208ENST00000564994 RRP1BQ14684 758 aaKnown RBP13.25□□□□□ -0.29
VPS39-208ENST00000564994 C20orf194Q5TEA3 1177 aa13.25□□□□□ -0.29
VPS39-208ENST00000564994 C17orf99Q6UX52 265 aa13.25□□□□□ -0.29
VPS39-208ENST00000564994 CCDC84Q86UT8 332 aaPredicted RBP13.25□□□□□ -0.29
VPS39-208ENST00000564994 AACSQ86V21 672 aa13.25□□□□□ -0.29
VPS39-208ENST00000564994 ERC1Q8IUD2 1116 aa13.25□□□□□ -0.29
VPS39-208ENST00000564994 RHPN1Q8TCX5 695 aa13.25□□□□□ -0.29
VPS39-208ENST00000564994 ARHGAP39Q9C0H5 1083 aa13.25□□□□□ -0.29
VPS39-208ENST00000564994 ANTXR1Q9H6X2 564 aa13.25□□□□□ -0.29
VPS39-208ENST00000564994 PICK1Q9NRD5 415 aa13.25□□□□□ -0.29
VPS39-208ENST00000564994 MGAMO43451 1857 aa13.25□□□□□ -0.29
VPS39-208ENST00000564994 RBBP6Q7Z6E9 1792 aaKnown RBP13.25□□□□□ -0.29
VPS39-208ENST00000564994 A0A0G2JLL6 359 aaPredicted RBP13.24□□□□□ -0.29
VPS39-208ENST00000564994 CTGFP29279 349 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms