RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 LRP2BPQ9P2M1 347 aa15.58■□□□□ 0.09
CLK3-215ENST00000564353 SLC39A14Q15043 492 aa15.58■□□□□ 0.08
CLK3-215ENST00000564353 ATL3Q6DD88 541 aa15.58■□□□□ 0.08
CLK3-215ENST00000564353 FAM177A1Q8N128 213 aaPredicted RBP15.58■□□□□ 0.08
CLK3-215ENST00000564353 EXOC5O00471 708 aa15.58■□□□□ 0.08
CLK3-215ENST00000564353 TTF1Q15361 905 aaPredicted RBP15.58■□□□□ 0.08
CLK3-215ENST00000564353 ADGRA1Q86SQ6 560 aa15.58■□□□□ 0.08
CLK3-215ENST00000564353 OXER1Q8TDS5 423 aa15.58■□□□□ 0.08
CLK3-215ENST00000564353 LPIN2Q92539 896 aa15.58■□□□□ 0.08
CLK3-215ENST00000564353 ZNF215Q9UL58 517 aaPredicted RBP15.58■□□□□ 0.08
CLK3-215ENST00000564353 FAM205CA6NFA0 338 aa15.57■□□□□ 0.08
CLK3-215ENST00000564353 GSG1L2A8MUP6 293 aa15.57■□□□□ 0.08
CLK3-215ENST00000564353 TMEM232C9JQI7 657 aa15.57■□□□□ 0.08
CLK3-215ENST00000564353 CAVIN2O95810 425 aa15.57■□□□□ 0.08
CLK3-215ENST00000564353 NCAPHQ15003 741 aa15.57■□□□□ 0.08
CLK3-215ENST00000564353 UBE3CQ15386 1083 aa15.57■□□□□ 0.08
CLK3-215ENST00000564353 NTRK3Q16288 839 aa15.57■□□□□ 0.08
CLK3-215ENST00000564353 FOXP4Q8IVH2 680 aaPredicted RBP15.57■□□□□ 0.08
CLK3-215ENST00000564353 SERPINC1P01008 464 aa15.57■□□□□ 0.08
CLK3-215ENST00000564353 CMA1P23946 247 aa15.57■□□□□ 0.08
CLK3-215ENST00000564353 CDC25BP30305 580 aa15.57■□□□□ 0.08
CLK3-215ENST00000564353 ATP6V1AP38606 617 aa15.57■□□□□ 0.08
CLK3-215ENST00000564353 GYG1P46976 350 aa15.57■□□□□ 0.08
CLK3-215ENST00000564353 NLRP12P59046 1061 aa15.57■□□□□ 0.08
CLK3-215ENST00000564353 MFSD6Q6ZSS7 791 aa15.57■□□□□ 0.08
CLK3-215ENST00000564353 TRMT44Q8IYL2 757 aaKnown RBP15.57■□□□□ 0.08
CLK3-215ENST00000564353 SMTNL1A8MU46 457 aa15.56■□□□□ 0.08
CLK3-215ENST00000564353 MAP3K12Q12852 859 aa15.56■□□□□ 0.08
CLK3-215ENST00000564353 CFAP100Q494V2 611 aa15.56■□□□□ 0.08
CLK3-215ENST00000564353 CPLX2Q6PUV4 134 aaKnown RBP15.56■□□□□ 0.08
CLK3-215ENST00000564353 USP49Q70CQ1 688 aa15.56■□□□□ 0.08
CLK3-215ENST00000564353 LRRN4CLQ8ND94 238 aa15.56■□□□□ 0.08
CLK3-215ENST00000564353 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.56■□□□□ 0.08
CLK3-215ENST00000564353 PATL2C9JE40 543 aaKnown RBP15.56■□□□□ 0.08
CLK3-215ENST00000564353 COBLO75128 1261 aa15.56■□□□□ 0.08
CLK3-215ENST00000564353 SLC5A1P13866 664 aa15.56■□□□□ 0.08
CLK3-215ENST00000564353 CASP1P29466 404 aa15.56■□□□□ 0.08
CLK3-215ENST00000564353 FANCCQ00597 558 aa15.56■□□□□ 0.08
CLK3-215ENST00000564353 PDE4BQ07343 736 aa15.56■□□□□ 0.08
CLK3-215ENST00000564353 SSRP1Q08945 709 aaKnown RBP15.56■□□□□ 0.08
CLK3-215ENST00000564353 PTPAQ15257 358 aa15.56■□□□□ 0.08
CLK3-215ENST00000564353 MTERF4Q7Z6M4 381 aaKnown RBP15.56■□□□□ 0.08
CLK3-215ENST00000564353 CCAR2Q8N163 923 aaKnown RBP15.56■□□□□ 0.08
CLK3-215ENST00000564353 CNNM3Q8NE01 707 aa15.56■□□□□ 0.08
CLK3-215ENST00000564353 FBXO3Q9UK99 471 aa15.56■□□□□ 0.08
CLK3-215ENST00000564353 NIP7Q9Y221 180 aaKnown RBP eCLIP15.56■□□□□ 0.08
CLK3-215ENST00000564353 MYO5AQ9Y4I1 1855 aaKnown RBP15.56■□□□□ 0.08
CLK3-215ENST00000564353 CDHR2Q9BYE9 1310 aa15.56■□□□□ 0.08
CLK3-215ENST00000564353 METTL16Q86W50 562 aaKnown RBP15.55■□□□□ 0.08
CLK3-215ENST00000564353 DIS3L2Q8IYB7 885 aaKnown RBP15.55■□□□□ 0.08
CLK3-215ENST00000564353 FBXL16Q8N461 479 aa15.55■□□□□ 0.08
CLK3-215ENST00000564353 ZFP91Q96JP5 570 aaPredicted RBP15.55■□□□□ 0.08
CLK3-215ENST00000564353 MAP3K14Q99558 947 aa15.55■□□□□ 0.08
CLK3-215ENST00000564353 FANCLQ9NW38 375 aa15.55■□□□□ 0.08
CLK3-215ENST00000564353 PCDHA5Q9Y5H7 936 aa15.55■□□□□ 0.08
CLK3-215ENST00000564353 TOGARAM1Q9Y4F4 1720 aa15.55■□□□□ 0.08
CLK3-215ENST00000564353 PRR29P0C7W0 189 aa15.55■□□□□ 0.08
CLK3-215ENST00000564353 ARID4AP29374 1257 aaPredicted RBP15.55■□□□□ 0.08
CLK3-215ENST00000564353 E4F1Q66K89 784 aaPredicted RBP15.55■□□□□ 0.08
CLK3-215ENST00000564353 SYT10Q6XYQ8 523 aa15.55■□□□□ 0.08
CLK3-215ENST00000564353 RAI14Q9P0K7 980 aa15.55■□□□□ 0.08
CLK3-215ENST00000564353 PCDHB6Q9Y5E3 794 aa15.55■□□□□ 0.08
CLK3-215ENST00000564353 CTIFO43310 598 aaKnown RBP15.54■□□□□ 0.08
CLK3-215ENST00000564353 SFPQP23246 707 aaKnown RBP eCLIP15.54■□□□□ 0.08
CLK3-215ENST00000564353 AKNAD1Q5T1N1 836 aa15.54■□□□□ 0.08
CLK3-215ENST00000564353 HSD3B7Q9H2F3 369 aa15.54■□□□□ 0.08
CLK3-215ENST00000564353 KCNH3Q9ULD8 1083 aa15.54■□□□□ 0.08
CLK3-215ENST00000564353 CDKL5O76039 1030 aa15.54■□□□□ 0.08
CLK3-215ENST00000564353 CYP7A1P22680 504 aa15.54■□□□□ 0.08
CLK3-215ENST00000564353 C3orf67Q6ZVT6 689 aa15.54■□□□□ 0.08
CLK3-215ENST00000564353 ZBTB9Q96C00 473 aa15.54■□□□□ 0.08
CLK3-215ENST00000564353 PARP4Q9UKK3 1724 aaKnown RBP15.54■□□□□ 0.08
CLK3-215ENST00000564353 UBR2Q8IWV8 1755 aa15.54■□□□□ 0.08
CLK3-215ENST00000564353 ABCC6O95255 1503 aa15.54■□□□□ 0.08
CLK3-215ENST00000564353 POLR2DO15514 142 aaKnown RBP15.53■□□□□ 0.08
CLK3-215ENST00000564353 UQCRFS1P1P0C7P4 283 aa15.53■□□□□ 0.08
CLK3-215ENST00000564353 FGFR2P21802 821 aa15.53■□□□□ 0.08
CLK3-215ENST00000564353 BMP6P22004 513 aa15.53■□□□□ 0.08
CLK3-215ENST00000564353 CRKLP46109 303 aaKnown RBP15.53■□□□□ 0.08
CLK3-215ENST00000564353 TOB1P50616 345 aaPredicted RBP15.53■□□□□ 0.08
CLK3-215ENST00000564353 UBASH3AP57075 661 aa15.53■□□□□ 0.08
CLK3-215ENST00000564353 WTAPQ15007 396 aa15.53■□□□□ 0.08
CLK3-215ENST00000564353 NOM1Q5C9Z4 860 aaKnown RBP15.53■□□□□ 0.08
CLK3-215ENST00000564353 DYNLL1P63167 89 aaKnown RBP15.53■□□□□ 0.08
CLK3-215ENST00000564353 RBM6P78332 1123 aaKnown RBP15.53■□□□□ 0.08
CLK3-215ENST00000564353 ELF2Q15723 593 aa15.53■□□□□ 0.08
CLK3-215ENST00000564353 RTN1Q16799 776 aa15.53■□□□□ 0.08
CLK3-215ENST00000564353 ZNF34Q8IZ26 560 aa15.53■□□□□ 0.08
CLK3-215ENST00000564353 ANKRD7Q92527 254 aa15.53■□□□□ 0.08
CLK3-215ENST00000564353 STAMQ92783 540 aa15.53■□□□□ 0.08
CLK3-215ENST00000564353 CABP5Q9NP86 173 aa15.53■□□□□ 0.08
CLK3-215ENST00000564353 CHRNDQ07001 517 aa15.53■□□□□ 0.08
CLK3-215ENST00000564353 SLC51AQ86UW1 340 aa15.53■□□□□ 0.08
CLK3-215ENST00000564353 HOMER1Q86YM7 354 aa15.53■□□□□ 0.08
CLK3-215ENST00000564353 VPS54Q9P1Q0 977 aa15.53■□□□□ 0.08
CLK3-215ENST00000564353 NYAP1Q6ZVC0 841 aa15.52■□□□□ 0.08
CLK3-215ENST00000564353 NOSTRINQ8IVI9 506 aa15.52■□□□□ 0.08
CLK3-215ENST00000564353 SMAP1Q8IYB5 467 aaPredicted RBP15.52■□□□□ 0.08
CLK3-215ENST00000564353 TMEM87BQ96K49 555 aa15.52■□□□□ 0.08
CLK3-215ENST00000564353 UTP14AQ9BVJ6 771 aaKnown RBP15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms