RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 RGS22Q8NE09 1264 aa16.01■□□□□ 0.15
VPS9D1-202ENST00000561976 DDX17Q92841 729 aaKnown RBP16.01■□□□□ 0.15
VPS9D1-202ENST00000561976 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.01■□□□□ 0.15
VPS9D1-202ENST00000561976 MAP3K9P80192 1104 aa16.01■□□□□ 0.15
VPS9D1-202ENST00000561976 IFIT5Q13325 482 aaKnown RBP16.01■□□□□ 0.15
VPS9D1-202ENST00000561976 TMEM67Q5HYA8 995 aa16.01■□□□□ 0.15
VPS9D1-202ENST00000561976 METTL24Q5JXM2 366 aa16.01■□□□□ 0.15
VPS9D1-202ENST00000561976 TRMT44Q8IYL2 757 aaKnown RBP16.01■□□□□ 0.15
VPS9D1-202ENST00000561976 CCDC34Q96HJ3 373 aa16.01■□□□□ 0.15
VPS9D1-202ENST00000561976 MAN1B1Q9UKM7 699 aa16.01■□□□□ 0.15
VPS9D1-202ENST00000561976 UBE2Q2LH0YL09 131 aa16■□□□□ 0.15
VPS9D1-202ENST00000561976 ATP8B1O43520 1251 aa16■□□□□ 0.15
VPS9D1-202ENST00000561976 TBX2Q13207 712 aaPredicted RBP16■□□□□ 0.15
VPS9D1-202ENST00000561976 KARSQ15046 597 aaKnown RBP16■□□□□ 0.15
VPS9D1-202ENST00000561976 POSTNQ15063 836 aa16■□□□□ 0.15
VPS9D1-202ENST00000561976 CC2D1AQ6P1N0 951 aaPredicted RBP16■□□□□ 0.15
VPS9D1-202ENST00000561976 FAM89AQ96GI7 184 aa16■□□□□ 0.15
VPS9D1-202ENST00000561976 DESI2Q9BSY9 194 aa16■□□□□ 0.15
VPS9D1-202ENST00000561976 ADD2P35612 726 aa16■□□□□ 0.15
VPS9D1-202ENST00000561976 MCAMP43121 646 aa16■□□□□ 0.15
VPS9D1-202ENST00000561976 SSRP1Q08945 709 aaKnown RBP16■□□□□ 0.15
VPS9D1-202ENST00000561976 ZNF827Q17R98 1081 aa16■□□□□ 0.15
VPS9D1-202ENST00000561976 STK11IPQ8N1F8 1099 aa16■□□□□ 0.15
VPS9D1-202ENST00000561976 TC2NQ8N9U0 490 aa16■□□□□ 0.15
VPS9D1-202ENST00000561976 TMEM87BQ96K49 555 aa16■□□□□ 0.15
VPS9D1-202ENST00000561976 ARFGAP3Q9NP61 516 aa16■□□□□ 0.15
VPS9D1-202ENST00000561976 DACH1Q9UI36 760 aa16■□□□□ 0.15
VPS9D1-202ENST00000561976 UBN2Q6ZU65 1347 aa16■□□□□ 0.15
VPS9D1-202ENST00000561976 C4AP0C0L4 1744 aa16■□□□□ 0.15
VPS9D1-202ENST00000561976 C4BP0C0L5 1744 aa16■□□□□ 0.15
VPS9D1-202ENST00000561976 TRPM3Q9HCF6 1732 aaPredicted RBP16■□□□□ 0.15
VPS9D1-202ENST00000561976 POLR2DO15514 142 aaKnown RBP15.99■□□□□ 0.15
VPS9D1-202ENST00000561976 RANBP6O60518 1105 aaKnown RBP15.99■□□□□ 0.15
VPS9D1-202ENST00000561976 TBC1D8O95759 1140 aa15.99■□□□□ 0.15
VPS9D1-202ENST00000561976 OAS2P29728 719 aaKnown RBP15.99■□□□□ 0.15
VPS9D1-202ENST00000561976 HNRNPH2P55795 449 aaKnown RBP15.99■□□□□ 0.15
VPS9D1-202ENST00000561976 FMR1Q06787 632 aaKnown RBP eCLIP15.99■□□□□ 0.15
VPS9D1-202ENST00000561976 SAFBQ15424 915 aaKnown RBP eCLIP15.99■□□□□ 0.15
VPS9D1-202ENST00000561976 CCDC12Q8WUD4 166 aaPredicted RBP15.99■□□□□ 0.15
VPS9D1-202ENST00000561976 SMARCE1Q969G3 411 aa15.99■□□□□ 0.15
VPS9D1-202ENST00000561976 ZCCHC17Q9NP64 241 aaKnown RBP15.99■□□□□ 0.15
VPS9D1-202ENST00000561976 FBXO3Q9UK99 471 aa15.99■□□□□ 0.15
VPS9D1-202ENST00000561976 MRFAP1Q9Y605 127 aa15.99■□□□□ 0.15
VPS9D1-202ENST00000561976 SASH3O75995 380 aa15.99■□□□□ 0.15
VPS9D1-202ENST00000561976 SLC12A7Q9Y666 1083 aa15.99■□□□□ 0.15
VPS9D1-202ENST00000561976 BTBD18B2RXH4 712 aa15.98■□□□□ 0.15
VPS9D1-202ENST00000561976 SMC1AQ14683 1233 aaKnown RBP15.98■□□□□ 0.15
VPS9D1-202ENST00000561976 NTRK3Q16288 839 aa15.98■□□□□ 0.15
VPS9D1-202ENST00000561976 NOSTRINQ8IVI9 506 aa15.98■□□□□ 0.15
VPS9D1-202ENST00000561976 MLKLQ8NB16 471 aa15.98■□□□□ 0.15
VPS9D1-202ENST00000561976 NEK11Q8NG66 645 aa15.98■□□□□ 0.15
VPS9D1-202ENST00000561976 TRERF1Q96PN7 1200 aa15.98■□□□□ 0.15
VPS9D1-202ENST00000561976 INCENPQ9NQS7 918 aa15.98■□□□□ 0.15
VPS9D1-202ENST00000561976 SERTAD1Q9UHV2 236 aa15.98■□□□□ 0.15
VPS9D1-202ENST00000561976 PRR29P0C7W0 189 aa15.98■□□□□ 0.15
VPS9D1-202ENST00000561976 IRX5P78411 483 aaPredicted RBP15.98■□□□□ 0.15
VPS9D1-202ENST00000561976 MDM2Q00987 491 aaPredicted RBP15.98■□□□□ 0.15
VPS9D1-202ENST00000561976 IGDCC4Q8TDY8 1250 aa15.98■□□□□ 0.15
VPS9D1-202ENST00000561976 GOLGA1Q92805 767 aa15.98■□□□□ 0.15
VPS9D1-202ENST00000561976 DHX58Q96C10 678 aa15.98■□□□□ 0.15
VPS9D1-202ENST00000561976 PARD6BQ9BYG5 372 aa15.98■□□□□ 0.15
VPS9D1-202ENST00000561976 TJP1Q07157 1748 aa15.98■□□□□ 0.15
VPS9D1-202ENST00000561976 IFIT3O14879 490 aaKnown RBP15.98■□□□□ 0.15
VPS9D1-202ENST00000561976 ATP2B1P20020 1258 aa15.98■□□□□ 0.15
VPS9D1-202ENST00000561976 GRIN1Q05586 938 aa15.98■□□□□ 0.15
VPS9D1-202ENST00000561976 TCIRG1Q13488 830 aa15.98■□□□□ 0.15
VPS9D1-202ENST00000561976 LDHAL6AQ6ZMR3 332 aa15.98■□□□□ 0.15
VPS9D1-202ENST00000561976 NUTM2AQ8IVF1 878 aaPredicted RBP15.98■□□□□ 0.15
VPS9D1-202ENST00000561976 GRAMD1CQ8IYS0 662 aa15.98■□□□□ 0.15
VPS9D1-202ENST00000561976 ISCA1Q9BUE6 129 aa15.98■□□□□ 0.15
VPS9D1-202ENST00000561976 ZSWIM4Q9H7M6 989 aa15.98■□□□□ 0.15
VPS9D1-202ENST00000561976 LY9Q9HBG7 655 aa15.98■□□□□ 0.15
VPS9D1-202ENST00000561976 RAI14Q9P0K7 980 aa15.98■□□□□ 0.15
VPS9D1-202ENST00000561976 ZNF532Q9HCE3 1301 aa15.97■□□□□ 0.15
VPS9D1-202ENST00000561976 LAMB4A4D0S4 1761 aa15.97■□□□□ 0.15
VPS9D1-202ENST00000561976 ABCC12Q96J65 1359 aa15.97■□□□□ 0.15
VPS9D1-202ENST00000561976 TTF1Q15361 905 aaPredicted RBP15.97■□□□□ 0.15
VPS9D1-202ENST00000561976 ENOX1Q8TC92 643 aaKnown RBP15.97■□□□□ 0.15
VPS9D1-202ENST00000561976 SAMSN1Q9NSI8 373 aaKnown RBP15.97■□□□□ 0.15
VPS9D1-202ENST00000561976 KCNJ14Q9UNX9 436 aa15.97■□□□□ 0.15
VPS9D1-202ENST00000561976 C1orf167Q5SNV9 1468 aa15.97■□□□□ 0.15
VPS9D1-202ENST00000561976 ST5P78524 1137 aa15.97■□□□□ 0.15
VPS9D1-202ENST00000561976 GPS2Q13227 327 aa15.97■□□□□ 0.15
VPS9D1-202ENST00000561976 RSRC2Q7L4I2 434 aaKnown RBP15.97■□□□□ 0.15
VPS9D1-202ENST00000561976 DIS3L2Q8IYB7 885 aaKnown RBP15.97■□□□□ 0.15
VPS9D1-202ENST00000561976 CCDC82Q8N4S0 544 aa15.97■□□□□ 0.15
VPS9D1-202ENST00000561976 WASF1Q92558 559 aa15.97■□□□□ 0.15
VPS9D1-202ENST00000561976 RABGGTAQ92696 567 aa15.97■□□□□ 0.15
VPS9D1-202ENST00000561976 KIFC2Q96AC6 838 aa15.97■□□□□ 0.15
VPS9D1-202ENST00000561976 AIDAQ96BJ3 306 aa15.97■□□□□ 0.15
VPS9D1-202ENST00000561976 PIH1D3Q9NQM4 214 aaKnown RBP15.97■□□□□ 0.15
VPS9D1-202ENST00000561976 CNNM1Q9NRU3 951 aa15.97■□□□□ 0.15
VPS9D1-202ENST00000561976 FAM217BQ9NTX9 383 aaPredicted RBP15.97■□□□□ 0.15
VPS9D1-202ENST00000561976 ZNF18P17022 549 aa15.96■□□□□ 0.15
VPS9D1-202ENST00000561976 MTF1Q14872 753 aa15.96■□□□□ 0.15
VPS9D1-202ENST00000561976 TXLNBQ8N3L3 684 aa15.96■□□□□ 0.15
VPS9D1-202ENST00000561976 LZTFL1Q9NQ48 299 aa15.96■□□□□ 0.15
VPS9D1-202ENST00000561976 TBC1D2BQ9UPU7 963 aa15.96■□□□□ 0.15
VPS9D1-202ENST00000561976 CCDC175P0C221 793 aa15.96■□□□□ 0.15
VPS9D1-202ENST00000561976 BBXQ8WY36 941 aaPredicted RBP15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms