RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 RHBDL3P58872 404 aa16.29■□□□□ 0.2
CLK3-213ENST00000563842 PPP4CP60510 307 aa16.29■□□□□ 0.2
CLK3-213ENST00000563842 PICALMQ13492 652 aa16.29■□□□□ 0.2
CLK3-213ENST00000563842 WNK4Q96J92 1243 aa16.29■□□□□ 0.2
CLK3-213ENST00000563842 CLMNQ96JQ2 1002 aa16.29■□□□□ 0.2
CLK3-213ENST00000563842 PIH1D3Q9NQM4 214 aaKnown RBP16.29■□□□□ 0.2
CLK3-213ENST00000563842 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.29■□□□□ 0.2
CLK3-213ENST00000563842 PCDHB15Q9Y5E8 787 aa16.29■□□□□ 0.2
CLK3-213ENST00000563842 RFX7Q2KHR2 1363 aa16.28■□□□□ 0.2
CLK3-213ENST00000563842 ATP5JP18859 108 aa16.28■□□□□ 0.2
CLK3-213ENST00000563842 CYP7A1P22680 504 aa16.28■□□□□ 0.2
CLK3-213ENST00000563842 MKRN3Q13064 507 aaKnown RBP16.28■□□□□ 0.2
CLK3-213ENST00000563842 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.28■□□□□ 0.2
CLK3-213ENST00000563842 TEX11Q8IYF3 940 aa16.28■□□□□ 0.2
CLK3-213ENST00000563842 GPATCH3Q96I76 525 aa16.28■□□□□ 0.2
CLK3-213ENST00000563842 WRNIP1Q96S55 665 aa16.28■□□□□ 0.2
CLK3-213ENST00000563842 ELP3Q9H9T3 547 aa16.28■□□□□ 0.2
CLK3-213ENST00000563842 ZBTB47Q9UFB7 747 aaPredicted RBP16.28■□□□□ 0.2
CLK3-213ENST00000563842 MYH1P12882 1939 aa16.27■□□□□ 0.2
CLK3-213ENST00000563842 ALDH1A1P00352 501 aa16.27■□□□□ 0.2
CLK3-213ENST00000563842 VGLL4Q14135 290 aa16.27■□□□□ 0.2
CLK3-213ENST00000563842 MIGA2Q7L4E1 593 aa16.27■□□□□ 0.2
CLK3-213ENST00000563842 RNF186Q9NXI6 227 aa16.27■□□□□ 0.2
CLK3-213ENST00000563842 AATFQ9NY61 560 aaKnown RBP eCLIP16.27■□□□□ 0.2
CLK3-213ENST00000563842 COL2A1P02458 1487 aaPredicted RBP16.27■□□□□ 0.19
CLK3-213ENST00000563842 SMARCA5O60264 1052 aaPredicted RBP16.26■□□□□ 0.19
CLK3-213ENST00000563842 TRPA1O75762 1119 aa16.26■□□□□ 0.19
CLK3-213ENST00000563842 OTUD7BQ6GQQ9 843 aa16.26■□□□□ 0.19
CLK3-213ENST00000563842 ERO1BQ86YB8 467 aa16.26■□□□□ 0.19
CLK3-213ENST00000563842 ZFPM1Q8IX07 1006 aa16.26■□□□□ 0.19
CLK3-213ENST00000563842 MAGEB6Q8N7X4 407 aa16.26■□□□□ 0.19
CLK3-213ENST00000563842 OPTNQ96CV9 577 aa16.26■□□□□ 0.19
CLK3-213ENST00000563842 DNAJC2Q99543 621 aaKnown RBP16.26■□□□□ 0.19
CLK3-213ENST00000563842 BOLA2Q9H3K6 86 aa16.26■□□□□ 0.19
CLK3-213ENST00000563842 ANTXR1Q9H6X2 564 aa16.26■□□□□ 0.19
CLK3-213ENST00000563842 DDX4Q9NQI0 724 aaKnown RBP16.26■□□□□ 0.19
CLK3-213ENST00000563842 ZNF112Q9UJU3 913 aa16.26■□□□□ 0.19
CLK3-213ENST00000563842 NDUFB9Q9Y6M9 179 aa16.26■□□□□ 0.19
CLK3-213ENST00000563842 GOLIM4O00461 696 aa16.25■□□□□ 0.19
CLK3-213ENST00000563842 SH3RF3Q8TEJ3 882 aaPredicted RBP16.25■□□□□ 0.19
CLK3-213ENST00000563842 OSBPL5Q9H0X9 879 aaPredicted RBP16.25■□□□□ 0.19
CLK3-213ENST00000563842 DHX36Q9H2U1 1008 aaKnown RBP16.25■□□□□ 0.19
CLK3-213ENST00000563842 ECHDC1Q9NTX5 307 aa16.25■□□□□ 0.19
CLK3-213ENST00000563842 PAG1Q9NWQ8 432 aa16.25■□□□□ 0.19
CLK3-213ENST00000563842 TSKSQ9UJT2 592 aa16.25■□□□□ 0.19
CLK3-213ENST00000563842 ATRNL1Q5VV63 1379 aa16.25■□□□□ 0.19
CLK3-213ENST00000563842 DDTLA6NHG4 134 aaPredicted RBP16.24■□□□□ 0.19
CLK3-213ENST00000563842 SPDYE5A6NIY4 337 aa16.24■□□□□ 0.19
CLK3-213ENST00000563842 TBC1D12O60347 775 aa16.24■□□□□ 0.19
CLK3-213ENST00000563842 MAP3K10Q02779 954 aa16.24■□□□□ 0.19
CLK3-213ENST00000563842 HDAC1Q13547 482 aaPredicted RBP16.24■□□□□ 0.19
CLK3-213ENST00000563842 ZKSCAN4Q969J2 545 aaPredicted RBP16.24■□□□□ 0.19
CLK3-213ENST00000563842 GCC1Q96CN9 775 aa16.24■□□□□ 0.19
CLK3-213ENST00000563842 HAUS7Q99871 368 aa16.24■□□□□ 0.19
CLK3-213ENST00000563842 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.24■□□□□ 0.192e-6■■□□□ 12.6
CLK3-213ENST00000563842 SUPT16HQ9Y5B9 1047 aaKnown RBP16.24■□□□□ 0.19
CLK3-213ENST00000563842 SNCAIPQ9Y6H5 919 aa16.24■□□□□ 0.19
CLK3-213ENST00000563842 DOCK1Q14185 1865 aa16.23■□□□□ 0.19
CLK3-213ENST00000563842 GTF2A2P52657 109 aa16.23■□□□□ 0.19
CLK3-213ENST00000563842 PPATQ06203 517 aa16.23■□□□□ 0.19
CLK3-213ENST00000563842 NOL9Q5SY16 702 aaKnown RBP16.23■□□□□ 0.19
CLK3-213ENST00000563842 SLC9C2Q5TAH2 1124 aa16.23■□□□□ 0.19
CLK3-213ENST00000563842 SH3BP5LQ7L8J4 393 aa16.23■□□□□ 0.19
CLK3-213ENST00000563842 ADGRA1Q86SQ6 560 aa16.23■□□□□ 0.19
CLK3-213ENST00000563842 TGFBRAP1Q8WUH2 860 aa16.23■□□□□ 0.19
CLK3-213ENST00000563842 OTUD5Q96G74 571 aa16.23■□□□□ 0.19
CLK3-213ENST00000563842 ATAD5Q96QE3 1844 aa16.22■□□□□ 0.19
CLK3-213ENST00000563842 TESPA1A2RU30 521 aaPredicted RBP16.22■□□□□ 0.19
CLK3-213ENST00000563842 INPP5BP32019 993 aa16.22■□□□□ 0.19
CLK3-213ENST00000563842 GJA5P36382 358 aa16.22■□□□□ 0.19
CLK3-213ENST00000563842 RGS19P49795 217 aa16.22■□□□□ 0.19
CLK3-213ENST00000563842 PPIL2Q13356 520 aa16.22■□□□□ 0.19
CLK3-213ENST00000563842 ZSCAN25Q6NSZ9 544 aa16.22■□□□□ 0.19
CLK3-213ENST00000563842 IFNL1Q8IU54 200 aa16.22■□□□□ 0.19
CLK3-213ENST00000563842 CFHR5Q9BXR6 569 aa16.22■□□□□ 0.19
CLK3-213ENST00000563842 RWDD1Q9H446 243 aaPredicted RBP16.22■□□□□ 0.19
CLK3-213ENST00000563842 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.22■□□□□ 0.19
CLK3-213ENST00000563842 PI4KBQ9UBF8 816 aa16.22■□□□□ 0.19
CLK3-213ENST00000563842 HERC5Q9UII4 1024 aaKnown RBP16.22■□□□□ 0.19
CLK3-213ENST00000563842 MAGEB6P1A0A0J9YX57 407 aa16.21■□□□□ 0.19
CLK3-213ENST00000563842 ERC2O15083 957 aa16.21■□□□□ 0.19
CLK3-213ENST00000563842 CTNND1O60716 968 aaKnown RBP16.21■□□□□ 0.19
CLK3-213ENST00000563842 HLA-DOAP06340 250 aa16.21■□□□□ 0.19
CLK3-213ENST00000563842 PDE6AP16499 860 aa16.21■□□□□ 0.19
CLK3-213ENST00000563842 USP5P45974 858 aa16.21■□□□□ 0.19
CLK3-213ENST00000563842 MAPKAPK5Q8IW41 473 aa16.21■□□□□ 0.19
CLK3-213ENST00000563842 MIGA1Q8NAN2 632 aa16.21■□□□□ 0.19
CLK3-213ENST00000563842 PICK1Q9NRD5 415 aa16.21■□□□□ 0.19
CLK3-213ENST00000563842 FLT1P17948 1338 aa16.2■□□□□ 0.18
CLK3-213ENST00000563842 TTC41PQ6P2S7 1318 aa16.2■□□□□ 0.18
CLK3-213ENST00000563842 PHF20L1A8MW92 1017 aa16.2■□□□□ 0.18
CLK3-213ENST00000563842 CETPP11597 493 aa16.2■□□□□ 0.18
CLK3-213ENST00000563842 DYNLL1P63167 89 aaKnown RBP16.2■□□□□ 0.18
CLK3-213ENST00000563842 SNAPC2Q13487 334 aa16.2■□□□□ 0.18
CLK3-213ENST00000563842 NOM1Q5C9Z4 860 aaKnown RBP16.2■□□□□ 0.18
CLK3-213ENST00000563842 ANKRD45Q5TZF3 282 aa16.2■□□□□ 0.18
CLK3-213ENST00000563842 FOXP4Q8IVH2 680 aaPredicted RBP16.2■□□□□ 0.18
CLK3-213ENST00000563842 SCYL3Q8IZE3 742 aa16.2■□□□□ 0.18
CLK3-213ENST00000563842 MS4A4AQ96JQ5 239 aa16.2■□□□□ 0.18
CLK3-213ENST00000563842 TRIM34Q9BYJ4 488 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms